diff --git a/docs/source/tutorials/discovery.ipynb b/docs/source/tutorials/discovery.ipynb
index b7c89de6..335ff135 100644
--- a/docs/source/tutorials/discovery.ipynb
+++ b/docs/source/tutorials/discovery.ipynb
@@ -2,67 +2,182 @@
"cells": [
{
"cell_type": "markdown",
+ "metadata": {
+ "cell_id": "00000-d3cab687-8c75-48b6-9862-b1215893d8be",
+ "deepnote_cell_type": "markdown",
+ "tags": []
+ },
"source": [
"# Discovery\n",
"\n",
"Required packages: vfb-connect and python-catmaid (pymaid & navis)"
- ],
- "metadata": {
- "tags": [],
- "cell_id": "00000-d3cab687-8c75-48b6-9862-b1215893d8be",
- "deepnote_cell_type": "markdown"
- }
+ ]
},
{
"cell_type": "code",
+ "execution_count": 1,
"metadata": {
- "tags": [],
"cell_id": "00000-8f977ce1-edb3-464f-8d14-37d0507d14dc",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "d547b677",
"execution_millis": 6270,
- "output_cleared": false,
"execution_start": 1614738267818,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "d547b677",
+ "tags": []
},
- "source": [
- "!pip install vfb-connect --upgrade\n",
- "!pip install python-catmaid --upgrade"
- ],
- "execution_count": null,
"outputs": [
{
"name": "stdout",
- "text": "Requirement already up-to-date: vfb-connect ",
- "output_type": "stream"
+ "output_type": "stream",
+ "text": [
+ "Requirement already satisfied: vfb-connect in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (1.2.12.dev34+0ddbd15.dirty)\n",
+ "Collecting vfb-connect\n",
+ " Obtaining dependency information for vfb-connect from https://files.pythonhosted.org/packages/d8/d7/0c7d60d7af8a1f7afc81d46d5805e501721fec36c3b4f726ae958f8671c9/vfb_connect-1.2.12-py3-none-any.whl.metadata\n",
+ " Downloading vfb_connect-1.2.12-py3-none-any.whl.metadata (2.7 kB)\n",
+ "Requirement already satisfied: requests in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from vfb-connect) (2.28.2)\n",
+ "Requirement already satisfied: pandas in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from vfb-connect) (1.3.5)\n",
+ "Requirement already satisfied: jsonpath-rw in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from vfb-connect) (1.4.0)\n",
+ "Requirement already satisfied: ply in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from jsonpath-rw->vfb-connect) (3.11)\n",
+ "Requirement already satisfied: decorator in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from jsonpath-rw->vfb-connect) (5.1.1)\n",
+ "Requirement already satisfied: six in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from jsonpath-rw->vfb-connect) (1.16.0)\n",
+ "Requirement already satisfied: python-dateutil>=2.7.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pandas->vfb-connect) (2.8.2)\n",
+ "Requirement already satisfied: pytz>=2017.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pandas->vfb-connect) (2022.7.1)\n",
+ "Requirement already satisfied: numpy>=1.17.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pandas->vfb-connect) (1.21.6)\n",
+ "Requirement already satisfied: charset-normalizer<4,>=2 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests->vfb-connect) (3.1.0)\n",
+ "Requirement already satisfied: idna<4,>=2.5 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests->vfb-connect) (3.4)\n",
+ "Requirement already satisfied: urllib3<1.27,>=1.21.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests->vfb-connect) (1.26.15)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests->vfb-connect) (2022.12.7)\n",
+ "Downloading vfb_connect-1.2.12-py3-none-any.whl (39 kB)\n",
+ "Installing collected packages: vfb-connect\n",
+ " Attempting uninstall: vfb-connect\n",
+ " Found existing installation: vfb-connect 1.2.12.dev34+0ddbd15.dirty\n",
+ " Uninstalling vfb-connect-1.2.12.dev34+0ddbd15.dirty:\n",
+ " Successfully uninstalled vfb-connect-1.2.12.dev34+0ddbd15.dirty\n",
+ "Successfully installed vfb-connect-1.2.12\n",
+ "Requirement already satisfied: python-catmaid in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (2.0.4)\n",
+ "Collecting python-catmaid\n",
+ " Downloading python_catmaid-2.4.0-py3-none-any.whl (177 kB)\n",
+ "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m177.5/177.5 kB\u001b[0m \u001b[31m2.3 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m00:01\u001b[0m00:01\u001b[0m\n",
+ "\u001b[?25hCollecting navis>=1.0.0 (from python-catmaid)\n",
+ " Downloading navis-1.4.0-py3-none-any.whl (2.4 MB)\n",
+ "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m2.4/2.4 MB\u001b[0m \u001b[31m5.3 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m00:01\u001b[0m00:01\u001b[0m\n",
+ "\u001b[?25hRequirement already satisfied: numpy>=1.16.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (1.21.6)\n",
+ "Requirement already satisfied: networkx>=2.4 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (2.6.3)\n",
+ "Requirement already satisfied: pandas>=1.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (1.3.5)\n",
+ "Requirement already satisfied: requests-futures>=0.9.9 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (1.0.0)\n",
+ "Requirement already satisfied: requests>=2.21.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (2.28.2)\n",
+ "Requirement already satisfied: setuptools>=41.0.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (58.2.0)\n",
+ "Requirement already satisfied: scipy>=1.3.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (1.7.1)\n",
+ "Requirement already satisfied: six>=1.11.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (1.16.0)\n",
+ "Requirement already satisfied: tqdm>=4.50.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (4.62.3)\n",
+ "Requirement already satisfied: psutil>=5.4.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from python-catmaid) (5.8.0)\n",
+ "Requirement already satisfied: h5py>=3.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (3.4.0)\n",
+ "Requirement already satisfied: matplotlib>=3.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (3.4.3)\n",
+ "Requirement already satisfied: morphops>=0.1.11 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.1.12)\n",
+ "Collecting ncollpyde>=0.18 (from navis>=1.0.0->python-catmaid)\n",
+ " Using cached ncollpyde-0.19.0-cp36-abi3-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl (540 kB)\n",
+ "Requirement already satisfied: pint>=0.10 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.17)\n",
+ "Requirement already satisfied: plotly>=4.9 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (5.3.1)\n",
+ "Requirement already satisfied: pynrrd>=0.4.2 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.4.2)\n",
+ "Requirement already satisfied: pypng>=0.0.18 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.0.21)\n",
+ "Requirement already satisfied: seaborn>=0.10 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.11.2)\n",
+ "Requirement already satisfied: typing-extensions>=3.7.4 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (4.5.0)\n",
+ "Requirement already satisfied: trimesh>=3.8 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (3.9.32)\n",
+ "Requirement already satisfied: fuzzywuzzy>=0.18 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.18.0)\n",
+ "Requirement already satisfied: molesq>=0.2.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.4.0)\n",
+ "Requirement already satisfied: rdata>=0.5 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (0.5)\n",
+ "Collecting igraph!=0.10.0,!=0.10.1 (from navis>=1.0.0->python-catmaid)\n",
+ " Obtaining dependency information for igraph!=0.10.0,!=0.10.1 from https://files.pythonhosted.org/packages/40/d6/7ae77b847631bedac753db9040ac1d230bd9405ad3a9d0b2ded66e1a8c15/igraph-0.10.8-cp37-cp37m-macosx_10_9_x86_64.whl.metadata\n",
+ " Downloading igraph-0.10.8-cp37-cp37m-macosx_10_9_x86_64.whl.metadata (3.8 kB)\n",
+ "Requirement already satisfied: skeletor>=1.0.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from navis>=1.0.0->python-catmaid) (1.1.0)\n",
+ "Requirement already satisfied: python-dateutil>=2.7.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pandas>=1.0->python-catmaid) (2.8.2)\n",
+ "Requirement already satisfied: pytz>=2017.3 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pandas>=1.0->python-catmaid) (2022.7.1)\n",
+ "Requirement already satisfied: charset-normalizer<4,>=2 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests>=2.21.0->python-catmaid) (3.1.0)\n",
+ "Requirement already satisfied: idna<4,>=2.5 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests>=2.21.0->python-catmaid) (3.4)\n",
+ "Requirement already satisfied: urllib3<1.27,>=1.21.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests>=2.21.0->python-catmaid) (1.26.15)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from requests>=2.21.0->python-catmaid) (2022.12.7)\n",
+ "Requirement already satisfied: cached-property in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from h5py>=3.1->navis>=1.0.0->python-catmaid) (1.5.2)\n",
+ "Requirement already satisfied: texttable>=1.6.2 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from igraph!=0.10.0,!=0.10.1->navis>=1.0.0->python-catmaid) (1.6.4)\n",
+ "Requirement already satisfied: cycler>=0.10 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from matplotlib>=3.3->navis>=1.0.0->python-catmaid) (0.10.0)\n",
+ "Requirement already satisfied: kiwisolver>=1.0.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from matplotlib>=3.3->navis>=1.0.0->python-catmaid) (1.3.2)\n",
+ "Requirement already satisfied: pillow>=6.2.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from matplotlib>=3.3->navis>=1.0.0->python-catmaid) (8.3.2)\n",
+ "Requirement already satisfied: pyparsing>=2.2.1 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from matplotlib>=3.3->navis>=1.0.0->python-catmaid) (2.4.7)\n",
+ "Requirement already satisfied: packaging in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pint>=0.10->navis>=1.0.0->python-catmaid) (23.0)\n",
+ "Requirement already satisfied: importlib-metadata in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from pint>=0.10->navis>=1.0.0->python-catmaid) (4.8.1)\n",
+ "Requirement already satisfied: tenacity>=6.2.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from plotly>=4.9->navis>=1.0.0->python-catmaid) (8.0.1)\n",
+ "Requirement already satisfied: xarray in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from rdata>=0.5->navis>=1.0.0->python-catmaid) (0.19.0)\n",
+ "Requirement already satisfied: scikit-learn>=0.23 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from skeletor>=1.0.0->navis>=1.0.0->python-catmaid) (1.0)\n",
+ "Requirement already satisfied: python-igraph>=0.8 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from skeletor>=1.0.0->navis>=1.0.0->python-catmaid) (0.9.6)\n",
+ "Requirement already satisfied: joblib>=0.11 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from scikit-learn>=0.23->skeletor>=1.0.0->navis>=1.0.0->python-catmaid) (1.0.1)\n",
+ "Requirement already satisfied: threadpoolctl>=2.0.0 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from scikit-learn>=0.23->skeletor>=1.0.0->navis>=1.0.0->python-catmaid) (3.0.0)\n",
+ "Requirement already satisfied: zipp>=0.5 in /Users/robbiecourt/.pyenv/versions/3.7.5/lib/python3.7/site-packages (from importlib-metadata->pint>=0.10->navis>=1.0.0->python-catmaid) (3.6.0)\n",
+ "Downloading igraph-0.10.8-cp37-cp37m-macosx_10_9_x86_64.whl (1.9 MB)\n",
+ "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m1.9/1.9 MB\u001b[0m \u001b[31m9.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m:00:01\u001b[0m00:01\u001b[0m\n",
+ "\u001b[?25hInstalling collected packages: ncollpyde, igraph, navis, python-catmaid\n",
+ " Attempting uninstall: ncollpyde\n",
+ " Found existing installation: ncollpyde 0.16.0\n",
+ " Uninstalling ncollpyde-0.16.0:\n",
+ " Successfully uninstalled ncollpyde-0.16.0\n",
+ " Attempting uninstall: navis\n",
+ " Found existing installation: navis 0.6.0\n",
+ " Uninstalling navis-0.6.0:\n",
+ " Successfully uninstalled navis-0.6.0\n",
+ " Attempting uninstall: python-catmaid\n",
+ " Found existing installation: python-catmaid 2.0.4\n",
+ " Uninstalling python-catmaid-2.0.4:\n",
+ " Successfully uninstalled python-catmaid-2.0.4\n",
+ "Successfully installed igraph-0.10.8 navis-1.4.0 ncollpyde-0.19.0 python-catmaid-2.4.0\n"
+ ]
}
+ ],
+ "source": [
+ "!pip install vfb-connect --upgrade\n",
+ "!pip install python-catmaid --upgrade"
]
},
{
"cell_type": "markdown",
+ "metadata": {
+ "cell_id": "00000-79bca113-6b64-4597-ad88-b519aea26aea",
+ "deepnote_cell_type": "markdown",
+ "tags": []
+ },
"source": [
"### How to find neurons across datasets\n",
"\n",
