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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "snk-cli"
dynamic = ["version"]
description = ''
readme = "README.md"
requires-python = ">=3.8"
license = "MIT"
keywords = []
authors = [
{ name = "Wytamma Wirth", email = "[email protected]" },
]
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: Implementation :: PyPy",
]
dependencies = [
"snakemake>=7",
"typer~=0.9",
"shellingham >=1.3.0",
"rich >=10.11.0",
"pulp<2.8", # Pin pulp <2.8 for snakemake: https://github.com/snakemake/snakemake/issues/2607
"art~=5.9",
"makefun~=1.15",
"datrie>=0.8.2",
]
[project.urls]
Documentation = "https://github.com/wytamma/snk-cli#readme"
Issues = "https://github.com/wytamma/snk-cli/issues"
Source = "https://github.com/wytamma/snk-cli"
[tool.hatch.version]
path = "src/snk_cli/__about__.py"
[[tool.hatch.envs.snakemake.matrix]]
snakemake = ["==7.32.4", ">8"]
[tool.hatch.envs.default]
dependencies = [
"coverage[toml]>=6.5",
"pytest",
"snakemake{matrix:snakemake:==7.32.4}",
]
[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "coverage run -m pytest {args:tests}"
cov-report = [
"- coverage combine",
"coverage report",
]
cov = [
"test-cov",
"cov-report",
]
[[tool.hatch.envs.all.matrix]]
python = ["3.9", "3.10", "3.11", "3.12"]
[tool.hatch.envs.types]
dependencies = [
"mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:src/snk_cli tests}"
[tool.coverage.run]
source_pkgs = ["snk_cli", "tests"]
branch = true
parallel = true
omit = [
"src/snk_cli/__about__.py",
]
[tool.coverage.paths]
snk_cli = ["src/snk_cli", "*/snk-cli/src/snk_cli"]
tests = ["tests", "*/snk-cli/tests"]
[tool.coverage.report]
exclude_lines = [
"no cov",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]