From 080c1e420a6b48fbc93ceec2ba21872d38b71ce7 Mon Sep 17 00:00:00 2001 From: Janaka Ranasinghesagara Date: Fri, 30 Aug 2024 14:02:17 -0700 Subject: [PATCH 1/8] Added extended spectral data for spectral panel --- .../Spectroscopy/Resources/Spectra.txt | 1402 +- .../Resources/SpectralDictionary.txt | 11346 ++++++++++++---- .../Resources/SpectralDictionary.xml | 6693 ++++++++- 3 files changed, 16480 insertions(+), 2961 deletions(-) diff --git a/src/Vts/Modeling/Spectroscopy/Resources/Spectra.txt b/src/Vts/Modeling/Spectroscopy/Resources/Spectra.txt index a540a5856..a966b5346 100644 --- a/src/Vts/Modeling/Spectroscopy/Resources/Spectra.txt +++ b/src/Vts/Modeling/Spectroscopy/Resources/Spectra.txt @@ -1,202 +1,1202 @@ %LAMBDA nm HbO2 1/(mm*uM) Hb 1/(mm*uM) -600 0.737 3.3802 -602 0.6135 3.1372 -604 0.4901 2.8943 -606 0.4121 2.6515 -608 0.3794 2.413 -610 0.3468 2.1749 -612 0.3142 1.9786 -614 0.2816 1.7876 -616 0.2556 1.6915 -618 0.2363 1.5953 -620 0.2169 1.4992 -622 0.1976 1.4263 -624 0.1783 1.3603 -626 0.163 1.2943 -628 0.1517 1.236 -630 0.1405 1.1858 -632 0.1292 1.1356 -634 0.118 1.0895 -636 0.1103 1.0599 -638 0.106 1.0303 -640 0.1018 1.0007 -642 0.0976 0.9711 -644 0.0933 0.9416 -646 0.0899 0.9132 -648 0.0873 0.8884 -650 0.0848 0.8637 -652 0.0822 0.8389 -654 0.0796 0.8141 -656 0.0772 0.7894 -658 0.075 0.7646 -660 0.0736 0.7431 -662 0.0723 0.7232 -664 0.071 0.7033 -666 0.0697 0.6835 -668 0.0686 0.6636 -670 0.0677 0.6437 -672 0.0668 0.6238 -674 0.0658 0.6051 -676 0.0649 0.5883 -678 0.0643 0.5714 -680 0.0639 0.5545 -682 0.0636 0.5377 -684 0.0632 0.5208 -686 0.0628 0.504 -688 0.0632 0.4871 -690 0.0636 0.4726 -692 0.0639 0.4607 -694 0.0643 0.4489 -696 0.0649 0.437 -698 0.0659 0.4252 -700 0.0668 0.4132 -702 0.0677 0.401 -704 0.0686 0.3887 -706 0.0697 0.3764 -708 0.071 0.3647 -710 0.0723 0.3548 -712 0.0736 0.3449 -714 0.0749 0.3349 -716 0.0765 0.325 -718 0.0783 0.3151 -720 0.0801 0.3054 -722 0.082 0.296 -724 0.0838 0.2866 -726 0.0858 0.2772 -728 0.0878 0.2655 -730 0.0898 0.2538 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a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.xml b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.xml index 7eac04785..45c41a485 100644 --- a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.xml +++ b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.xml @@ -1 +1,6692 @@ -FatInverseMillimetersFractionalAbsorptionCoefficientNoneFat0.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003130660.0003016440.0002956630.0002910320.0002846910.000277910.0002852210.0002967030.0003081060.0003194880.0003139370.0003025040.0002829210.0002602770.0002403330.000221480.0002048570.0001892140.0001764520.000165020.0001612090.0001612090.0001521270.0001381750.0001274330.0001185210.0001151510.0001151510.0001082299.68E-059.82E-050.000108430.0001258130.0001484670.0001714310.0001946350.000224070.0002586970.0002993940.0003454520.0003738470.0003856290.0003916910.0003920310.0004148750.0004616330.0005187730.0005876560.0006558280.000723170.000776540.0008120960.0008521140.0008981720.0009286070.0009365290.0009025930.0008042950.0006909040.000552730.0004251970.0003163270.0002255310.000168510.0001228920.0001000487.83E-055.9E-054.56E-054.59E-054.61E-054.61E-055.07E-056.76E-058.46E-050.0001019480.0001218120.0001496570.0001767320.0002012260.0002264110.0002541160.0002808010.0003032950.0003272990.0003581350.000386380.0004016120.0004149350.0004175350.0004166950.0003940010.0003723470.0003581450.0003431820.0003218680.0003013140.0002883520.000276360.000276360.000276360.000276360.000276870.0002880020.0003002040.0003460420.0003924110.0004725650.000552730.0006451860.0007376530.00088760.0010383870.001278630.0015215740.0018644360.0022121990.0026801830.0031561690.0036764620.0042004570.0044659050.0047055480.0047417540.0047539560.0048962820.0050567110.0054792870.0059432710.0066544990.0074098350.0081322650.0088479940.0094192970.0099584940.0104708860.0109759770.0113470440.0116831050.0116330960.0114680660.0107559380.0098693780.0086870650.0074016330.0062018170.0050341070.0041390460.0033542040.0027855020.0023111160.0019591530.00166430.0014510610.001278630.0011472070.0010375870.0009549820.000887680.0008381310.0007993840.0007708790.0007490050.0007395730.0007387430.0007499950.0007701490.0008238080.0009037630.0010206840.0011686110.0013417420.0015371770.0017447140.001963354Nanometers6006026046066086106126146166186206226246266286306326346366386406426446466486506526546566586606626646666686706726746766786806826846866886906926946966987007027047067087107127147167187207227247267287307327347367387407427447467487507527547567587607627647667687707727747767787807827847867887907927947967988008028048068088108128148168188208228248268288308328348368388408428448468488508528548568588608628648668688708728748768788808828848868888908928948968989009029049069089109129149169189209229249269289309329349369389409429449469489509529549569589609629649669689709729749769789809829849869889909929949969981000H2OInverseMillimetersFractionalAbsorptionCoefficientNoneH2O5.8E-053.8E-052.8E-052.47E-052.5E-053.2E-054.5E-057.9E-050.0003013610.0003107720.0003171480.0003263170.000331780.0003358080.0003390820.0003423710.0003455560.0003485380.0003516880.0003549840.0003582490.0003612320.0003641840.0003671370.0003699420.0003721810.0003745940.0003775990.0003805550.000383570.000386990.0003909330.0003951030.0004002570.0004054040.0004113590.000418640.0004282340.000438620.000449040.000459530.000463410.000467290.000471620.0004760.000481230.000487020.000492630.00049790.000503350.000511790.000520230.000536350.000554650.000573650.000593340.000614590.00064130.000668010.000701410.00073520.000775530.000819110.000871780.000938720.00100840.00110030.00119210.00127770.00136210.00147460.00160960.00176690.00198210.00219740.00238930.00258130.00268690.00275940.00280820.00282720.00284360.0028470.00285030.00286110.00287280.00287350.00286720.00286290.00286260.00286150.00284690.00283230.00281230.00279070.00277040.00275150.00272750.00268620.00264490.00259780.00255030.00250670.0024650.00242260.00237920.0023360.00229390.00225180.00222890.00220990.00219840.0021930.00219320.00220810.0022230.00226270.00230250.00236750.00244220.00256030.00273260.00292120.00319210.00346290.00361910.00376080.00386040.0039330.00400040.00405710.00411310.00415650.00419990.00424260.00428510.00433690.00439810.00445660.0045060.00455550.00462570.00469710.00477560.00485770.00494950.00505660.00516440.00527830.00539220.0054970.00560.00571820.00584850.00597220.00607860.0061850.00629220.00639940.00652310.00665320.00679550.00695310.00712120.00734130.00756150.00789220.00823670.00870930.00926330.00984330.0104750.011130.0121880.0132460.0144190.0156250.0170710.0187570.020440.0221120.0237840.0267470.0297850.0329530.0361860.0390880.0414680.043740.0451520.0465640.0471790.0476350.0480050.0483060.0485290.0485490.0485690.0482050.047840.0473040.0467020.0460010.0451760.0443450.0434890.0426320.0416630.040679Nanometers400425450475500525550575600602604606608610612614616618620622624626628630632634636638640642644646648650652654656658660662664666668670672674676678680682684686688690692694696698700702704706708710712714716718720722724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-0700 Subject: [PATCH 2/8] Updated H2O spectra with https://omlc.org/spectra/water/data/segelstein81.txt data --- .../Resources/SpectralDictionary.txt | 898 ++++-------------- 1 file changed, 179 insertions(+), 719 deletions(-) diff --git a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt index db20f08e6..1c5f49031 100644 --- a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt +++ b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt @@ -2442,393 +2442,123 @@ 0.00073112, 0.0008851, 0.0010544, - 0.0010952, - 0.001141, - 0.0011901, - 0.0012427, - 0.001295, - 0.0013489, - 0.0014061, - 0.0014667, - 0.0015253, - 0.0015924, - 0.0016646, - 0.0017607, - 0.0018444, - 0.0019624, - 0.0020801, - 0.0021974, - 0.0023144, - 0.0024482, - 0.0025304, - 0.0026123, - 0.0026733, - 0.0027377, - 0.002768, - 0.0027982, - 0.0028113, - 0.0028245, - 0.0028376, - 0.0028338, - 0.0028468, - 0.002843, - 0.002856, - 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250, @@ -2925,392 +2655,122 @@ 705, 710, 715, - 716, - 717, - 718, 719, - 721, - 722, - 723, 724, - 725, - 726, - 727, - 728, 729, - 730, - 731, - 732, - 733, - 734, 735, - 736, - 738, - 739, 740, - 741, - 742, - 743, - 744, 745, - 746, - 747, - 748, 750, - 751, - 752, - 753, - 754, 755, - 756, - 758, - 759, 760, - 761, - 762, - 763, - 765, 766, - 767, - 768, 769, - 770, - 772, - 773, - 774, 775, - 776, - 778, - 779, 780, - 781, - 783, - 784, 785, - 786, - 787, - 789, - 790, 791, - 792, 794, - 795, - 796, - 797, - 799, 800, - 801, - 803, - 804, 805, - 807, - 808, 809, - 810, - 812, - 813, - 814, - 816, - 817, - 818, + 815, 820, - 821, - 822, 824, - 825, - 826, - 828, - 829, - 831, - 832, - 833, - 835, + 830, 836, - 838, - 839, 840, - 842, - 843, 845, - 846, - 848, 849, - 850, - 851, - 853, 855, - 856, - 858, 859, - 861, - 862, - 864, 865, - 866, - 868, - 870, 871, - 873, - 874, - 876, - 877, + 875, 879, - 880, - 882, - 883, 885, - 887, - 888, - 890, - 891, - 893, + 889, 895, - 896, - 898, - 899, - 901, - 902, - 904, + 900, 906, - 907, - 909, - 911, - 912, + 910, 914, - 916, - 917, - 919, - 921, - 922, - 924, - 926, - 928, + 920, + 925, 929, - 931, - 933, 935, - 936, - 938, 940, - 941, - 943, - 945, - 947, - 949, - 950, - 952, - 954, - 956, - 958, - 960, - 961, - 963, - 965, - 967, - 969, + 944, + 951, + 955, + 959, + 966, 971, - 973, - 974, - 976, - 978, + 975, 980, - 982, 984, - 986, - 988, - 990, - 992, - 994, - 996, - 998, + 991, + 995, 1000, - 1002, - 1004, - 1006, - 1008, - 1010, - 1012, - 1014, - 1016, - 1018, - 1020, - 1022, - 1024, - 1026, - 1028, + 1009, + 1021, 1030, - 1033, - 1035, - 1037, - 1039, - 1041, - 1043, - 1046, - 1048, + 1040, 1050, - 1052, - 1054, - 1057, 1059, - 1061, - 1063, - 1066, - 1068, - 1070, - 1073, - 1075, - 1077, - 1080, - 1082, - 1084, - 1087, + 1069, + 1079, 1089, - 1091, - 1094, - 1096, - 1098, - 1101, - 1103, - 1106, - 1108, - 1111, - 1113, - 1116, - 1118, - 1121, - 1123, - 1126, - 1128, - 1131, - 1133, - 1136, - 1139, - 1141, - 1144, - 1146, - 1149, - 1152, - 1154, - 1157, - 1160, - 1162, - 1165, - 1168, - 1171, - 1173, - 1176, - 1179, - 1182, - 1184, - 1187, - 1190, - 1193, - 1196, + 1099, + 1109, + 1119, + 1130, + 1140, + 1151, + 1159, + 1169, + 1180, + 1191, 1199, - 1201, - 1204, - 1207, - 1210, - 1213, - 1216, + 1211, 1219, - 1222, - 1225, - 1228, - 1231, - 1234, - 1237, - 1240, - 1243, - 1246, + 1230, + 1239, 1250, - 1253, - 1256, 1259, - 1262, - 1265, - 1269, - 1272, - 1275, - 1278, - 1282, - 1285, - 1288, - 1292, - 1295, - 1298, - 1302, - 1305, - 1308, - 1312, - 1315, - 1319, - 1322, - 1326, - 1329, - 1333, - 1336, + 1271, + 1279, + 1291, + 1300, + 1309, + 1321, + 1330, 1340, - 1344, - 1347, - 1351, - 1355, - 1358, - 1362, - 1366, - 1369, - 1373, - 1377, - 1381, - 1385, - 1388, - 1392, - 1396, + 1349, + 1361, + 1371, + 1380, + 1390, 1400, - 1404, - 1408, - 1412, - 1416, - 1420, - 1424, - 1428, - 1432, - 1437, - 1440, - 1445, + 1409, + 1419, + 1429, + 1439, 1449, - 1453, - 1457, - 1462, - 1466, - 1470, - 1474, + 1459, + 1469, 1479, - 1484, - 1488, - 1492, - 1497, - 1501, - 1506, + 1489, + 1500, 1510, - 1515, - 1519, - 1524, - 1529, - 1533, - 1538, - 1543, - 1548, - 1552, - 1557, - 1562, - 1567, - 1572, - 1577, - 1582, - 1587, - 1592, - 1597, + 1521, + 1531, + 1542, + 1549, + 1560, + 1570, + 1581, + 1589, 1600 ], "ChromophoreCoefficientType": "FractionalAbsorptionCoefficient", From cf45a3df07bdaccbf777925497e88ad25b63dbce Mon Sep 17 00:00:00 2001 From: Janaka Ranasinghesagara Date: Tue, 3 Sep 2024 16:29:29 -0700 Subject: [PATCH 3/8] Fixed unit tests after using updated H2O spectra --- .../Factories/ComputationFactoryTests.cs | 74 +++++++++---------- ...ValidateDiffusionReflectanceModelsTests.cs | 74 +++++++++---------- .../Spectroscopy/SpectralDatabaseTests.cs | 2 +- .../Modeling/Spectroscopy/TissueTests.cs | 10 +-- 4 files changed, 80 insertions(+), 80 deletions(-) diff --git a/src/Vts.Test/Factories/ComputationFactoryTests.cs b/src/Vts.Test/Factories/ComputationFactoryTests.cs index edafcbfb7..0aa63beb7 100644 --- a/src/Vts.Test/Factories/ComputationFactoryTests.cs +++ b/src/Vts.Test/Factories/ComputationFactoryTests.cs @@ -212,21 +212,21 @@ public void Validate_ROfRhoAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044606) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044634) < 0.000001); // API match // [1] -> ops0=650, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005555) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005563) < 0.000001); // [2] -> ops0=650, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036900) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036924) < 0.000001); // API match // [3] -> ops0=650, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005053) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005060) < 0.000001); // [4] -> ops1=700, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057894) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057925) < 0.000001); // API match // [5] -> ops1=700, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010309) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010320) < 0.000001); // [6] -> ops1=700, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048493) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048519) < 0.000001); // API match // [7] -> ops1=700, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009434) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009445) < 0.000001); } [Test] @@ -268,25 +268,25 @@ public void Validate_ROfRhoAndFt_With_Wavelength() // ... repeat above with imag, then next ops1... // [0] -> ops0=650, rho0=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.037575) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.037577) < 0.000001); // [1] -> ops0=650, rho0=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.037511) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.037514) < 0.000001); // [2] -> ops0=650, rho1=1.635, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.009306) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.009309) < 0.000001); // [3] -> ops0=650, rho1=1.635, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.009255) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.009258) < 0.000001); // [4] -> ops1=700, rho0=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.036425) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.036428) < 0.000001); // [5] -> ops1=700, rho0=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.036310) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.036313) < 0.000001); // [6] -> ops1=700, rho1=1.635, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.010657) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.010661) < 0.000001); // [7] -> ops1=700, rho1=1.635, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.010558) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.010562) < 0.000001); // [8] -> ops0=650, rho0=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[8] - 0.0) < 0.000001); // [9] -> ops0=650, rho0=0.5, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.001200) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.001201) < 0.000001); // [10] -> ops0=650, rho1=1.635, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[10] - 0.0) < 0.000001); // [11] -> ops1=650, rho1=1.635, fts1=0.5 imag @@ -294,11 +294,11 @@ public void Validate_ROfRhoAndFt_With_Wavelength() // [12] -> ops1=700, rho0=0.5, fts0=0.0 Assert.IsTrue(Math.Abs(rVsWavelength[12] - 0.0) < 0.000001); // [13] -> ops1=700, rho0=0.5, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.001446) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.001448) < 0.000001); // [14] -> ops1=700, rho1=1.635, fts0=0.0 real Assert.IsTrue(Math.Abs(rVsWavelength[14] - 0.0) < 0.000001); // [15] -> ops1=700, rho1=1.635, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[15] + 0.000929) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[15] + 0.000930) < 0.000001); } [Test] public void Validate_ROfFxAndTime_With_Wavelength() @@ -341,21 +341,21 @@ public void Validate_ROfFxAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.558702) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559834) < 0.000001); // [1] -> ops0=650, fx0=0.0, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.391871) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392428) < 0.000001); // [2] -> ops0=650, fx1=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.023055e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024520e-12) < 0.000001e-12); // [3] -> ops0=650, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.032586e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034617e-13) < 0.000001e-13); // [4] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.218329) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219706) < 0.000001); // [5] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.797200) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.798169) < 0.000001); // [6] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.347053e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.343112e-12) < 0.000001e-12); // [7] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.052883e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.054214e-13) < 0.000001e-13); } [Test] public void Validate_ROfFxAndFt_With_Wavelength() @@ -396,25 +396,25 @@ public void Validate_ROfFxAndFt_With_Wavelength() // ... repeat above with imag, then with ops1... // [0] -> ops0=650, fx0=0.0, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.890007) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.890399) < 0.000001); // API match // [1] -> ops0=650, fx0=0.0, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 1.888160) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 1.888550) < 0.000001); // [2] -> ops0=650, fx1=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.562537) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.562545) < 0.000001); // API match // [3] -> ops0=650, fx1=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.562543) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.562550) < 0.000001); // [4] -> ops1=700, fx0=0.0, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.118427) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.118962) < 0.000001); // API match // [5] -> ops1=700, fx0=0.0, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 2.113377) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 2.113900) < 0.000001); // [6] -> ops1=700, fx1=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.543539) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.543545) < 0.000001); // API match // [7] -> ops1=700, fx1=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.543546) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.543551) < 0.000001); // [8] -> ops0=650, fx0=0.0, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[8] - 0.0) < 0.000001); // API match // [9] -> ops0=650, fx0=0.0, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.045122) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.045154) < 0.000001); // [10] -> ops0=650, fx1=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[10] - 0.0) < 0.000001); // API match // [11] -> ops0=650, fx1=0.5, fts1=0.5 imag @@ -422,7 +422,7 @@ public void Validate_ROfFxAndFt_With_Wavelength() // [12] -> ops1=700, fx0=0.0, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[12] - 0.0) < 0.000001); // API match // [13] -> ops1=700, fx0=0.0, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.071758) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.071832) < 0.000001); // [14] -> ops1=700, fx1=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[14] - 0.0) < 0.000001); // API match // [15] -> ops1=700, fx1=0.5, fts1=0.5 imag diff --git a/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs b/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs index d73d03aa8..42b8cd7f0 100644 --- a/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs +++ b/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs @@ -404,21 +404,21 @@ public void validate_ROfRhoAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044606) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044634) < 0.000001); // API match // [1] -> ops0=650, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005555) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005563) < 0.000001); // [2] -> ops0=650, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036900) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036924) < 0.000001); // API match // [3] -> ops0=650, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005053) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005060) < 0.000001); // [4] -> ops1=700, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057894) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057925) < 0.000001); // API match // [5] -> ops1=700, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010309) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010320) < 0.000001); // [6] -> ops1=700, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048493) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048519) < 