"VirtualFlyBrain integrates images and connectomics profiles of neurons from many sources. It classifies and records their properties using a standard, queryable classification ([The Drosophila Anatomy Ontology](https://www.ebi.ac.uk/ols/ontologies/fbbt)). This standardises the names of neuron types across sources, so you don't need to worry about differences in nomenclature uses and supports queries for neurons by their classification. "
- ],
- "metadata": {
- "tags": [],
- "cell_id": "00000-79bca113-6b64-4597-ad88-b519aea26aea",
- "deepnote_cell_type": "markdown"
- }
+ ]
},
{
"cell_type": "code",
+ "execution_count": 2,
"metadata": {
- "tags": [],
"cell_id": "00000-7a8aaee6-8107-4d3e-8262-7fdb8e78edbf",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "558cc218",
"execution_millis": 6091,
- "output_cleared": false,
"execution_start": 1614738274096,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "558cc218",
+ "tags": []
},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "INFO : Global CATMAID instance set. Caching is ON. (pymaid)\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Server is running CATMAID version 2020.02.15-102-gce1dee4\n"
+ ]
+ }
+ ],
"source": [
"# Import libs and initialise API objects\n",
"from vfb_connect.cross_server_tools import VfbConnect\n",
@@ -80,18 +195,15 @@
"\n",
"# Test call to see if connection works \n",
"print(f'Server is running CATMAID version {rm.catmaid_version}')\n"
- ],
- "execution_count": null,
- "outputs": [
- {
- "name": "stderr",
- "text": "WARNING: Could not load OpenGL library.\nINFO : Global CATMAID instance set. Caching is ON. (pymaid)\nServer is running CATMAID version 2020.02.15-905-g93a969b37\n",
- "output_type": "stream"
- }
]
},
{
"cell_type": "markdown",
+ "metadata": {
+ "cell_id": "00001-3d466554-95ec-42b9-af26-4d0c9eee3e2c",
+ "deepnote_cell_type": "markdown",
+ "tags": []
+ },
"source": [
"### Finds neurons by type (classification) across datasets\n",
"\n",
@@ -103,5175 +215,3025 @@
"\n",
"\n",
"Use either the full name or the Symbol to query for neurons:"
- ],
- "metadata": {
- "tags": [],
- "cell_id": "00001-3d466554-95ec-42b9-af26-4d0c9eee3e2c",
- "deepnote_cell_type": "markdown"
- }
+ ]
},
{
"cell_type": "code",
+ "execution_count": 3,
"metadata": {
- "tags": [],
"cell_id": "00002-0f08c5a1-913b-4a33-be18-d83db2c4809b",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "9a2e97a1",
"execution_millis": 522,
- "output_cleared": false,
"execution_start": 1614738280194,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "9a2e97a1",
+ "tags": []
},
- "source": [
- "DA3adPN = vc.get_instances(\"adult Drosulfakinin neuron\", summary=True)\n",
- "pd.DataFrame.from_records(DA3adPN)"
- ],
- "execution_count": null,
"outputs": [
{
- "output_type": "execute_result",
- "execution_count": 3,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 6,
- "column_count": 11,
- "columns": [
- {
- "name": "label",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "DSKMP3_R - 327937328",
- "count": 1
- },
- {
- "name": "DSKMP1A(PVM02)_L - 1260833150",
- "count": 1
- },
- {
- "name": "4 others",
- "count": 4
- }
- ]
- }
- },
- {
- "name": "symbol",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "id",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchjti6",
- "count": 1
- },
- {
- "name": "VFB_jrchjti3",
- "count": 1
- },
- {
- "name": "4 others",
- "count": 4
- }
- ]
- }
- },
- {
- "name": "tags",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "parents_label",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "adult Drosulfakinin neuron",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "parents_id",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "FBbt_00048999",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "accession",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "327937328",
- "count": 1
- },
- {
- "name": "1260833150",
- "count": 1
- },
- {
- "name": "4 others",
- "count": 4
- }
- ]
- }
- },
- {
- "name": "templates",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "count": 4
- },
- {
- "name": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "dataset",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Xu2020NeuronsV1point1",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "license",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "count": 6
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "label": "DSKMP3_R - 327937328",
- "symbol": "",
- "id": "VFB_jrchjti6",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "327937328",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 0
- },
- {
- "label": "DSKMP1A(PVM02)_L - 1260833150",
- "symbol": "",
- "id": "VFB_jrchjti3",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1260833150",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 1
- },
- {
- "label": "DSKMP3_R - 328559607",
- "symbol": "",
- "id": "VFB_jrchjti7",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "328559607",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 2
- },
- {
- "label": "DSKMP1B_R - 1352077058",
- "symbol": "",
- "id": "VFB_jrchjti4",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1352077058",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 3
- },
- {
- "label": "DSKMP1B(PVM02)_L - 1011184205",
- "symbol": "",
- "id": "VFB_jrchjti5",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1011184205",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 4
- },
- {
- "label": "DSKMP1A_R - 1135837629",
- "symbol": "",
- "id": "VFB_jrchjti2",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult Drosulfakinin neuron",
- "parents_id": "FBbt_00048999",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1135837629",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 5
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " label symbol id \\\n0 DSKMP3_R - 327937328 VFB_jrchjti6 \n1 DSKMP1A(PVM02)_L - 1260833150 VFB_jrchjti3 \n2 DSKMP3_R - 328559607 VFB_jrchjti7 \n3 DSKMP1B_R - 1352077058 VFB_jrchjti4 \n4 DSKMP1B(PVM02)_L - 1011184205 VFB_jrchjti5 \n5 DSKMP1A_R - 1135837629 VFB_jrchjti2 \n\n tags \\\n0 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n1 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n2 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n3 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n4 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n5 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n\n parents_label parents_id data_source \\\n0 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n1 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n2 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n3 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n4 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n5 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n\n accession templates dataset \\\n0 327937328 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n1 1260833150 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n2 328559607 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n3 1352077058 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n4 1011184205 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n5 1135837629 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n\n license \n0 https://creativecommons.org/licenses/by/4.0/le... \n1 https://creativecommons.org/licenses/by/4.0/le... \n2 https://creativecommons.org/licenses/by/4.0/le... \n3 https://creativecommons.org/licenses/by/4.0/le... \n4 https://creativecommons.org/licenses/by/4.0/le... \n5 https://creativecommons.org/licenses/by/4.0/le... ",
- "text/html": "
\n\n
\n \n \n | \n label | \n symbol | \n id | \n tags | \n parents_label | \n parents_id | \n data_source | \n accession | \n templates | \n dataset | \n license | \n
\n \n \n \n 0 | \n DSKMP3_R - 327937328 | \n | \n VFB_jrchjti6 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 327937328 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 1 | \n DSKMP1A(PVM02)_L - 1260833150 | \n | \n VFB_jrchjti3 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 1260833150 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 2 | \n DSKMP3_R - 328559607 | \n | \n VFB_jrchjti7 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 328559607 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 3 | \n DSKMP1B_R - 1352077058 | \n | \n VFB_jrchjti4 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 4 | \n DSKMP1B(PVM02)_L - 1011184205 | \n | \n VFB_jrchjti5 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 1011184205 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 5 | \n DSKMP1A_R - 1135837629 | \n | \n VFB_jrchjti2 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult Drosulfakinin neuron | \n FBbt_00048999 | \n neuprint_JRC_Hemibrain_1point1 | \n 1135837629 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " label | \n",
+ " symbol | \n",
+ " id | \n",
+ " tags | \n",
+ " parents_label | \n",
+ " parents_id | \n",
+ " data_source | \n",
+ " accession | \n",
+ " templates | \n",
+ " dataset | \n",
+ " license | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " DSKMP1A(PVM02)_L (FlyEM-HB:1260833150) | \n",
+ " 1260833150 | \n",
+ " VFB_jrchjti3 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1260833150 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " 327937328 | \n",
+ " VFB_jrchjti6 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 327937328 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 2 | \n",
+ " DSKMP3_R (FlyEM-HB:328559607) | \n",
+ " 328559607 | \n",
+ " VFB_jrchjti7 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 328559607 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 3 | \n",
+ " DSKMP1A_R (FlyEM-HB:1135837629) | \n",
+ " 1135837629 | \n",
+ " VFB_jrchjti2 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1135837629 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " 1352077058 | \n",
+ " VFB_jrchjti4 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1352077058 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 5 | \n",
+ " DSKMP1B(PVM02)_L (FlyEM-HB:1011184205) | \n",
+ " 1011184205 | \n",
+ " VFB_jrchjti5 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult Drosulfakinin neuron | \n",
+ " FBbt_00048999 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1011184205 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " label symbol id \\\n",
+ "0 DSKMP1A(PVM02)_L (FlyEM-HB:1260833150) 1260833150 VFB_jrchjti3 \n",
+ "1 DSKMP3_R (FlyEM-HB:327937328) 327937328 VFB_jrchjti6 \n",
+ "2 DSKMP3_R (FlyEM-HB:328559607) 328559607 VFB_jrchjti7 \n",
+ "3 DSKMP1A_R (FlyEM-HB:1135837629) 1135837629 VFB_jrchjti2 \n",
+ "4 DSKMP1B_R (FlyEM-HB:1352077058) 1352077058 VFB_jrchjti4 \n",
+ "5 DSKMP1B(PVM02)_L (FlyEM-HB:1011184205) 1011184205 VFB_jrchjti5 \n",
+ "\n",
+ " tags \\\n",
+ "0 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "1 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "2 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "3 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "4 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "5 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "\n",
+ " parents_label parents_id data_source \\\n",
+ "0 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "1 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "2 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "3 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "4 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "5 adult Drosulfakinin neuron FBbt_00048999 neuprint_JRC_Hemibrain_1point1 \n",
+ "\n",
+ " accession templates dataset \\\n",
+ "0 1260833150 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "1 327937328 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "2 328559607 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "3 1135837629 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "4 1352077058 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "5 1011184205 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "\n",
+ " license \n",
+ "0 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "1 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "2 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "3 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "4 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "5 https://creativecommons.org/licenses/by/4.0/le... "
+ ]
},
- "metadata": {}
+ "execution_count": 3,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "DA3adPN = vc.get_instances(\"adult Drosulfakinin neuron\", summary=True)\n",
+ "pd.DataFrame.from_records(DA3adPN)"
]
},
{
"cell_type": "markdown",
+ "metadata": {
+ "cell_id": "00004-d350500b-89e9-4a83-9add-bb45e436dc1f",
+ "deepnote_cell_type": "markdown",
+ "tags": []
+ },
"source": [
"### Find neurons by location\n",
"\n",
"We can use the same method to search for neurons by location, using simple queries."
- ],
- "metadata": {
- "tags": [],
- "cell_id": "00004-d350500b-89e9-4a83-9add-bb45e436dc1f",
- "deepnote_cell_type": "markdown"
- }
+ ]
},
{
"cell_type": "code",
+ "execution_count": 4,
"metadata": {
- "tags": [],
"cell_id": "00004-dcc17021-330f-4898-877c-cf190a55c379",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "1e03ca3a",
"execution_millis": 1991,
- "output_cleared": false,
"execution_start": 1614738280577,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "1e03ca3a",
+ "tags": []
},
- "source": [
- "# Find neurons by location. The following query works across multiple data sources and both sides of the brain. \n",
- "# Results may be incomplete & may include minor overlap inferred from low synapse counts\n",
- "\n",
- "neurons_in_DA3 = vc.get_instances(\"'neuron' that 'overlaps' some 'antennal lobe glomerulus DA3'\", summary=True)\n",
- "neurons_in_DA3_tab = pd.DataFrame.from_records(neurons_in_DA3)\n",
- "neurons_in_DA3_tab[0:5]\n"
- ],
- "execution_count": null,
"outputs": [
{
"name": "stdout",
- "text": "Running query: FBbt:00005106 that RO:0002131 some FBbt:00003934\nQuery URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00005106+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\nQuery results: 158\n",
- "output_type": "stream"
+ "output_type": "stream",
+ "text": [
+ "Running query: FBbt:00005106 that RO:0002131 some FBbt:00003934\n",
+ "Query URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00005106+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\n",
+ "Query results: 159\n"
+ ]
},
{
- "output_type": "execute_result",
- "execution_count": 4,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 5,
- "column_count": 11,
- "columns": [
- {
- "name": "label",
- "dtype": "object",
- "stats": {
- "unique_count": 5,
- "nan_count": 0,
- "categories": [
- {
- "name": "lLN2T_a(Tortuous)_R - 5813056598",
- "count": 1
- },
- {
- "name": "ORN_DL3_R - 1671625186",
- "count": 1
- },
- {
- "name": "3 others",
- "count": 3
- }
- ]
- }
- },
- {
- "name": "symbol",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 5
- }
- ]
- }
- },
- {
- "name": "id",
- "dtype": "object",
- "stats": {
- "unique_count": 5,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchk8bi",
- "count": 1
- },
- {
- "name": "VFB_jrchk1hj",
- "count": 1
- },
- {
- "name": "3 others",
- "count": 3
- }
- ]
- }
- },
- {
- "name": "tags",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "count": 2
- },
- {
- "name": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|Sensory_neuron|has_region_connectivity|Nervous_system|Neuron",
- "count": 1
- },
- {
- "name": "2 others",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "parents_label",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "adult antennal lobe lateral local neuron 2T",
- "count": 2
- },
- {
- "name": "adult olfactory receptor neuron Or65",
- "count": 1
- },
- {
- "name": "2 others",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "parents_id",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "FBbt_00049816",
- "count": 2
- },
- {
- "name": "FBbt_00067011",
- "count": 1
- },
- {
- "name": "2 others",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 4
- },
- {
- "name": "catmaid_fafb",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "accession",
- "dtype": "object",
- "stats": {
- "unique_count": 5,
- "nan_count": 0,
- "categories": [
- {
- "name": "5813056598",
- "count": 1
- },
- {
- "name": "1671625186",
- "count": 1
- },
- {
- "name": "3 others",
- "count": 3
- }
- ]
- }
- },
- {
- "name": "templates",
- "dtype": "object",
- "stats": {
- "unique_count": 3,
- "nan_count": 0,
- "categories": [
- {
- "name": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "count": 3
- },
- {
- "name": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "count": 1
- },
- {
- "name": "JRC2018Unisex",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "dataset",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "Xu2020NeuronsV1point1",
- "count": 4
- },
- {
- "name": "BatesSchlegel2020",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "license",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "count": 4
- },
- {
- "name": "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "label": "lLN2T_a(Tortuous)_R - 5813056598",
- "symbol": "",
- "id": "VFB_jrchk8bi",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813056598",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 0
- },
- {
- "label": "ORN_DL3_R - 1671625186",
- "symbol": "",
- "id": "VFB_jrchk1hj",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|Sensory_neuron|has_region_connectivity|Nervous_system|Neuron",
- "parents_label": "adult olfactory receptor neuron Or65",
- "parents_id": "FBbt_00067011",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1671625186",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 1
- },
- {
- "label": "DA4m_adPN_R - 574037266",
- "symbol": "",
- "id": "VFB_jrchjtdq",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Cholinergic|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe projection neuron DA4m adPN",
- "parents_id": "FBbt_00047714",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "574037266",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 2
- },
- {
- "label": "Uniglomerular mALT DA3 adPN#L1 (FAFB:2449792)",
- "symbol": "",
- "id": "VFB_0010123h",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Cholinergic|Individual|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe projection neuron DA3 adPN",
- "parents_id": "FBbt_00100384",
- "data_source": "catmaid_fafb",
- "accession": "2449792",
- "templates": "JRC2018Unisex",
- "dataset": "BatesSchlegel2020",
- "license": "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
- "_deepnote_index_column": 3
- },
- {
- "label": "lLN2T_e(Tortuous)_R - 1699974843",
- "symbol": "",
- "id": "VFB_jrchk8br",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1699974843",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 4
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " label symbol id \\\n0 lLN2T_a(Tortuous)_R - 5813056598 VFB_jrchk8bi \n1 ORN_DL3_R - 1671625186 VFB_jrchk1hj \n2 DA4m_adPN_R - 574037266 VFB_jrchjtdq \n3 Uniglomerular mALT DA3 adPN#L1 (FAFB:2449792) VFB_0010123h \n4 lLN2T_e(Tortuous)_R - 1699974843 VFB_jrchk8br \n\n tags \\\n0 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n1 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n2 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n3 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n4 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n\n parents_label parents_id \\\n0 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n1 adult olfactory receptor neuron Or65 FBbt_00067011 \n2 adult antennal lobe projection neuron DA4m adPN FBbt_00047714 \n3 adult antennal lobe projection neuron DA3 adPN FBbt_00100384 \n4 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n\n data_source accession \\\n0 neuprint_JRC_Hemibrain_1point1 5813056598 \n1 neuprint_JRC_Hemibrain_1point1 1671625186 \n2 neuprint_JRC_Hemibrain_1point1 574037266 \n3 catmaid_fafb 2449792 \n4 neuprint_JRC_Hemibrain_1point1 1699974843 \n\n templates dataset \\\n0 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n1 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n2 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n3 JRC2018Unisex BatesSchlegel2020 \n4 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n\n license \n0 https://creativecommons.org/licenses/by/4.0/le... \n1 https://creativecommons.org/licenses/by/4.0/le... \n2 https://creativecommons.org/licenses/by/4.0/le... \n3 https://creativecommons.org/licenses/by-sa/4.0... \n4 https://creativecommons.org/licenses/by/4.0/le... ",
- "text/html": "\n\n
\n \n \n | \n label | \n symbol | \n id | \n tags | \n parents_label | \n parents_id | \n data_source | \n accession | \n templates | \n dataset | \n license | \n
\n \n \n \n 0 | \n lLN2T_a(Tortuous)_R - 5813056598 | \n | \n VFB_jrchk8bi | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813056598 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 1 | \n ORN_DL3_R - 1671625186 | \n | \n VFB_jrchk1hj | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult olfactory receptor neuron Or65 | \n FBbt_00067011 | \n neuprint_JRC_Hemibrain_1point1 | \n 1671625186 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 2 | \n DA4m_adPN_R - 574037266 | \n | \n VFB_jrchjtdq | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe projection neuron DA4m adPN | \n FBbt_00047714 | \n neuprint_JRC_Hemibrain_1point1 | \n 574037266 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 3 | \n Uniglomerular mALT DA3 adPN#L1 (FAFB:2449792) | \n | \n VFB_0010123h | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe projection neuron DA3 adPN | \n FBbt_00100384 | \n catmaid_fafb | \n 2449792 | \n JRC2018Unisex | \n BatesSchlegel2020 | \n https://creativecommons.org/licenses/by-sa/4.0... | \n
\n \n 4 | \n lLN2T_e(Tortuous)_R - 1699974843 | \n | \n VFB_jrchk8br | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1699974843 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " label | \n",
+ " symbol | \n",
+ " id | \n",
+ " tags | \n",
+ " parents_label | \n",
+ " parents_id | \n",
+ " data_source | \n",
+ " accession | \n",
+ " templates | \n",
+ " dataset | \n",
+ " license | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " ORN_DA1_R (FlyEM-HB:1703682799) | \n",
+ " 1703682799 | \n",
+ " VFB_jrchk15e | \n",
+ " Entity|Adult|Anatomy|Cell|Chemosensory_system|... | \n",
+ " adult olfactory receptor neuron Or67d | \n",
+ " FBbt_00067031 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1703682799 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " ORN_DL4_R (FlyEM-HB:1671271059) | \n",
+ " 1671271059 | \n",
+ " VFB_jrchk1km | \n",
+ " Entity|Adult|Anatomy|Cell|Chemosensory_system|... | \n",
+ " adult olfactory receptor neuron Or49a/85f | \n",
+ " FBbt_00067055 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1671271059 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 2 | \n",
+ " ORN_DA1_R (FlyEM-HB:1735054607) | \n",
+ " 1735054607 | \n",
+ " VFB_jrchk13v | \n",
+ " Entity|Adult|Anatomy|Cell|Chemosensory_system|... | \n",
+ " adult olfactory receptor neuron Or67d | \n",
+ " FBbt_00067031 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1735054607 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 3 | \n",
+ " v2LN35_R (FlyEM-HB:1733056086) | \n",
+ " 1733056086 | \n",
+ " VFB_jrchk8ew | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron v2LN35 | \n",
+ " FBbt_20003766 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1733056086 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 4 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) | \n",
+ " 5813032595 | \n",
+ " VFB_jrchk8bd | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813032595 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " label symbol id \\\n",
+ "0 ORN_DA1_R (FlyEM-HB:1703682799) 1703682799 VFB_jrchk15e \n",
+ "1 ORN_DL4_R (FlyEM-HB:1671271059) 1671271059 VFB_jrchk1km \n",
+ "2 ORN_DA1_R (FlyEM-HB:1735054607) 1735054607 VFB_jrchk13v \n",
+ "3 v2LN35_R (FlyEM-HB:1733056086) 1733056086 VFB_jrchk8ew \n",
+ "4 lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) 5813032595 VFB_jrchk8bd \n",
+ "\n",
+ " tags \\\n",
+ "0 Entity|Adult|Anatomy|Cell|Chemosensory_system|... \n",
+ "1 Entity|Adult|Anatomy|Cell|Chemosensory_system|... \n",
+ "2 Entity|Adult|Anatomy|Cell|Chemosensory_system|... \n",
+ "3 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "4 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "\n",
+ " parents_label parents_id \\\n",
+ "0 adult olfactory receptor neuron Or67d FBbt_00067031 \n",
+ "1 adult olfactory receptor neuron Or49a/85f FBbt_00067055 \n",
+ "2 adult olfactory receptor neuron Or67d FBbt_00067031 \n",
+ "3 adult antennal lobe local neuron v2LN35 FBbt_20003766 \n",
+ "4 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "\n",
+ " data_source accession \\\n",
+ "0 neuprint_JRC_Hemibrain_1point1 1703682799 \n",
+ "1 neuprint_JRC_Hemibrain_1point1 1671271059 \n",
+ "2 neuprint_JRC_Hemibrain_1point1 1735054607 \n",
+ "3 neuprint_JRC_Hemibrain_1point1 1733056086 \n",
+ "4 neuprint_JRC_Hemibrain_1point1 5813032595 \n",
+ "\n",
+ " templates dataset \\\n",
+ "0 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "1 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "2 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "3 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "4 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "\n",
+ " license \n",
+ "0 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "1 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "2 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "3 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "4 https://creativecommons.org/licenses/by/4.0/le... "
+ ]
},
- "metadata": {}
+ "execution_count": 4,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "# Find neurons by location. The following query works across multiple data sources and both sides of the brain. \n",
+ "# Results may be incomplete & may include minor overlap inferred from low synapse counts\n",
+ "\n",
+ "neurons_in_DA3 = vc.get_instances(\"'neuron' that 'overlaps' some 'antennal lobe glomerulus DA3'\", summary=True)\n",
+ "neurons_in_DA3_tab = pd.DataFrame.from_records(neurons_in_DA3)\n",
+ "neurons_in_DA3_tab[0:5]\n"
]
},
{
"cell_type": "code",
+ "execution_count": 5,
