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Download returns strain names with spaces removed #41

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Wytamma opened this issue Apr 11, 2023 · 0 comments
Open

Download returns strain names with spaces removed #41

Wytamma opened this issue Apr 11, 2023 · 0 comments
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bug Something isn't working GISAID Issues relate to GISAID or epicov

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@Wytamma
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Wytamma commented Apr 11, 2023

The query() function returns strain names with spaces intact, as expected:

Returning 0-50 of 65 entries.
> df$virus_name[1]
[1] "hCoV-19/New Caledonie/IPP03868/2022"

However, download() returns strain names with the spaces removed:

> dfseq <- download(credentials=credentials,list_of_accession_ids=df$accession_id[1])
Selecting entries...
Compressing data. Please wait...
Data ready.
Downloading...
tar.exe: Removing leading '/' from member names
> dfseq$strain
[1] "hCoV-19/NewCaledonie/IPP03868/2022"
@Wytamma Wytamma added bug Something isn't working GISAID Issues relate to GISAID or epicov labels Apr 11, 2023
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