0.000001); // API match // [7] -> ops1=700, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009434) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009445) < 0.000001); } [Test] @@ -454,29 +454,29 @@ public void validate_ROfRhoAndFt_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, rho0=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 0.037575) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 0.037577) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[0].Imaginary - 0.0) < 0.000001); // [1] -> ops0=650, rho0=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 0.037511) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.001200) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 0.037514) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.001201) < 0.000001); // [2] -> ops0=650, rho1=1.635, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.009306) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.009309) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[2].Imaginary - 0.0) < 0.000001); // [3] -> ops0=650, rho1=1.635, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.009255) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.009258) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[3].Imaginary + 0.000674) < 0.000001); // [4] -> ops1=700, rho0=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 0.036425) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 0.036428) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[4].Imaginary - 0.0) < 0.000001); // [5] -> ops1=700, rho0=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 0.036310) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.001446) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 0.036313) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.001448) < 0.000001); // [6] -> ops1=700, rho1=1.635, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.010657) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.010661) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[6].Imaginary - 0.0) < 0.000001); // [7] -> ops1=700, rho1=1.635, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.010558) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000929) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.010562) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000930) < 0.000001); } [Test] public void validate_ROfFtAndTime_With_Wavelength() @@ -511,21 +511,21 @@ public void validate_ROfFtAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.558702) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559834) < 0.000001); // [1] -> ops0=650, fx0=0.0, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.391871) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392428) < 0.000001); // [2] -> ops0=650, fx1=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.023055e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024520e-12) < 0.000001e-12); // [3] -> ops0=650, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.032586e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034617e-13) < 0.000001e-13); // [4] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.218329) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219706) < 0.000001); // [5] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.797200) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.798169) < 0.000001); // [6] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.347053e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.343112e-12) < 0.000001e-12); // [7] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.052883e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.054214e-13) < 0.000001e-13); } [Test] public void validate_ROfFxAndFt_With_Wavelength() @@ -560,28 +560,28 @@ public void validate_ROfFxAndFt_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 1.890007) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 1.890399) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[0].Imaginary - 0.0) < 0.000001); // API match // [1] -> ops0=650, fx0=0.0, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 1.888160) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.045122) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 1.888550) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.045154) < 0.000001); // [2] -> ops0=650, fx1=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.562537) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.562545) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[2].Imaginary - 0.0) < 0.000001); // API match // [3] -> ops0=650, fx1=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.562543) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.562550) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[3].Imaginary + 0.000799) < 0.000001); // [4] -> ops1=700, fx0=0.0, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 2.118427) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 2.118962) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[4].Imaginary - 0.0) < 0.000001); // API match // [5] -> ops1=700, fx0=0.0, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 2.113377) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.071758) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 2.113900) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.071832) < 0.000001); // [6] -> ops1=700, fx1=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.543539) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.543545) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[6].Imaginary - 0.0) < 0.000001); // API match // [7] -> ops1=700, fx1=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.543546) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.543551) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000651) < 0.000001); } #endregion diff --git a/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs b/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs index 73e18929d..e125e92da 100644 --- a/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs +++ b/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs @@ -61,7 +61,7 @@ private void Clear_folders_and_files() public void Test_get_spectrum_value() { var spectrum = SpectralDatabase.GetSpectrumValue("H2O", 600); - Assert.AreEqual(0.000301, spectrum, 0.000001); + Assert.AreEqual(0.000202, spectrum, 0.000001); } [Test] diff --git a/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs b/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs index 8d3a6ea38..0866f6c84 100644 --- a/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs +++ b/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs @@ -56,7 +56,7 @@ public void Test_tissue_constructor_tissue_type() public void Test_get_mua() { var mua = _tissue.GetMua(1000); - Assert.AreEqual(0.067809, mua, 0.000001); + Assert.AreEqual(0.065231, mua, 0.000001); } [Test] @@ -91,7 +91,7 @@ public void Test_get_optical_properties() { var opticalProperties = _tissue.GetOpticalProperties(1000); Assert.AreEqual(1.4, opticalProperties.N); - Assert.AreEqual(0.067809, opticalProperties.Mua, 0.000001); + Assert.AreEqual(0.065231, opticalProperties.Mua, 0.000001); Assert.AreEqual(4.2, opticalProperties.Mus, 0.000001); Assert.AreEqual(0.84, opticalProperties.Musp, 0.000001); Assert.AreEqual(0.8, opticalProperties.G); @@ -104,17 +104,17 @@ public void Test_get_optical_properties_wavelength_array() 600, 700, 1000 }); Assert.AreEqual(1.4, opticalPropertyArray[0].N); - Assert.AreEqual(0.314685, opticalPropertyArray[0].Mua, 0.000001); + Assert.AreEqual(0.314602, opticalPropertyArray[0].Mua, 0.000001); Assert.AreEqual(5.562449, opticalPropertyArray[0].Mus, 0.000001); Assert.AreEqual(1.112489, opticalPropertyArray[0].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[0].G); Assert.AreEqual(1.4, opticalPropertyArray[1].N); - Assert.AreEqual(0.036131, opticalPropertyArray[1].Mua, 0.000001); + Assert.AreEqual(0.036077, opticalPropertyArray[1].Mua, 0.000001); Assert.AreEqual(5.110287, opticalPropertyArray[1].Mus, 0.000001); Assert.AreEqual(1.022057, opticalPropertyArray[1].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[1].G); Assert.AreEqual(1.4, opticalPropertyArray[2].N); - Assert.AreEqual(0.067809, opticalPropertyArray[2].Mua, 0.000001); + Assert.AreEqual(0.065231, opticalPropertyArray[2].Mua, 0.000001); Assert.AreEqual(4.2, opticalPropertyArray[2].Mus, 0.000001); Assert.AreEqual(0.84, opticalPropertyArray[2].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[2].G); From 3b6a88300f11377dc670472a63a9359999eed945 Mon Sep 17 00:00:00 2001 From: Janaka Ranasinghesagara Date: Thu, 5 Sep 2024 11:54:13 -0700 Subject: [PATCH 4/8] Updated H2O and Fat spectral data --- .../Resources/SpectralDictionary.txt | 1278 +++++--- .../Resources/SpectralDictionary.xml | 2664 ++++++++++++++++- 2 files changed, 3446 insertions(+), 496 deletions(-) diff --git a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt index 1c5f49031..4f6620df0 100644 --- a/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt +++ b/src/Vts/Modeling/Spectroscopy/Resources/SpectralDictionary.txt @@ -1,27 +1,11 @@ { "Fat": { "Spectrum": [ - 0.00828, - 0.008216, - 0.008158, - 0.008069, - 0.007927, - 0.007832, - 0.007721, - 0.007652, - 0.007623, - 0.00756, - 0.007474, - 0.007383, - 0.007244, - 0.007104, - 0.007, - 0.006899, - 0.006811, - 0.006729, - 0.006659, - 0.006571, - 0.006464, + 0.0272718, + 0.0209617, + 0.015336, + 0.0110371, + 0.008345, 0.006375, 0.006291, 0.00621, @@ -1171,27 +1155,11 @@ 0.016423 ], "Wavelengths": [ - 429, + 400, + 410, + 420, 430, - 431, - 432, - 433, - 434, - 435, - 436, - 437, - 438, - 439, 440, - 441, - 442, - 443, - 444, - 445, - 446, - 447, - 448, - 449, 450, 451, 452, @@ -2348,430 +2316,1032 @@ }, "H2O": { "Spectrum": [ - 0.00046782, - 0.0004236, - 0.00038637, - 0.00035313, - 0.00031914, - 0.00028773, - 0.00025999, - 0.00023824, - 0.00020799, - 0.00018749, - 0.00017381, - 0.00015774, - 0.00014388, - 0.00013273, - 0.00012531, - 0.00011913, - 0.00011349, - 0.00010815, - 0.00010235, - 0.000096605, - 0.000090791, - 0.000085712, - 0.000080911, - 0.00007637, - 0.000071939, - 0.000068059, - 0.000064121, - 0.00006012, - 0.000056757, - 0.000052852, - 0.00004965, - 0.000046246, - 0.000043563, - 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0.00046782 - 0.0004236 - 0.00038637 - 0.00035313 - 0.00031914 - 0.00028773 - 0.00025999 - 0.00023824 - 0.00020799 - 0.00018749 - 0.00017381 - 0.00015774 - 0.00014388 - 0.00013273 - 0.00012531 - 0.00011913 - 0.00011349 - 0.00010815 - 0.00010235 - 0.000096605 - 0.000090791 - 0.000085712 - 0.000080911 - 0.00007637 - 0.000071939 - 0.000068059 - 0.000064121 - 0.00006012 - 0.000056757 - 0.000052852 - 0.00004965 - 0.000046246 - 0.000043563 - 0.000040545 - 0.000037657 - 0.000034597 - 0.000031833 - 0.000029442 - 0.000026857 - 0.000024548 - 0.000022593 - 0.000021529 - 0.000020748 - 0.000020277 - 0.000019498 - 0.000018536 - 0.000018578 - 0.000018535 - 0.000018837 - 0.000019906 - 0.00002323 - 0.000026841 - 0.000031188 - 0.000035636 - 0.000037941 - 0.00003927 - 0.000041682 - 0.000044356 - 0.000048868 - 0.000052366 - 0.000055845 - 0.000060249 - 0.000064403 - 0.000069672 - 0.00007568 - 0.00008395 - 0.000096167 - 0.00011219 - 0.00013552 - 0.00016292 - 0.00020184 - 0.00023501 - 0.00025524 - 0.00027167 - 0.00028383 - 0.00029587 - 0.00029984 - 0.00030699 - 0.00030841 - 0.00031255 - 0.00032358 - 0.00034113 - 0.00036898 - 0.00038362 - 0.00039355 - 0.00040559 - 0.00042454 - 0.00045298 - 0.00048303 - 0.00053574 - 0.0006012 - 0.00073112 - 0.0008851 - 0.0010544 - 0.0010952 - 0.001141 - 0.0011901 - 0.0012427 + 0.00000663 + 0.00000579 + 0.0000053 + 0.00000503 + 0.00000473 + 0.00000452 + 0.00000444 + 0.00000442 + 0.00000454 + 0.00000474 + 0.00000478 + 0.00000482 + 0.00000495 + 0.00000504 + 0.0000053 + 0.0000058 + 0.00000635 + 0.00000696 + 0.00000751 + 0.0000083 + 0.00000922 + 0.00000969 + 0.00000962 + 0.00000957 + 0.00000979 + 0.00001005 + 0.00001011 + 0.0000102 + 0.0000106 + 0.0000109 + 0.0000114 + 0.0000121 + 0.0000127 + 0.0000131 + 0.0000136 + 0.0000144 + 0.000015 + 0.0000162 + 0.0000173 + 0.0000191 + 0.0000204 + 0.0000228 + 0.0000256 + 0.000028 + 0.0000325 + 0.0000372 + 0.0000396 + 0.0000399 + 0.0000409 + 0.0000416 + 0.0000417 + 0.0000428 + 0.0000434 + 0.0000447 + 0.0000452 + 0.0000466 + 0.0000474 + 0.0000489 + 0.0000511 + 0.0000537 + 0.0000565 + 0.0000593 + 0.0000596 + 0.0000606 + 0.0000619 + 0.000064 + 0.0000642 + 0.0000672 + 0.0000695 + 0.0000733 + 0.0000772 + 0.0000836 + 0.0000896 + 0.0000989 + 0.00011 + 0.000122 + 0.0001351 + 0.0001516 + 0.0001672 + 0.0001925 + 0.0002224 + 0.000247 + 0.0002577 + 0.0002629 + 0.0002644 + 0.0002665 + 0.0002678 + 0.0002707 + 0.0002755 + 0.000281 + 0.0002834 + 0.0002904 + 0.0002916 + 0.0002995 + 0.0003012 + 0.0003077 + 0.0003108 + 0.000322 + 0.000325 + 0.000335 + 0.00034 + 0.000358 + 0.000371 + 0.000393 + 0.00041 + 0.000424 + 0.000429 + 0.000436 + 0.000439 + 0.000448 + 0.000448 + 0.000461 + 0.000465 + 0.000478 + 0.000486 + 0.000502 + 0.000516 + 0.000538 + 0.000559 + 0.000592 + 0.000624 + 0.000663 + 0.000704 + 0.000756 + 0.000827 + 0.000914 + 0.001007 + 0.001119 + 0.001231 0.001295 0.0013489 0.0014061 @@ -487,108 +2836,139 @@ 0.84726 0.8130252 0.7868735 - 0.77148046 + 0.7608851 Nanometers - 250 - 255 - 260 - 265 - 270 - 275 - 280 - 285 - 290 - 295 - 300 - 305 - 310 - 315 - 320 - 325 - 330 - 335 - 340 - 345 - 350 - 355 - 360 - 365 - 370 - 375 - 380 - 385 - 390 - 395 400 + 402.5 405 + 407.5 410 + 412.5 415 + 417.5 420 + 422.5 425 - 429 + 427.5 + 430 + 432.5 435 + 437.5 440 + 442.5 445 + 447.5 450 + 452.5 455 + 457.5 460 + 462.5 465 + 467.5 470 + 472.5 475 + 477.5 480 + 482.5 485 + 487.5 490 + 492.5 495 + 497.5 500 + 502.5 505 + 507.5 510 + 512.5 515 + 517.5 520 + 522.5 525 + 527.5 530 + 532.5 535 + 537.5 540 + 542.5 545 + 547.5 550 + 552.5 555 + 557.5 560 + 562.5 565 + 567.5 570 + 572.5 575 - 579 + 577.5 + 580 + 582.5 585 + 587.5 590 - 596 + 592.5 + 595 + 597.5 600 + 602.5 605 + 607.5 610 + 612.5 615 - 619 + 617.5 + 620 + 622.5 625 - 629 + 627.5 + 630 + 632.5 635 + 637.5 640 - 646 + 642.5 + 645 + 647.5 650 + 652.5 655 - 661 + 657.5 + 660 + 662.5 665 + 667.5 670 + 