"metadata": {
- "tags": [],
"cell_id": "00006-d14e7552-74de-47db-b0df-2cd4880e2d37",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "1d3a22e2",
"execution_millis": 3176,
- "output_cleared": false,
"execution_start": 1614738282570,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "1d3a22e2",
+ "tags": []
},
- "source": [
- "# Find local interneurons (intrinsic neurons) of the AL, overlapping DA3:\n",
- "\n",
- "local_in_DA3 = vc.get_instances(\"'local interneuron of adult antennal lobe' that 'overlaps' some 'antennal lobe glomerulus DA3'\",\n",
- " summary=True)\n",
- "local_in_DA3_tab = pd.DataFrame.from_records(local_in_DA3)\n",
- "local_in_DA3_tab"
- ],
- "execution_count": null,
"outputs": [
{
"name": "stdout",
- "text": "Running query: FBbt:00007390 that RO:0002131 some FBbt:00003934\nQuery URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00007390+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\nQuery results: 53\n",
- "output_type": "stream"
+ "output_type": "stream",
+ "text": [
+ "Running query: FBbt:00007390 that RO:0002131 some FBbt:00003934\n",
+ "Query URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00007390+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\n",
+ "Query results: 53\n"
+ ]
},
{
- "output_type": "execute_result",
- "execution_count": 5,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 53,
- "column_count": 11,
- "columns": [
- {
- "name": "label",
- "dtype": "object",
- "stats": {
- "unique_count": 53,
- "nan_count": 0,
- "categories": [
- {
- "name": "lLN16b_R - 1887168462",
- "count": 1
- },
- {
- "name": "lLN1_c_R - 5813047691",
- "count": 1
- },
- {
- "name": "51 others",
- "count": 51
- }
- ]
- }
- },
- {
- "name": "symbol",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 53
- }
- ]
- }
- },
- {
- "name": "id",
- "dtype": "object",
- "stats": {
- "unique_count": 53,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchk89w",
- "count": 1
- },
- {
- "name": "VFB_jrchk8ae",
- "count": 1
- },
- {
- "name": "51 others",
- "count": 51
- }
- ]
- }
- },
- {
- "name": "tags",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "count": 53
- }
- ]
- }
- },
- {
- "name": "parents_label",
- "dtype": "object",
- "stats": {
- "unique_count": 7,
- "nan_count": 0,
- "categories": [
- {
- "name": "adult local interneuron of the lateral ALl1 neuroblast",
- "count": 21
- },
- {
- "name": "adult antennal lobe lateral local neuron 2T",
- "count": 11
- },
- {
- "name": "5 others",
- "count": 21
- }
- ]
- }
- },
- {
- "name": "parents_id",
- "dtype": "object",
- "stats": {
- "unique_count": 7,
- "nan_count": 0,
- "categories": [
- {
- "name": "FBbt_00007394",
- "count": 21
- },
- {
- "name": "FBbt_00049816",
- "count": 11
- },
- {
- "name": "5 others",
- "count": 21
- }
- ]
- }
- },
- {
- "name": "data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 53
- }
- ]
- }
- },
- {
- "name": "accession",
- "dtype": "object",
- "stats": {
- "unique_count": 53,
- "nan_count": 0,
- "categories": [
- {
- "name": "1887168462",
- "count": 1
- },
- {
- "name": "5813047691",
- "count": 1
- },
- {
- "name": "51 others",
- "count": 51
- }
- ]
- }
- },
- {
- "name": "templates",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "count": 30
- },
- {
- "name": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "count": 23
- }
- ]
- }
- },
- {
- "name": "dataset",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Xu2020NeuronsV1point1",
- "count": 53
- }
- ]
- }
- },
- {
- "name": "license",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "count": 53
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "label": "lLN16b_R - 1887168462",
- "symbol": "",
- "id": "VFB_jrchk89w",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1887168462",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 0
- },
- {
- "label": "lLN1_c_R - 5813047691",
- "symbol": "",
- "id": "VFB_jrchk8ae",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813047691",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 1
- },
- {
- "label": "lLN2S(Star)_R - 1670627928",
- "symbol": "",
- "id": "VFB_jrchk8bb",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1670627928",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 2
- },
- {
- "label": "lLN2F_b(Full)_R - 5813024698",
- "symbol": "",
- "id": "VFB_jrchk8an",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2F",
- "parents_id": "FBbt_00049812",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813024698",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 3
- },
- {
- "label": "lLN2T_c(Tortuous)_R - 1671292719",
- "symbol": "",
- "id": "VFB_jrchk8bo",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1671292719",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 4
- },
- {
- "label": "lLN1_c_R - 5813062199",
- "symbol": "",
- "id": "VFB_jrchk8af",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813062199",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 5
- },
- {
- "label": "lLN1_a_R - 5813130064",
- "symbol": "",
- "id": "VFB_jrchk8a4",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813130064",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 6
- },
- {
- "label": "lLN1_c_R - 1702651358",
- "symbol": "",
- "id": "VFB_jrchk8aj",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1702651358",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 7
- },
- {
- "label": "lLN2T_e(Tortuous)_R - 1640922516",
- "symbol": "",
- "id": "VFB_jrchk8bs",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1640922516",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 8
- },
- {
- "label": "lLN11_R - 1670278227",
- "symbol": "",
- "id": "VFB_jrchk89e",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1670278227",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 9
- },
- {
- "label": "lLN2P_c(Patchy)_R - 2105086391",
- "symbol": "",
- "id": "VFB_jrchk8b0",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2P",
- "parents_id": "FBbt_00049813",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "2105086391",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 10
- },
- {
- "label": "lLN2T_b(Tortuous)_R - 1640572741",
- "symbol": "",
- "id": "VFB_jrchk8bl",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1640572741",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 11
- },
- {
- "label": "lLN1_c_R - 1578826464",
- "symbol": "",
- "id": "VFB_jrchk8ah",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1578826464",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 12
- },
- {
- "label": "lLN2P_a(Patchy)_R - 2041621893",
- "symbol": "",
- "id": "VFB_jrchk8ao",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2P",
- "parents_id": "FBbt_00049813",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "2041621893",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 13
- },
- {
- "label": "lLN2S(Star)_R - 1762359683",
- "symbol": "",
- "id": "VFB_jrchk8bc",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1762359683",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 14
- },
- {
- "label": "lLN1_b_R - 5813054622",
- "symbol": "",
- "id": "VFB_jrchk8a8",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813054622",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 15
- },
- {
- "label": "lLN2F_a(Full)_R - 1670287030",
- "symbol": "",
- "id": "VFB_jrchk8al",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2F",
- "parents_id": "FBbt_00049812",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1670287030",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 16
- },
- {
- "label": "lLN12a_R - 1826445251",
- "symbol": "",
- "id": "VFB_jrchk89g",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1826445251",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 17
- },
- {
- "label": "lLN11_R - 2040301572",
- "symbol": "",
- "id": "VFB_jrchk89d",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "2040301572",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 18
- },
- {
- "label": "il3LN6_R - 5813018460",
- "symbol": "",
- "id": "VFB_jrchk88v",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813018460",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 19
- },
- {
- "label": "lLN2R_b(Regional)_R - 5813076969",
- "symbol": "",
- "id": "VFB_jrchk8b6",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2R",
- "parents_id": "FBbt_00049814",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813076969",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 20
- },
- {
- "label": "lLN16a_R - 1702318692",
- "symbol": "",
- "id": "VFB_jrchk89t",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1702318692",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 21
- },
- {
- "label": "lLN2T_d(Tortuous)_R - 1667251683",
- "symbol": "",
- "id": "VFB_jrchk8bp",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1667251683",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 22
- },
- {
- "label": "lLN2R_b(Regional)_R - 1702305987",
- "symbol": "",
- "id": "VFB_jrchk8b5",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2R",
- "parents_id": "FBbt_00049814",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1702305987",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 23
- },
- {
- "label": "v2LN35_R - 1733056086",
- "symbol": "",
- "id": "VFB_jrchk8ew",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1733056086",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 24
- },
- {
- "label": "lLN1_b_R - 1610530558",
- "symbol": "",
- "id": "VFB_jrchk8ac",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1610530558",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 25
- },
- {
- "label": "lLN2S(Star)_R - 1640922754",
- "symbol": "",
- "id": "VFB_jrchk8b8",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1640922754",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 26
- },
- {
- "label": "lLN1_c_R - 1824101645",
- "symbol": "",
- "id": "VFB_jrchk8ag",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1824101645",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 27
- },
- {
- "label": "lLN1_c_R - 1547454812",
- "symbol": "",
- "id": "VFB_jrchk8ai",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1547454812",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 28
- },
- {
- "label": "lLN1_b_R - 5813069055",
- "symbol": "",
- "id": "VFB_jrchk8aa",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813069055",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 29
- },
- {
- "label": "lLN1_b_R - 1642623277",
- "symbol": "",
- "id": "VFB_jrchk8ad",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1642623277",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 30
- },
- {
- "label": "lLN2T_a(Tortuous)_R - 5813054726",
- "symbol": "",
- "id": "VFB_jrchk8bh",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813054726",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 31
- },
- {
- "label": "lLN2F_b(Full)_R - 1640909284",
- "symbol": "",
- "id": "VFB_jrchk8am",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2F",
- "parents_id": "FBbt_00049812",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1640909284",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 32
- },
- {
- "label": "lLN2F_a(Full)_R - 5901218894",
- "symbol": "",
- "id": "VFB_jrchk8ak",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2F",
- "parents_id": "FBbt_00049812",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5901218894",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 33
- },
- {
- "label": "lLN2T_e(Tortuous)_R - 1699974843",
- "symbol": "",
- "id": "VFB_jrchk8br",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1699974843",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 34
- },
- {
- "label": "lLN10_R - 1825789179",
- "symbol": "",
- "id": "VFB_jrchk89b",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1825789179",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 35
- },
- {
- "label": "lLN2S(Star)_R - 1702306037",
- "symbol": "",
- "id": "VFB_jrchk8b7",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1702306037",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 36
- },
- {
- "label": "lLN2S(Star)_R - 1732995501",
- "symbol": "",
- "id": "VFB_jrchk8ba",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1732995501",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 37
- },
- {
- "label": "lLN2S(Star)_R - 5813069085",
- "symbol": "",
- "id": "VFB_jrchk8b9",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2S",
- "parents_id": "FBbt_00049815",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813069085",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 38
- },
- {
- "label": "v2LN3b_R - 1888199872",
- "symbol": "",
- "id": "VFB_jrchk8fg",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1888199872",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 39
- },
- {
- "label": "lLN1_b_R - 1640887603",
- "symbol": "",
- "id": "VFB_jrchk8a6",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1640887603",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 40
- },
- {
- "label": "lLN1_b_R - 5813078440",
- "symbol": "",
- "id": "VFB_jrchk8a7",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813078440",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 41
- },
- {
- "label": "lLN2T_b(Tortuous)_R - 5813034493",
- "symbol": "",
- "id": "VFB_jrchk8bm",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813034493",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 42
- },
- {
- "label": "lLN1_b_R - 5813054777",
- "symbol": "",
