From 3960e943ac7c435fdce34a61264a4e96a0e99e92 Mon Sep 17 00:00:00 2001 From: Adam Gayoso Date: Wed, 7 Jun 2023 20:44:43 -0700 Subject: [PATCH 1/5] Update pyproject.toml --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 9c1cc13..c567a2d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,7 +48,7 @@ python-igraph = {version = "*", optional = true} scanpy = {version = ">=1.6", optional = true} scanpydoc = {version = ">=0.5", optional = true} scvelo = ">=0.2.5" -scvi-tools = ">=0.20.1" +scvi-tools = ">=1.0.0" scikit-learn = ">=0.21.2" sphinx = {version = ">=4.1", optional = true} sphinx-autodoc-typehints = {version = "*", optional = true} From b2ed2e1ea7b6373402b5b909d2effb8242391d25 Mon Sep 17 00:00:00 2001 From: Adam Gayoso Date: Wed, 7 Jun 2023 20:45:15 -0700 Subject: [PATCH 2/5] Update pyproject.toml --- pyproject.toml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c567a2d..bca7aa3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -8,7 +8,6 @@ classifiers = [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "Natural Language :: English", - "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Operating System :: MacOS :: MacOS X", @@ -25,7 +24,7 @@ packages = [ {include = "velovi"}, ] readme = "README.md" -version = "0.2.1" +version = "0.3.0" [tool.poetry.dependencies] anndata = ">=0.7.5" @@ -43,7 +42,7 @@ sphinxcontrib-bibtex = {version = "*", optional = true} ipykernel = {version = "*", optional = true} pytest = {version = ">=4.4", optional = true} pytest-cov = {version = "*", optional = true} -python = ">=3.8,<4.0" +python = ">=3.9,<4.0" python-igraph = {version = "*", optional = true} scanpy = {version = ">=1.6", optional = true} scanpydoc = {version = ">=0.5", optional = true} From 83b40b2fe505c7c8989c84aaf9fcb79bdd1ee405 Mon Sep 17 00:00:00 2001 From: Adam Gayoso Date: Wed, 7 Jun 2023 20:46:29 -0700 Subject: [PATCH 3/5] Update _model.py --- velovi/_model.py | 1 - 1 file changed, 1 deletion(-) diff --git a/velovi/_model.py b/velovi/_model.py index 074edd6..e75b98b 100644 --- a/velovi/_model.py +++ b/velovi/_model.py @@ -177,7 +177,6 @@ def train( train_size=train_size, validation_size=validation_size, batch_size=batch_size, - use_gpu=use_gpu, ) training_plan = TrainingPlan(self.module, **plan_kwargs) From 58f66908491961a407abc769ba97e163589a5bbd Mon Sep 17 00:00:00 2001 From: Adam Gayoso Date: Wed, 7 Jun 2023 20:47:32 -0700 Subject: [PATCH 4/5] Update test.yml --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 9f3e728..6d4b1af 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -14,7 +14,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ["3.8", "3.9", "3.10"] + python-version: ["3.9", "3.10", "3.11"] steps: - uses: actions/checkout@v2 From 314b557d901e45603b21da9d8ad10d2f46fb0510 Mon Sep 17 00:00:00 2001 From: Adam Gayoso Date: Wed, 7 Jun 2023 20:47:58 -0700 Subject: [PATCH 5/5] Update pyproject.toml --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index bca7aa3..c2bdc50 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,6 +10,7 @@ classifiers = [ "Natural Language :: English", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux",