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Input and Output #25

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Winnie09 opened this issue Mar 18, 2019 · 1 comment

Winnie09 commented Mar 18, 2019

Dear author,

Thanks for developing the software! I have a few questions but did not find clear answer from your paper:

is the input a count matrix?
is the output a count matrix? Has it been normalized by library size, or log2-transformed?
I tried to use a raw count matrix as an input, but find in output matrix there are some values as large as 400+ and three quantiles are between 0 and 1?

Thanks!

arcolombo commented Oct 18, 2019

If I've done batch correction and log-2 normalization on my experiment data, can I input the batch-normalized counts into scIMpute?

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