- "id": "VFB_jrchk8a9",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813054777",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 43
- },
- {
- "label": "v2LN30_R - 1671620613",
- "symbol": "",
- "id": "VFB_jrchk8e8",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1671620613",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 44
- },
- {
- "label": "v2LN3b_R - 5813034455",
- "symbol": "",
- "id": "VFB_jrchk8ff",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813034455",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 45
- },
- {
- "label": "lLN2T_a(Tortuous)_R - 5813032595",
- "symbol": "",
- "id": "VFB_jrchk8bd",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813032595",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 46
- },
- {
- "label": "lLN2T_a(Tortuous)_R - 5813056598",
- "symbol": "",
- "id": "VFB_jrchk8bi",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813056598",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 47
- },
- {
- "label": "lLN1_b_R - 5813054725",
- "symbol": "",
- "id": "VFB_jrchk8ab",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult local interneuron of the lateral ALl1 neuroblast",
- "parents_id": "FBbt_00007394",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813054725",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 48
- },
- {
- "label": "lLN2P_b(Patchy)_R - 1946178096",
- "symbol": "",
- "id": "VFB_jrchk8au",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2P",
- "parents_id": "FBbt_00049813",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1946178096",
- "templates": "JRC2018Unisex|JRC_FlyEM_Hemibrain",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 49
- },
- {
- "label": "lLN2T_a(Tortuous)_R - 5813055277",
- "symbol": "",
- "id": "VFB_jrchk8bf",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813055277",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 50
- },
- {
- "label": "l2LN18_R - 5813054773",
- "symbol": "",
- "id": "VFB_jrchk891",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "local interneuron of adult antennal lobe",
- "parents_id": "FBbt_00007390",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "5813054773",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 51
- },
- {
- "label": "lLN2T_a(Tortuous)_R - 1762354941",
- "symbol": "",
- "id": "VFB_jrchk8bg",
- "tags": "Entity|has_image|Adult|Anatomy|has_neuron_connectivity|Cell|Individual|has_region_connectivity|NBLAST|Nervous_system|Neuron",
- "parents_label": "adult antennal lobe lateral local neuron 2T",
- "parents_id": "FBbt_00049816",
- "data_source": "neuprint_JRC_Hemibrain_1point1",
- "accession": "1762354941",
- "templates": "JRC_FlyEM_Hemibrain|JRC2018Unisex",
- "dataset": "Xu2020NeuronsV1point1",
- "license": "https://creativecommons.org/licenses/by/4.0/legalcode",
- "_deepnote_index_column": 52
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " label symbol id \\\n0 lLN16b_R - 1887168462 VFB_jrchk89w \n1 lLN1_c_R - 5813047691 VFB_jrchk8ae \n2 lLN2S(Star)_R - 1670627928 VFB_jrchk8bb \n3 lLN2F_b(Full)_R - 5813024698 VFB_jrchk8an \n4 lLN2T_c(Tortuous)_R - 1671292719 VFB_jrchk8bo \n5 lLN1_c_R - 5813062199 VFB_jrchk8af \n6 lLN1_a_R - 5813130064 VFB_jrchk8a4 \n7 lLN1_c_R - 1702651358 VFB_jrchk8aj \n8 lLN2T_e(Tortuous)_R - 1640922516 VFB_jrchk8bs \n9 lLN11_R - 1670278227 VFB_jrchk89e \n10 lLN2P_c(Patchy)_R - 2105086391 VFB_jrchk8b0 \n11 lLN2T_b(Tortuous)_R - 1640572741 VFB_jrchk8bl \n12 lLN1_c_R - 1578826464 VFB_jrchk8ah \n13 lLN2P_a(Patchy)_R - 2041621893 VFB_jrchk8ao \n14 lLN2S(Star)_R - 1762359683 VFB_jrchk8bc \n15 lLN1_b_R - 5813054622 VFB_jrchk8a8 \n16 lLN2F_a(Full)_R - 1670287030 VFB_jrchk8al \n17 lLN12a_R - 1826445251 VFB_jrchk89g \n18 lLN11_R - 2040301572 VFB_jrchk89d \n19 il3LN6_R - 5813018460 VFB_jrchk88v \n20 lLN2R_b(Regional)_R - 5813076969 VFB_jrchk8b6 \n21 lLN16a_R - 1702318692 VFB_jrchk89t \n22 lLN2T_d(Tortuous)_R - 1667251683 VFB_jrchk8bp \n23 lLN2R_b(Regional)_R - 1702305987 VFB_jrchk8b5 \n24 v2LN35_R - 1733056086 VFB_jrchk8ew \n25 lLN1_b_R - 1610530558 VFB_jrchk8ac \n26 lLN2S(Star)_R - 1640922754 VFB_jrchk8b8 \n27 lLN1_c_R - 1824101645 VFB_jrchk8ag \n28 lLN1_c_R - 1547454812 VFB_jrchk8ai \n29 lLN1_b_R - 5813069055 VFB_jrchk8aa \n30 lLN1_b_R - 1642623277 VFB_jrchk8ad \n31 lLN2T_a(Tortuous)_R - 5813054726 VFB_jrchk8bh \n32 lLN2F_b(Full)_R - 1640909284 VFB_jrchk8am \n33 lLN2F_a(Full)_R - 5901218894 VFB_jrchk8ak \n34 lLN2T_e(Tortuous)_R - 1699974843 VFB_jrchk8br \n35 lLN10_R - 1825789179 VFB_jrchk89b \n36 lLN2S(Star)_R - 1702306037 VFB_jrchk8b7 \n37 lLN2S(Star)_R - 1732995501 VFB_jrchk8ba \n38 lLN2S(Star)_R - 5813069085 VFB_jrchk8b9 \n39 v2LN3b_R - 1888199872 VFB_jrchk8fg \n40 lLN1_b_R - 1640887603 VFB_jrchk8a6 \n41 lLN1_b_R - 5813078440 VFB_jrchk8a7 \n42 lLN2T_b(Tortuous)_R - 5813034493 VFB_jrchk8bm \n43 lLN1_b_R - 5813054777 VFB_jrchk8a9 \n44 v2LN30_R - 1671620613 VFB_jrchk8e8 \n45 v2LN3b_R - 5813034455 VFB_jrchk8ff \n46 lLN2T_a(Tortuous)_R - 5813032595 VFB_jrchk8bd \n47 lLN2T_a(Tortuous)_R - 5813056598 VFB_jrchk8bi \n48 lLN1_b_R - 5813054725 VFB_jrchk8ab \n49 lLN2P_b(Patchy)_R - 1946178096 VFB_jrchk8au \n50 lLN2T_a(Tortuous)_R - 5813055277 VFB_jrchk8bf \n51 l2LN18_R - 5813054773 VFB_jrchk891 \n52 lLN2T_a(Tortuous)_R - 1762354941 VFB_jrchk8bg \n\n tags \\\n0 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n1 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n2 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n3 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n4 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n5 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n6 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n7 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n8 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n9 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n10 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n11 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n12 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n13 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n14 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n15 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n16 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n17 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n18 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n19 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n20 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n21 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n22 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n23 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n24 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n25 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n26 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n27 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n28 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n29 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n30 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n31 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n32 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n33 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n34 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n35 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n36 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n37 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n38 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n39 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n40 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n41 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n42 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n43 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n44 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n45 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n46 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n47 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n48 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n49 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n50 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n51 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n52 Entity|has_image|Adult|Anatomy|has_neuron_conn... \n\n parents_label parents_id \\\n0 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n1 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n2 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n3 adult antennal lobe lateral local neuron 2F FBbt_00049812 \n4 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n5 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n6 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n7 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n8 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n9 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n10 adult antennal lobe lateral local neuron 2P FBbt_00049813 \n11 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n12 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n13 adult antennal lobe lateral local neuron 2P FBbt_00049813 \n14 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n15 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n16 adult antennal lobe lateral local neuron 2F FBbt_00049812 \n17 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n18 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n19 local interneuron of adult antennal lobe FBbt_00007390 \n20 adult antennal lobe lateral local neuron 2R FBbt_00049814 \n21 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n22 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n23 adult antennal lobe lateral local neuron 2R FBbt_00049814 \n24 local interneuron of adult antennal lobe FBbt_00007390 \n25 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n26 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n27 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n28 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n29 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n30 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n31 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n32 adult antennal lobe lateral local neuron 2F FBbt_00049812 \n33 adult antennal lobe lateral local neuron 2F FBbt_00049812 \n34 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n35 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n36 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n37 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n38 adult antennal lobe lateral local neuron 2S FBbt_00049815 \n39 local interneuron of adult antennal lobe FBbt_00007390 \n40 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n41 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n42 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n43 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n44 local interneuron of adult antennal lobe FBbt_00007390 \n45 local interneuron of adult antennal lobe FBbt_00007390 \n46 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n47 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n48 adult local interneuron of the lateral ALl1 ne... FBbt_00007394 \n49 adult antennal lobe lateral local neuron 2P FBbt_00049813 \n50 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n51 local interneuron of adult antennal lobe FBbt_00007390 \n52 adult antennal lobe lateral local neuron 2T FBbt_00049816 \n\n data_source accession \\\n0 neuprint_JRC_Hemibrain_1point1 1887168462 \n1 neuprint_JRC_Hemibrain_1point1 5813047691 \n2 neuprint_JRC_Hemibrain_1point1 1670627928 \n3 neuprint_JRC_Hemibrain_1point1 5813024698 \n4 neuprint_JRC_Hemibrain_1point1 1671292719 \n5 neuprint_JRC_Hemibrain_1point1 5813062199 \n6 neuprint_JRC_Hemibrain_1point1 5813130064 \n7 neuprint_JRC_Hemibrain_1point1 1702651358 \n8 neuprint_JRC_Hemibrain_1point1 1640922516 \n9 neuprint_JRC_Hemibrain_1point1 1670278227 \n10 neuprint_JRC_Hemibrain_1point1 2105086391 \n11 neuprint_JRC_Hemibrain_1point1 1640572741 \n12 neuprint_JRC_Hemibrain_1point1 1578826464 \n13 neuprint_JRC_Hemibrain_1point1 2041621893 \n14 neuprint_JRC_Hemibrain_1point1 1762359683 \n15 neuprint_JRC_Hemibrain_1point1 5813054622 \n16 neuprint_JRC_Hemibrain_1point1 1670287030 \n17 neuprint_JRC_Hemibrain_1point1 1826445251 \n18 neuprint_JRC_Hemibrain_1point1 2040301572 \n19 neuprint_JRC_Hemibrain_1point1 5813018460 \n20 neuprint_JRC_Hemibrain_1point1 5813076969 \n21 neuprint_JRC_Hemibrain_1point1 1702318692 \n22 neuprint_JRC_Hemibrain_1point1 1667251683 \n23 neuprint_JRC_Hemibrain_1point1 1702305987 \n24 neuprint_JRC_Hemibrain_1point1 1733056086 \n25 neuprint_JRC_Hemibrain_1point1 1610530558 \n26 neuprint_JRC_Hemibrain_1point1 1640922754 \n27 neuprint_JRC_Hemibrain_1point1 1824101645 \n28 neuprint_JRC_Hemibrain_1point1 1547454812 \n29 neuprint_JRC_Hemibrain_1point1 5813069055 \n30 neuprint_JRC_Hemibrain_1point1 1642623277 \n31 neuprint_JRC_Hemibrain_1point1 5813054726 \n32 neuprint_JRC_Hemibrain_1point1 1640909284 \n33 neuprint_JRC_Hemibrain_1point1 5901218894 \n34 neuprint_JRC_Hemibrain_1point1 1699974843 \n35 neuprint_JRC_Hemibrain_1point1 1825789179 \n36 neuprint_JRC_Hemibrain_1point1 1702306037 \n37 neuprint_JRC_Hemibrain_1point1 1732995501 \n38 neuprint_JRC_Hemibrain_1point1 5813069085 \n39 neuprint_JRC_Hemibrain_1point1 1888199872 \n40 neuprint_JRC_Hemibrain_1point1 1640887603 \n41 neuprint_JRC_Hemibrain_1point1 5813078440 \n42 neuprint_JRC_Hemibrain_1point1 5813034493 \n43 neuprint_JRC_Hemibrain_1point1 5813054777 \n44 neuprint_JRC_Hemibrain_1point1 1671620613 \n45 neuprint_JRC_Hemibrain_1point1 5813034455 \n46 neuprint_JRC_Hemibrain_1point1 5813032595 \n47 neuprint_JRC_Hemibrain_1point1 5813056598 \n48 neuprint_JRC_Hemibrain_1point1 5813054725 \n49 neuprint_JRC_Hemibrain_1point1 1946178096 \n50 neuprint_JRC_Hemibrain_1point1 5813055277 \n51 neuprint_JRC_Hemibrain_1point1 5813054773 \n52 neuprint_JRC_Hemibrain_1point1 1762354941 \n\n templates dataset \\\n0 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n1 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n2 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n3 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n4 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n5 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n6 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n7 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n8 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n9 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n10 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n11 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n12 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n13 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n14 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n15 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n16 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n17 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n18 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n19 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n20 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n21 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n22 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n23 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n24 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n25 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n26 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n27 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n28 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n29 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n30 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n31 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n32 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n33 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n34 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n35 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n36 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n37 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n38 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n39 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n40 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n41 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n42 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n43 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n44 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n45 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n46 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n47 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n48 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n49 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n50 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n51 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n52 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n\n license \n0 https://creativecommons.org/licenses/by/4.0/le... \n1 https://creativecommons.org/licenses/by/4.0/le... \n2 https://creativecommons.org/licenses/by/4.0/le... \n3 https://creativecommons.org/licenses/by/4.0/le... \n4 https://creativecommons.org/licenses/by/4.0/le... \n5 https://creativecommons.org/licenses/by/4.0/le... \n6 https://creativecommons.org/licenses/by/4.0/le... \n7 https://creativecommons.org/licenses/by/4.0/le... \n8 https://creativecommons.org/licenses/by/4.0/le... \n9 https://creativecommons.org/licenses/by/4.0/le... \n10 https://creativecommons.org/licenses/by/4.0/le... \n11 https://creativecommons.org/licenses/by/4.0/le... \n12 https://creativecommons.org/licenses/by/4.0/le... \n13 https://creativecommons.org/licenses/by/4.0/le... \n14 https://creativecommons.org/licenses/by/4.0/le... \n15 https://creativecommons.org/licenses/by/4.0/le... \n16 https://creativecommons.org/licenses/by/4.0/le... \n17 https://creativecommons.org/licenses/by/4.0/le... \n18 https://creativecommons.org/licenses/by/4.0/le... \n19 https://creativecommons.org/licenses/by/4.0/le... \n20 https://creativecommons.org/licenses/by/4.0/le... \n21 https://creativecommons.org/licenses/by/4.0/le... \n22 https://creativecommons.org/licenses/by/4.0/le... \n23 https://creativecommons.org/licenses/by/4.0/le... \n24 https://creativecommons.org/licenses/by/4.0/le... \n25 https://creativecommons.org/licenses/by/4.0/le... \n26 https://creativecommons.org/licenses/by/4.0/le... \n27 https://creativecommons.org/licenses/by/4.0/le... \n28 https://creativecommons.org/licenses/by/4.0/le... \n29 https://creativecommons.org/licenses/by/4.0/le... \n30 https://creativecommons.org/licenses/by/4.0/le... \n31 https://creativecommons.org/licenses/by/4.0/le... \n32 https://creativecommons.org/licenses/by/4.0/le... \n33 https://creativecommons.org/licenses/by/4.0/le... \n34 https://creativecommons.org/licenses/by/4.0/le... \n35 https://creativecommons.org/licenses/by/4.0/le... \n36 https://creativecommons.org/licenses/by/4.0/le... \n37 https://creativecommons.org/licenses/by/4.0/le... \n38 https://creativecommons.org/licenses/by/4.0/le... \n39 https://creativecommons.org/licenses/by/4.0/le... \n40 https://creativecommons.org/licenses/by/4.0/le... \n41 https://creativecommons.org/licenses/by/4.0/le... \n42 https://creativecommons.org/licenses/by/4.0/le... \n43 https://creativecommons.org/licenses/by/4.0/le... \n44 https://creativecommons.org/licenses/by/4.0/le... \n45 https://creativecommons.org/licenses/by/4.0/le... \n46 https://creativecommons.org/licenses/by/4.0/le... \n47 https://creativecommons.org/licenses/by/4.0/le... \n48 https://creativecommons.org/licenses/by/4.0/le... \n49 https://creativecommons.org/licenses/by/4.0/le... \n50 https://creativecommons.org/licenses/by/4.0/le... \n51 https://creativecommons.org/licenses/by/4.0/le... \n52 https://creativecommons.org/licenses/by/4.0/le... ",
- "text/html": "\n\n
\n \n \n | \n label | \n symbol | \n id | \n tags | \n parents_label | \n parents_id | \n data_source | \n accession | \n templates | \n dataset | \n license | \n
\n \n \n \n 0 | \n lLN16b_R - 1887168462 | \n | \n VFB_jrchk89w | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1887168462 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 1 | \n lLN1_c_R - 5813047691 | \n | \n VFB_jrchk8ae | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813047691 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 2 | \n lLN2S(Star)_R - 1670627928 | \n | \n VFB_jrchk8bb | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 1670627928 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 3 | \n lLN2F_b(Full)_R - 5813024698 | \n | \n VFB_jrchk8an | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2F | \n FBbt_00049812 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813024698 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 4 | \n lLN2T_c(Tortuous)_R - 1671292719 | \n | \n VFB_jrchk8bo | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1671292719 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 5 | \n lLN1_c_R - 5813062199 | \n | \n VFB_jrchk8af | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813062199 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 6 | \n lLN1_a_R - 5813130064 | \n | \n VFB_jrchk8a4 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813130064 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 7 | \n lLN1_c_R - 1702651358 | \n | \n VFB_jrchk8aj | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1702651358 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 8 | \n lLN2T_e(Tortuous)_R - 1640922516 | \n | \n VFB_jrchk8bs | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1640922516 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 9 | \n lLN11_R - 1670278227 | \n | \n VFB_jrchk89e | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1670278227 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 10 | \n lLN2P_c(Patchy)_R - 2105086391 | \n | \n VFB_jrchk8b0 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2P | \n FBbt_00049813 | \n neuprint_JRC_Hemibrain_1point1 | \n 2105086391 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 11 | \n lLN2T_b(Tortuous)_R - 1640572741 | \n | \n VFB_jrchk8bl | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1640572741 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 12 | \n lLN1_c_R - 1578826464 | \n | \n VFB_jrchk8ah | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1578826464 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 13 | \n lLN2P_a(Patchy)_R - 2041621893 | \n | \n VFB_jrchk8ao | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2P | \n FBbt_00049813 | \n neuprint_JRC_Hemibrain_1point1 | \n 2041621893 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 14 | \n lLN2S(Star)_R - 1762359683 | \n | \n VFB_jrchk8bc | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 1762359683 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 15 | \n lLN1_b_R - 5813054622 | \n | \n VFB_jrchk8a8 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813054622 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 16 | \n lLN2F_a(Full)_R - 1670287030 | \n | \n VFB_jrchk8al | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2F | \n FBbt_00049812 | \n neuprint_JRC_Hemibrain_1point1 | \n 1670287030 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 17 | \n lLN12a_R - 1826445251 | \n | \n VFB_jrchk89g | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1826445251 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 18 | \n lLN11_R - 2040301572 | \n | \n VFB_jrchk89d | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 2040301572 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 19 | \n il3LN6_R - 5813018460 | \n | \n VFB_jrchk88v | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813018460 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 20 | \n lLN2R_b(Regional)_R - 5813076969 | \n | \n VFB_jrchk8b6 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2R | \n FBbt_00049814 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813076969 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 21 | \n lLN16a_R - 1702318692 | \n | \n VFB_jrchk89t | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1702318692 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 22 | \n lLN2T_d(Tortuous)_R - 1667251683 | \n | \n VFB_jrchk8bp | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1667251683 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 23 | \n lLN2R_b(Regional)_R - 1702305987 | \n | \n VFB_jrchk8b5 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2R | \n FBbt_00049814 | \n neuprint_JRC_Hemibrain_1point1 | \n 1702305987 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 24 | \n v2LN35_R - 1733056086 | \n | \n VFB_jrchk8ew | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 1733056086 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 25 | \n lLN1_b_R - 1610530558 | \n | \n VFB_jrchk8ac | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1610530558 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 26 | \n lLN2S(Star)_R - 1640922754 | \n | \n VFB_jrchk8b8 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 1640922754 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 27 | \n lLN1_c_R - 1824101645 | \n | \n VFB_jrchk8ag | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1824101645 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 28 | \n lLN1_c_R - 1547454812 | \n | \n VFB_jrchk8ai | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1547454812 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 29 | \n lLN1_b_R - 5813069055 | \n | \n VFB_jrchk8aa | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069055 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 30 | \n lLN1_b_R - 1642623277 | \n | \n VFB_jrchk8ad | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1642623277 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 31 | \n lLN2T_a(Tortuous)_R - 5813054726 | \n | \n VFB_jrchk8bh | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813054726 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 32 | \n lLN2F_b(Full)_R - 1640909284 | \n | \n VFB_jrchk8am | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2F | \n FBbt_00049812 | \n neuprint_JRC_Hemibrain_1point1 | \n 1640909284 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 33 | \n lLN2F_a(Full)_R - 5901218894 | \n | \n VFB_jrchk8ak | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2F | \n FBbt_00049812 | \n neuprint_JRC_Hemibrain_1point1 | \n 5901218894 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 34 | \n lLN2T_e(Tortuous)_R - 1699974843 | \n | \n VFB_jrchk8br | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1699974843 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 35 | \n lLN10_R - 1825789179 | \n | \n VFB_jrchk89b | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1825789179 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 36 | \n lLN2S(Star)_R - 1702306037 | \n | \n VFB_jrchk8b7 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 1702306037 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 37 | \n lLN2S(Star)_R - 1732995501 | \n | \n VFB_jrchk8ba | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 1732995501 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 38 | \n lLN2S(Star)_R - 5813069085 | \n | \n VFB_jrchk8b9 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2S | \n FBbt_00049815 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069085 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 39 | \n v2LN3b_R - 1888199872 | \n | \n VFB_jrchk8fg | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 1888199872 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 40 | \n lLN1_b_R - 1640887603 | \n | \n VFB_jrchk8a6 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 1640887603 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 41 | \n lLN1_b_R - 5813078440 | \n | \n VFB_jrchk8a7 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813078440 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 42 | \n lLN2T_b(Tortuous)_R - 5813034493 | \n | \n VFB_jrchk8bm | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813034493 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 43 | \n lLN1_b_R - 5813054777 | \n | \n VFB_jrchk8a9 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813054777 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 44 | \n v2LN30_R - 1671620613 | \n | \n VFB_jrchk8e8 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 1671620613 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 45 | \n v2LN3b_R - 5813034455 | \n | \n VFB_jrchk8ff | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813034455 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 46 | \n lLN2T_a(Tortuous)_R - 5813032595 | \n | \n VFB_jrchk8bd | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813032595 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 47 | \n lLN2T_a(Tortuous)_R - 5813056598 | \n | \n VFB_jrchk8bi | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813056598 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 48 | \n lLN1_b_R - 5813054725 | \n | \n VFB_jrchk8ab | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult local interneuron of the lateral ALl1 ne... | \n FBbt_00007394 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813054725 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 49 | \n lLN2P_b(Patchy)_R - 1946178096 | \n | \n VFB_jrchk8au | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2P | \n FBbt_00049813 | \n neuprint_JRC_Hemibrain_1point1 | \n 1946178096 | \n JRC2018Unisex|JRC_FlyEM_Hemibrain | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 50 | \n lLN2T_a(Tortuous)_R - 5813055277 | \n | \n VFB_jrchk8bf | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813055277 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 51 | \n l2LN18_R - 5813054773 | \n | \n VFB_jrchk891 | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n local interneuron of adult antennal lobe | \n FBbt_00007390 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813054773 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n 52 | \n lLN2T_a(Tortuous)_R - 1762354941 | \n | \n VFB_jrchk8bg | \n Entity|has_image|Adult|Anatomy|has_neuron_conn... | \n adult antennal lobe lateral local neuron 2T | \n FBbt_00049816 | \n neuprint_JRC_Hemibrain_1point1 | \n 1762354941 | \n JRC_FlyEM_Hemibrain|JRC2018Unisex | \n Xu2020NeuronsV1point1 | \n https://creativecommons.org/licenses/by/4.0/le... | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " label | \n",
+ " symbol | \n",
+ " id | \n",
+ " tags | \n",
+ " parents_label | \n",
+ " parents_id | \n",
+ " data_source | \n",
+ " accession | \n",
+ " templates | \n",
+ " dataset | \n",
+ " license | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " v2LN35_R (FlyEM-HB:1733056086) | \n",
+ " 1733056086 | \n",
+ " VFB_jrchk8ew | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron v2LN35 | \n",
+ " FBbt_20003766 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1733056086 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) | \n",
+ " 5813032595 | \n",
+ " VFB_jrchk8bd | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813032595 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 2 | \n",
+ " lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683) | \n",
+ " 1667251683 | \n",
+ " VFB_jrchk8bp | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1667251683 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 3 | \n",
+ " lLN2P_b(Patchy)_R (FlyEM-HB:1946178096) | \n",
+ " 1946178096 | \n",
+ " VFB_jrchk8au | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2P | \n",
+ " FBbt_00049813 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1946178096 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 4 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941) | \n",
+ " 1762354941 | \n",
+ " VFB_jrchk8bg | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1762354941 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 5 | \n",
+ " lLN1_c_R (FlyEM-HB:1547454812) | \n",
+ " 1547454812 | \n",
+ " VFB_jrchk8ai | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1547454812 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 6 | \n",
+ " lLN1_b_R (FlyEM-HB:5813054622) | \n",
+ " 5813054622 | \n",
+ " VFB_jrchk8a8 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813054622 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 7 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598) | \n",
+ " 5813056598 | \n",
+ " VFB_jrchk8bi | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813056598 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 8 | \n",
+ " lLN16b_R (FlyEM-HB:1887168462) | \n",
+ " 1887168462 | \n",
+ " VFB_jrchk89w | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN16B | \n",
+ " FBbt_20003752 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1887168462 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 9 | \n",
+ " lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516) | \n",
+ " 1640922516 | \n",
+ " VFB_jrchk8bs | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1640922516 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 10 | \n",
+ " lLN1_b_R (FlyEM-HB:1642623277) | \n",
+ " 1642623277 | \n",
+ " VFB_jrchk8ad | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1642623277 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 11 | \n",
+ " lLN1_c_R (FlyEM-HB:1702651358) | \n",
+ " 1702651358 | \n",
+ " VFB_jrchk8aj | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1702651358 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 12 | \n",
+ " lLN2F_a(Full)_R (FlyEM-HB:1670287030) | \n",
+ " 1670287030 | \n",
+ " VFB_jrchk8al | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2F | \n",
+ " FBbt_00049812 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1670287030 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 13 | \n",
+ " lLN1_a_R (FlyEM-HB:5813130064) | \n",
+ " 5813130064 | \n",
+ " VFB_jrchk8a4 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813130064 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 14 | \n",
+ " lLN1_b_R (FlyEM-HB:5813069055) | \n",
+ " 5813069055 | \n",
+ " VFB_jrchk8aa | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813069055 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 15 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:1762359683) | \n",
+ " 1762359683 | \n",
+ " VFB_jrchk8bc | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1762359683 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 16 | \n",
+ " lLN1_c_R (FlyEM-HB:1578826464) | \n",
+ " 1578826464 | \n",
+ " VFB_jrchk8ah | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1578826464 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 17 | \n",
+ " lLN2F_b(Full)_R (FlyEM-HB:5813024698) | \n",
+ " 5813024698 | \n",
+ " VFB_jrchk8an | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2F | \n",
+ " FBbt_00049812 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813024698 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 18 | \n",
+ " lLN2R_b(Regional)_R (FlyEM-HB:5813076969) | \n",
+ " 5813076969 | \n",
+ " VFB_jrchk8b6 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2R | \n",
+ " FBbt_00049814 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813076969 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 19 | \n",
+ " lLN1_b_R (FlyEM-HB:5813054777) | \n",
+ " 5813054777 | \n",
+ " VFB_jrchk8a9 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813054777 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 20 | \n",
+ " lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741) | \n",
+ " 1640572741 | \n",
+ " VFB_jrchk8bl | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1640572741 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 21 | \n",
+ " lLN1_c_R (FlyEM-HB:5813062199) | \n",
+ " 5813062199 | \n",
+ " VFB_jrchk8af | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813062199 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 22 | \n",
+ " lLN16a_R (FlyEM-HB:1702318692) | \n",
+ " 1702318692 | \n",
+ " VFB_jrchk89t | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN16A | \n",
+ " FBbt_20003751 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1702318692 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 23 | \n",
+ " lLN12a_R (FlyEM-HB:1826445251) | \n",
+ " 1826445251 | \n",
+ " VFB_jrchk89g | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN12A | \n",
+ " FBbt_20003746 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1826445251 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 24 | \n",
+ " lLN1_c_R (FlyEM-HB:5813047691) | \n",
+ " 5813047691 | \n",
+ " VFB_jrchk8ae | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813047691 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 25 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726) | \n",
+ " 5813054726 | \n",
+ " VFB_jrchk8bh | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813054726 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 26 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:1670627928) | \n",
+ " 1670627928 | \n",
+ " VFB_jrchk8bb | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1670627928 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 27 | \n",
+ " lLN1_b_R (FlyEM-HB:5813078440) | \n",
+ " 5813078440 | \n",
+ " VFB_jrchk8a7 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813078440 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 28 | \n",
+ " lLN2R_b(Regional)_R (FlyEM-HB:1702305987) | \n",
+ " 1702305987 | \n",
+ " VFB_jrchk8b5 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2R | \n",
+ " FBbt_00049814 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1702305987 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 29 | \n",
+ " lLN1_b_R (FlyEM-HB:5813054725) | \n",
+ " 5813054725 | \n",
+ " VFB_jrchk8ab | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813054725 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 30 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:1732995501) | \n",
+ " 1732995501 | \n",
+ " VFB_jrchk8ba | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1732995501 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 31 | \n",
+ " lLN1_b_R (FlyEM-HB:1640887603) | \n",
+ " 1640887603 | \n",
+ " VFB_jrchk8a6 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1640887603 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 32 | \n",
+ " lLN2P_a(Patchy)_R (FlyEM-HB:2041621893) | \n",
+ " 2041621893 | \n",
+ " VFB_jrchk8ao | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2P | \n",
+ " FBbt_00049813 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 2041621893 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 33 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:1702306037) | \n",
+ " 1702306037 | \n",
+ " VFB_jrchk8b7 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1702306037 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 34 | \n",
+ " v2LN30_R (FlyEM-HB:1671620613) | \n",
+ " 1671620613 | \n",
+ " VFB_jrchk8e8 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron v2LN30 | \n",
+ " FBbt_20003756 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1671620613 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 35 | \n",
+ " lLN11_R (FlyEM-HB:2040301572) | \n",
+ " 2040301572 | \n",
+ " VFB_jrchk89d | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN11 | \n",
+ " FBbt_20003745 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 2040301572 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 36 | \n",
+ " lLN1_c_R (FlyEM-HB:1824101645) | \n",
+ " 1824101645 | \n",
+ " VFB_jrchk8ag | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1824101645 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 37 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:1640922754) | \n",
+ " 1640922754 | \n",
+ " VFB_jrchk8b8 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1640922754 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 38 | \n",
+ " lLN2S(Star)_R (FlyEM-HB:5813069085) | \n",
+ " 5813069085 | \n",
+ " VFB_jrchk8b9 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2S | \n",
+ " FBbt_00049815 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813069085 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 39 | \n",
+ " lLN2P_c(Patchy)_R (FlyEM-HB:2105086391) | \n",
+ " 2105086391 | \n",
+ " VFB_jrchk8b0 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2P | \n",