672.5 675 - 681 + 677.5 + 680 + 682.5 685 + 687.5 690 + 692.5 695 + 697.5 700 + 702.5 705 + 707.5 710 + 712.5 715 - 716 - 717 - 718 - 719 + 717.5 + 720 721 722 723 @@ -971,7 +3351,7 @@ 1587 1592 1597 - 1600 + 1602 From f839d366886c39ab22f126231cbfaa086dd2bf27 Mon Sep 17 00:00:00 2001 From: Janaka Ranasinghesagara Date: Fri, 6 Sep 2024 15:27:53 -0700 Subject: [PATCH 5/8] Updated unit tests --- .../Factories/ComputationFactoryTests.cs | 72 +++++++++---------- ...ValidateDiffusionReflectanceModelsTests.cs | 72 +++++++++---------- .../Spectroscopy/SpectralDatabaseTests.cs | 2 +- .../Modeling/Spectroscopy/TissueTests.cs | 10 +-- 4 files changed, 78 insertions(+), 78 deletions(-) diff --git a/src/Vts.Test/Factories/ComputationFactoryTests.cs b/src/Vts.Test/Factories/ComputationFactoryTests.cs index 0aa63beb7..aca5201a8 100644 --- a/src/Vts.Test/Factories/ComputationFactoryTests.cs +++ b/src/Vts.Test/Factories/ComputationFactoryTests.cs @@ -212,21 +212,21 @@ public void Validate_ROfRhoAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044634) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044627) < 0.000001); // API match // [1] -> ops0=650, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005563) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005561) < 0.000001); // [2] -> ops0=650, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036924) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036918) < 0.000001); // API match // [3] -> ops0=650, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005060) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005058) < 0.000001); // [4] -> ops1=700, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057925) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057913) < 0.000001); // API match // [5] -> ops1=700, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010320) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010316) < 0.000001); // [6] -> ops1=700, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048519) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048509) < 0.000001); // API match // [7] -> ops1=700, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009445) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009441) < 0.000001); } [Test] @@ -270,23 +270,23 @@ public void Validate_ROfRhoAndFt_With_Wavelength() // [0] -> ops0=650, rho0=0.5, fts0=0.0 real Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.037577) < 0.000001); // [1] -> ops0=650, rho0=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.037514) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.037513) < 0.000001); // [2] -> ops0=650, rho1=1.635, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.009309) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.009308) < 0.000001); // [3] -> ops0=650, rho1=1.635, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.009258) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.009257) < 0.000001); // [4] -> ops1=700, rho0=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.036428) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.036426) < 0.000001); // [5] -> ops1=700, rho0=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.036313) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.036311) < 0.000001); // [6] -> ops1=700, rho1=1.635, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.010661) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.010659) < 0.000001); // [7] -> ops1=700, rho1=1.635, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.010562) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.010560) < 0.000001); // [8] -> ops0=650, rho0=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[8] - 0.0) < 0.000001); // [9] -> ops0=650, rho0=0.5, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.001201) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.001200) < 0.000001); // [10] -> ops0=650, rho1=1.635, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[10] - 0.0) < 0.000001); // [11] -> ops1=650, rho1=1.635, fts1=0.5 imag @@ -294,11 +294,11 @@ public void Validate_ROfRhoAndFt_With_Wavelength() // [12] -> ops1=700, rho0=0.5, fts0=0.0 Assert.IsTrue(Math.Abs(rVsWavelength[12] - 0.0) < 0.000001); // [13] -> ops1=700, rho0=0.5, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.001448) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.001447) < 0.000001); // [14] -> ops1=700, rho1=1.635, fts0=0.0 real Assert.IsTrue(Math.Abs(rVsWavelength[14] - 0.0) < 0.000001); // [15] -> ops1=700, rho1=1.635, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[15] + 0.000930) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[15] + 0.000929) < 0.000001); } [Test] public void Validate_ROfFxAndTime_With_Wavelength() @@ -341,21 +341,21 @@ public void Validate_ROfFxAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559834) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559579) < 0.000001); // [1] -> ops0=650, fx0=0.0, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392428) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392302) < 0.000001); // [2] -> ops0=650, fx1=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024520e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024166e-12) < 0.000001e-12); // [3] -> ops0=650, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034617e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034161e-13) < 0.000001e-13); // [4] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219706) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219202) < 0.000001); // [5] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.798169) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.797814) < 0.000001); // [6] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.343112e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.344535e-12) < 0.000001e-12); // [7] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.054214e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.053738e-13) < 0.000001e-13); } [Test] public void Validate_ROfFxAndFt_With_Wavelength() @@ -396,25 +396,25 @@ public void Validate_ROfFxAndFt_With_Wavelength() // ... repeat above with imag, then with ops1... // [0] -> ops0=650, fx0=0.0, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.890399) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.890311) < 0.000001); // API match // [1] -> ops0=650, fx0=0.0, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 1.888550) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 1.888462) < 0.000001); // [2] -> ops0=650, fx1=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.562545) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.562543) < 0.000001); // API match // [3] -> ops0=650, fx1=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.562550) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.562548) < 0.000001); // [4] -> ops1=700, fx0=0.0, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.118962) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.118766) < 0.000001); // API match // [5] -> ops1=700, fx0=0.0, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 2.113900) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 2.113708) < 0.000001); // [6] -> ops1=700, fx1=0.5, fts0=0.0 real - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.543545) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.543542) < 0.000001); // API match // [7] -> ops1=700, fx1=0.5, fts1=0.5 real - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.543551) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.543549) < 0.000001); // [8] -> ops0=650, fx0=0.0, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[8] - 0.0) < 0.000001); // API match // [9] -> ops0=650, fx0=0.0, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.045154) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[9] + 0.045147) < 0.000001); // [10] -> ops0=650, fx1=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[10] - 0.0) < 0.000001); // API match // [11] -> ops0=650, fx1=0.5, fts1=0.5 imag @@ -422,7 +422,7 @@ public void Validate_ROfFxAndFt_With_Wavelength() // [12] -> ops1=700, fx0=0.0, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[12] - 0.0) < 0.000001); // API match // [13] -> ops1=700, fx0=0.0, fts1=0.5 imag - Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.071832) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[13] + 0.071804) < 0.000001); // [14] -> ops1=700, fx1=0.5, fts0=0.0 imag Assert.IsTrue(Math.Abs(rVsWavelength[14] - 0.0) < 0.000001); // API match // [15] -> ops1=700, fx1=0.5, fts1=0.5 imag diff --git a/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs b/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs index 42b8cd7f0..3719726ce 100644 --- a/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs +++ b/src/Vts.Test/Modeling/ForwardSolvers/ValidateDiffusionReflectanceModelsTests.cs @@ -404,21 +404,21 @@ public void validate_ROfRhoAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044634) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 0.044627) < 0.000001); // API match // [1] -> ops0=650, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005563) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.005561) < 0.000001); // [2] -> ops0=650, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036924) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 0.036918) < 0.000001); // API match // [3] -> ops0=650, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005060) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 0.005058) < 0.000001); // [4] -> ops1=700, rho0=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057925) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 0.057913) < 0.000001); // API match // [5] -> ops1=700, rho0=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010320) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.010316) < 0.000001); // [6] -> ops1=700, rho1=1.635, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048519) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 0.048509) < 0.000001); // API match // [7] -> ops1=700, rho1=1.635, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009445) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 0.009441) < 0.000001); } [Test] @@ -457,26 +457,26 @@ public void validate_ROfRhoAndFt_With_Wavelength() Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 0.037577) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[0].Imaginary - 0.0) < 0.000001); // [1] -> ops0=650, rho0=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 0.037514) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.001201) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 0.037513) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.001200) < 0.000001); // [2] -> ops0=650, rho1=1.635, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.009309) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.009308) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[2].Imaginary - 0.0) < 0.000001); // [3] -> ops0=650, rho1=1.635, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.009258) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.009257) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[3].Imaginary + 0.000674) < 0.000001); // [4] -> ops1=700, rho0=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 0.036428) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 0.036426) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[4].Imaginary - 0.0) < 0.000001); // [5] -> ops1=700, rho0=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 0.036313) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.001448) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 0.036311) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.001447) < 0.000001); // [6] -> ops1=700, rho1=1.635, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.010661) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.010659) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[6].Imaginary - 0.0) < 0.000001); // [7] -> ops1=700, rho1=1.635, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.010562) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000930) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.010560) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000929) < 0.000001); } [Test] public void validate_ROfFtAndTime_With_Wavelength() @@ -511,21 +511,21 @@ public void validate_ROfFtAndTime_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559834) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[0] - 1.559579) < 0.000001); // [1] -> ops0=650, fx0=0.0, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392428) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1] - 0.392302) < 0.000001); // [2] -> ops0=650, fx1=0.5, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024520e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[2] - 5.024166e-12) < 0.000001e-12); // [3] -> ops0=650, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034617e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[3] - 1.034161e-13) < 0.000001e-13); // [4] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219706) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[4] - 2.219202) < 0.000001); // [5] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.798169) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5] - 0.797814) < 0.000001); // [6] -> ops1=700, fx0=0.0, ts0=0.05 - Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.343112e-12) < 0.000001e-12); + Assert.IsTrue(Math.Abs(rVsWavelength[6] - 1.344535e-12) < 0.000001e-12); // [7] -> ops1=700, fx1=0.5, ts1=0.10 - Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.054214e-13) < 0.000001e-13); + Assert.IsTrue(Math.Abs(rVsWavelength[7] - 2.053738e-13) < 0.000001e-13); } [Test] public void validate_ROfFxAndFt_With_Wavelength() @@ -560,28 +560,28 @@ public void validate_ROfFxAndFt_With_Wavelength() // ... repeat above with ops1... // [0] -> ops0=650, fx0=0.0, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 1.890399) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[0].Real - 1.890311) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[0].Imaginary - 0.0) < 0.000001); // API match // [1] -> ops0=650, fx0=0.0, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 1.888550) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.045154) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Real - 1.888462) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[1].Imaginary + 0.045147) < 0.000001); // [2] -> ops0=650, fx1=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.562545) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[2].Real - 0.562543) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[2].Imaginary - 0.0) < 0.000001); // API match // [3] -> ops0=650, fx1=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.562550) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[3].Real - 0.562548) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[3].Imaginary + 0.000799) < 0.000001); // [4] -> ops1=700, fx0=0.0, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 2.118962) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[4].Real - 2.118766) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[4].Imaginary - 0.0) < 0.000001); // API match // [5] -> ops1=700, fx0=0.0, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 2.113900) < 0.000001); - Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.071832) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Real - 2.113708) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[5].Imaginary + 0.071804) < 0.000001); // [6] -> ops1=700, fx1=0.5, fts0=0.0 - Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.543545) < 0.000001); // API match + Assert.IsTrue(Math.Abs(rVsWavelength[6].Real - 0.543542) < 0.000001); // API match Assert.IsTrue(Math.Abs(rVsWavelength[6].Imaginary - 0.0) < 0.000001); // API match // [7] -> ops1=700, fx1=0.5, fts1=0.5 - Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.543551) < 0.000001); + Assert.IsTrue(Math.Abs(rVsWavelength[7].Real - 0.543549) < 0.000001); Assert.IsTrue(Math.Abs(rVsWavelength[7].Imaginary + 0.000651) < 0.000001); } #endregion diff --git a/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs b/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs index e125e92da..df9431d19 100644 --- a/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs +++ b/src/Vts.Test/Modeling/Spectroscopy/SpectralDatabaseTests.cs @@ -61,7 +61,7 @@ private void Clear_folders_and_files() public void Test_get_spectrum_value() { var spectrum = SpectralDatabase.GetSpectrumValue("H2O", 600); - Assert.AreEqual(0.000202, spectrum, 0.000001); + Assert.AreEqual(0.000222, spectrum, 0.000001); } [Test] diff --git a/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs b/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs index 0866f6c84..5999b98b3 100644 --- a/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs +++ b/src/Vts.Test/Modeling/Spectroscopy/TissueTests.cs @@ -56,7 +56,7 @@ public void Test_tissue_constructor_tissue_type() public void Test_get_mua() { var mua = _tissue.GetMua(1000); - Assert.AreEqual(0.065231, mua, 0.000001); + Assert.AreEqual(0.067854, mua, 0.000001); } [Test] @@ -91,7 +91,7 @@ public void Test_get_optical_properties() { var opticalProperties = _tissue.GetOpticalProperties(1000); Assert.AreEqual(1.4, opticalProperties.N); - Assert.AreEqual(0.065231, opticalProperties.Mua, 0.000001); + Assert.AreEqual(0.067854, opticalProperties.Mua, 0.000001); Assert.AreEqual(4.2, opticalProperties.Mus, 0.000001); Assert.AreEqual(0.84, opticalProperties.Musp, 0.000001); Assert.AreEqual(0.8, opticalProperties.G); @@ -104,17 +104,17 @@ public void Test_get_optical_properties_wavelength_array() 600, 700, 1000 }); Assert.AreEqual(1.4, opticalPropertyArray[0].N); - Assert.AreEqual(0.314602, opticalPropertyArray[0].Mua, 0.000001); + Assert.AreEqual(0.314619, opticalPropertyArray[0].Mua, 0.000001); Assert.AreEqual(5.562449, opticalPropertyArray[0].Mus, 0.000001); Assert.AreEqual(1.112489, opticalPropertyArray[0].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[0].G); Assert.AreEqual(1.4, opticalPropertyArray[1].N); - Assert.AreEqual(0.036077, opticalPropertyArray[1].Mua, 0.000001); + Assert.AreEqual(0.036097, opticalPropertyArray[1].Mua, 0.000001); Assert.AreEqual(5.110287, opticalPropertyArray[1].Mus, 0.000001); Assert.AreEqual(1.022057, opticalPropertyArray[1].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[1].G); Assert.AreEqual(1.4, opticalPropertyArray[2].N); - Assert.AreEqual(0.065231, opticalPropertyArray[2].Mua, 0.000001); + Assert.AreEqual(0.067854, opticalPropertyArray[2].Mua, 0.000001); Assert.AreEqual(4.2, opticalPropertyArray[2].Mus, 0.000001); Assert.AreEqual(0.84, opticalPropertyArray[2].Musp, 0.000001); Assert.AreEqual(0.8, opticalPropertyArray[2].G); From 0f9f6c66997d50969275f4a9586b9c17b0f7e7fd Mon Sep 17 00:00:00 2001 From: Lisa Glover Date: Sun, 8 Sep 2024 14:41:10 -0700 Subject: [PATCH 6/8] Update dotnetbuildtest.yml Update versions --- .github/workflows/dotnetbuildtest.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/dotnetbuildtest.yml b/.github/workflows/dotnetbuildtest.yml index ac6f60ca2..c3fe8fe56 100644 --- a/.github/workflows/dotnetbuildtest.yml +++ b/.github/workflows/dotnetbuildtest.yml @@ -18,11 +18,11 @@ jobs: os: [ubuntu-latest, windows-latest, macOS-latest] steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Setup .NET - uses: actions/setup-dotnet@v3 + uses: actions/setup-dotnet@v4 with: - dotnet-version: 6.0.x + dotnet-version: 8.0.x - name: Restore dependencies run: dotnet restore src\\Vts.sln - name: Build From de17ca8953f48dee0862d2970d3d95a73514e410 Mon Sep 17 00:00:00 2001 From: Lisa Glover Date: Sun, 8 Sep 2024 14:46:44 -0700 Subject: [PATCH 7/8] Update dotnetbuildtest.yml Change target solution file --- .github/workflows/dotnetbuildtest.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/dotnetbuildtest.yml b/.github/workflows/dotnetbuildtest.yml index c3fe8fe56..8c2ed1a5e 100644 --- a/.github/workflows/dotnetbuildtest.yml +++ b/.github/workflows/dotnetbuildtest.yml @@ -22,10 +22,10 @@ jobs: - name: Setup .NET uses: actions/setup-dotnet@v4 with: - dotnet-version: 8.0.x + dotnet-version: 6.0.x - name: Restore dependencies - run: dotnet restore src\\Vts.sln + run: dotnet restore src\\VtsLibrary.sln - name: Build - run: dotnet build src\\Vts.sln --no-restore + run: dotnet build src\\VtsLibrary.sln --no-restore - name: Test - run: dotnet test src\\Vts.sln --no-build --verbosity normal + run: dotnet test src\\VtsLibrary.sln --no-build --verbosity normal From fe6dc5d40478789569c8dbb342fc3edd9266f784 Mon Sep 17 00:00:00 2001 From: Lisa Glover Date: Sun, 8 Sep 2024 15:23:15 -0700 Subject: [PATCH 8/8] Update dotnetbuildtest.yml remove Ubuntu and Mac platforms --- .github/workflows/dotnetbuildtest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/dotnetbuildtest.yml b/.github/workflows/dotnetbuildtest.yml index 8c2ed1a5e..d61f89b2c 100644 --- a/.github/workflows/dotnetbuildtest.yml +++ b/.github/workflows/dotnetbuildtest.yml @@ -15,7 +15,7 @@ jobs: runs-on: ${{ matrix.os }} strategy: matrix: - os: [ubuntu-latest, windows-latest, macOS-latest] + os: [windows-latest] steps: - uses: actions/checkout@v4