diff --git a/README.md b/README.md index 0345b8d..2ed2c09 100755 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ # MutMap User Guide -#### version 2.1.5 +#### version 2.1.6 ## Table of contents - [What is MutMap?](#What-is-MutMap) @@ -74,7 +74,7 @@ $ mutmap -h usage: mutmap -r -c -b -n -o [-T] [-e ] -MutMap version 2.1.5 +MutMap version 2.1.6 optional arguments: -h, --help show this help message and exit @@ -218,11 +218,12 @@ usage: mutplot -v -o -n [-w ] [-s ] [-D ] [-d ] [-N ] [-m ] [-S ] [-e ] [--igv] [--corr] [--indel] -MutPlot version 2.1.5 +MutPlot version 2.1.6 optional arguments: -h, --help show this help message and exit - -v , --vcf VCF which contains cultivar and mutant bulk. + -v , --vcf VCF file which contains cultivar and mutant bulk. + in this order. This VCF file must have AD field. -o , --out Output directory. Specified name can exist. -n , --N-bulk Number of individuals in mutant bulk. -w , --window Window size (kb). [2000] diff --git a/mutmap/__init__.py b/mutmap/__init__.py index 0b167e6..edc60b3 100644 --- a/mutmap/__init__.py +++ b/mutmap/__init__.py @@ -1 +1 @@ -__version__ = "2.1.5" +__version__ = "2.1.6" diff --git a/mutmap/params.py b/mutmap/params.py index 711882e..7aeb334 100755 --- a/mutmap/params.py +++ b/mutmap/params.py @@ -223,7 +223,8 @@ def mutplot_options(self): action='store', required=True, type=str, - help='VCF which contains cultivar and mutant bulk.', + help=('VCF file which contains cultivar and mutant bulk.\n' + 'in this order. This VCF file must have AD field.'), metavar='') parser.add_argument('-o',