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Workflow of imputation, doublet detection and data integration #30

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xhbkirby opened this issue Apr 12, 2020 · 0 comments
Open

Workflow of imputation, doublet detection and data integration #30

xhbkirby opened this issue Apr 12, 2020 · 0 comments

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@xhbkirby
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If I want to incorporate doubelt detection in my scRNA-seq workflow, should I perform imputation before or after detecting and removing doublets? A second question is if I need to integrate multiple datasets, can I still perform imputation on individual dataset and use the imputed output as input for integration? Thanks!

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