+ " FBbt_00049813 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 2105086391 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 40 | \n",
+ " lLN1_b_R (FlyEM-HB:1610530558) | \n",
+ " 1610530558 | \n",
+ " VFB_jrchk8ac | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN1 | \n",
+ " FBbt_00007395 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1610530558 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 41 | \n",
+ " lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843) | \n",
+ " 1699974843 | \n",
+ " VFB_jrchk8br | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1699974843 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 42 | \n",
+ " lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277) | \n",
+ " 5813055277 | \n",
+ " VFB_jrchk8bf | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813055277 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 43 | \n",
+ " lLN2F_a(Full)_R (FlyEM-HB:5901218894) | \n",
+ " 5901218894 | \n",
+ " VFB_jrchk8ak | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2F | \n",
+ " FBbt_00049812 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5901218894 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 44 | \n",
+ " il3LN6_R (FlyEM-HB:5813018460) | \n",
+ " 5813018460 | \n",
+ " VFB_jrchk88v | \n",
+ " Entity|Adult|Anatomy|Cell|GABAergic|Individual... | \n",
+ " antennal lobe local neuron 6 | \n",
+ " FBbt_00047710 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813018460 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 45 | \n",
+ " lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719) | \n",
+ " 1671292719 | \n",
+ " VFB_jrchk8bo | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1671292719 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 46 | \n",
+ " lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493) | \n",
+ " 5813034493 | \n",
+ " VFB_jrchk8bm | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2T | \n",
+ " FBbt_00049816 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813034493 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 47 | \n",
+ " l2LN18_R (FlyEM-HB:5813054773) | \n",
+ " 5813054773 | \n",
+ " VFB_jrchk891 | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron l2LN18 | \n",
+ " FBbt_20003734 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813054773 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 48 | \n",
+ " lLN10_R (FlyEM-HB:1825789179) | \n",
+ " 1825789179 | \n",
+ " VFB_jrchk89b | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN10 | \n",
+ " FBbt_20003744 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1825789179 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 49 | \n",
+ " v2LN3b_R (FlyEM-HB:1888199872) | \n",
+ " 1888199872 | \n",
+ " VFB_jrchk8fg | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron v2LN3B | \n",
+ " FBbt_20003755 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1888199872 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 50 | \n",
+ " v2LN3b_R (FlyEM-HB:5813034455) | \n",
+ " 5813034455 | \n",
+ " VFB_jrchk8ff | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron v2LN3B | \n",
+ " FBbt_20003755 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 5813034455 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 51 | \n",
+ " lLN2F_b(Full)_R (FlyEM-HB:1640909284) | \n",
+ " 1640909284 | \n",
+ " VFB_jrchk8am | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN2F | \n",
+ " FBbt_00049812 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1640909284 | \n",
+ " JRC_FlyEM_Hemibrain|JRC2018Unisex | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ " 52 | \n",
+ " lLN11_R (FlyEM-HB:1670278227) | \n",
+ " 1670278227 | \n",
+ " VFB_jrchk89e | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " adult antennal lobe local neuron lLN11 | \n",
+ " FBbt_20003745 | \n",
+ " neuprint_JRC_Hemibrain_1point1 | \n",
+ " 1670278227 | \n",
+ " JRC2018Unisex|JRC_FlyEM_Hemibrain | \n",
+ " Xu2020NeuronsV1point1 | \n",
+ " https://creativecommons.org/licenses/by/4.0/le... | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " label symbol id \\\n",
+ "0 v2LN35_R (FlyEM-HB:1733056086) 1733056086 VFB_jrchk8ew \n",
+ "1 lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) 5813032595 VFB_jrchk8bd \n",
+ "2 lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683) 1667251683 VFB_jrchk8bp \n",
+ "3 lLN2P_b(Patchy)_R (FlyEM-HB:1946178096) 1946178096 VFB_jrchk8au \n",
+ "4 lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941) 1762354941 VFB_jrchk8bg \n",
+ "5 lLN1_c_R (FlyEM-HB:1547454812) 1547454812 VFB_jrchk8ai \n",
+ "6 lLN1_b_R (FlyEM-HB:5813054622) 5813054622 VFB_jrchk8a8 \n",
+ "7 lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598) 5813056598 VFB_jrchk8bi \n",
+ "8 lLN16b_R (FlyEM-HB:1887168462) 1887168462 VFB_jrchk89w \n",
+ "9 lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516) 1640922516 VFB_jrchk8bs \n",
+ "10 lLN1_b_R (FlyEM-HB:1642623277) 1642623277 VFB_jrchk8ad \n",
+ "11 lLN1_c_R (FlyEM-HB:1702651358) 1702651358 VFB_jrchk8aj \n",
+ "12 lLN2F_a(Full)_R (FlyEM-HB:1670287030) 1670287030 VFB_jrchk8al \n",
+ "13 lLN1_a_R (FlyEM-HB:5813130064) 5813130064 VFB_jrchk8a4 \n",
+ "14 lLN1_b_R (FlyEM-HB:5813069055) 5813069055 VFB_jrchk8aa \n",
+ "15 lLN2S(Star)_R (FlyEM-HB:1762359683) 1762359683 VFB_jrchk8bc \n",
+ "16 lLN1_c_R (FlyEM-HB:1578826464) 1578826464 VFB_jrchk8ah \n",
+ "17 lLN2F_b(Full)_R (FlyEM-HB:5813024698) 5813024698 VFB_jrchk8an \n",
+ "18 lLN2R_b(Regional)_R (FlyEM-HB:5813076969) 5813076969 VFB_jrchk8b6 \n",
+ "19 lLN1_b_R (FlyEM-HB:5813054777) 5813054777 VFB_jrchk8a9 \n",
+ "20 lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741) 1640572741 VFB_jrchk8bl \n",
+ "21 lLN1_c_R (FlyEM-HB:5813062199) 5813062199 VFB_jrchk8af \n",
+ "22 lLN16a_R (FlyEM-HB:1702318692) 1702318692 VFB_jrchk89t \n",
+ "23 lLN12a_R (FlyEM-HB:1826445251) 1826445251 VFB_jrchk89g \n",
+ "24 lLN1_c_R (FlyEM-HB:5813047691) 5813047691 VFB_jrchk8ae \n",
+ "25 lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726) 5813054726 VFB_jrchk8bh \n",
+ "26 lLN2S(Star)_R (FlyEM-HB:1670627928) 1670627928 VFB_jrchk8bb \n",
+ "27 lLN1_b_R (FlyEM-HB:5813078440) 5813078440 VFB_jrchk8a7 \n",
+ "28 lLN2R_b(Regional)_R (FlyEM-HB:1702305987) 1702305987 VFB_jrchk8b5 \n",
+ "29 lLN1_b_R (FlyEM-HB:5813054725) 5813054725 VFB_jrchk8ab \n",
+ "30 lLN2S(Star)_R (FlyEM-HB:1732995501) 1732995501 VFB_jrchk8ba \n",
+ "31 lLN1_b_R (FlyEM-HB:1640887603) 1640887603 VFB_jrchk8a6 \n",
+ "32 lLN2P_a(Patchy)_R (FlyEM-HB:2041621893) 2041621893 VFB_jrchk8ao \n",
+ "33 lLN2S(Star)_R (FlyEM-HB:1702306037) 1702306037 VFB_jrchk8b7 \n",
+ "34 v2LN30_R (FlyEM-HB:1671620613) 1671620613 VFB_jrchk8e8 \n",
+ "35 lLN11_R (FlyEM-HB:2040301572) 2040301572 VFB_jrchk89d \n",
+ "36 lLN1_c_R (FlyEM-HB:1824101645) 1824101645 VFB_jrchk8ag \n",
+ "37 lLN2S(Star)_R (FlyEM-HB:1640922754) 1640922754 VFB_jrchk8b8 \n",
+ "38 lLN2S(Star)_R (FlyEM-HB:5813069085) 5813069085 VFB_jrchk8b9 \n",
+ "39 lLN2P_c(Patchy)_R (FlyEM-HB:2105086391) 2105086391 VFB_jrchk8b0 \n",
+ "40 lLN1_b_R (FlyEM-HB:1610530558) 1610530558 VFB_jrchk8ac \n",
+ "41 lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843) 1699974843 VFB_jrchk8br \n",
+ "42 lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277) 5813055277 VFB_jrchk8bf \n",
+ "43 lLN2F_a(Full)_R (FlyEM-HB:5901218894) 5901218894 VFB_jrchk8ak \n",
+ "44 il3LN6_R (FlyEM-HB:5813018460) 5813018460 VFB_jrchk88v \n",
+ "45 lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719) 1671292719 VFB_jrchk8bo \n",
+ "46 lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493) 5813034493 VFB_jrchk8bm \n",
+ "47 l2LN18_R (FlyEM-HB:5813054773) 5813054773 VFB_jrchk891 \n",
+ "48 lLN10_R (FlyEM-HB:1825789179) 1825789179 VFB_jrchk89b \n",
+ "49 v2LN3b_R (FlyEM-HB:1888199872) 1888199872 VFB_jrchk8fg \n",
+ "50 v2LN3b_R (FlyEM-HB:5813034455) 5813034455 VFB_jrchk8ff \n",
+ "51 lLN2F_b(Full)_R (FlyEM-HB:1640909284) 1640909284 VFB_jrchk8am \n",
+ "52 lLN11_R (FlyEM-HB:1670278227) 1670278227 VFB_jrchk89e \n",
+ "\n",
+ " tags \\\n",
+ "0 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "1 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "2 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "3 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "4 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "5 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "6 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "7 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "8 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "9 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "10 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "11 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "12 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "13 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "14 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "15 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "16 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "17 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "18 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "19 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "20 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "21 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "22 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "23 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "24 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "25 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "26 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "27 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "28 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "29 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "30 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "31 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "32 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "33 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "34 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "35 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "36 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "37 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "38 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "39 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "40 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "41 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "42 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "43 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "44 Entity|Adult|Anatomy|Cell|GABAergic|Individual... \n",
+ "45 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "46 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "47 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "48 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "49 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "50 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "51 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "52 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "\n",
+ " parents_label parents_id \\\n",
+ "0 adult antennal lobe local neuron v2LN35 FBbt_20003766 \n",
+ "1 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "2 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "3 adult antennal lobe local neuron lLN2P FBbt_00049813 \n",
+ "4 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "5 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "6 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "7 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "8 adult antennal lobe local neuron lLN16B FBbt_20003752 \n",
+ "9 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "10 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "11 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "12 adult antennal lobe local neuron lLN2F FBbt_00049812 \n",
+ "13 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "14 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "15 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "16 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "17 adult antennal lobe local neuron lLN2F FBbt_00049812 \n",
+ "18 adult antennal lobe local neuron lLN2R FBbt_00049814 \n",
+ "19 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "20 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "21 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "22 adult antennal lobe local neuron lLN16A FBbt_20003751 \n",
+ "23 adult antennal lobe local neuron lLN12A FBbt_20003746 \n",
+ "24 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "25 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "26 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "27 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "28 adult antennal lobe local neuron lLN2R FBbt_00049814 \n",
+ "29 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "30 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "31 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "32 adult antennal lobe local neuron lLN2P FBbt_00049813 \n",
+ "33 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "34 adult antennal lobe local neuron v2LN30 FBbt_20003756 \n",
+ "35 adult antennal lobe local neuron lLN11 FBbt_20003745 \n",
+ "36 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "37 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "38 adult antennal lobe local neuron lLN2S FBbt_00049815 \n",
+ "39 adult antennal lobe local neuron lLN2P FBbt_00049813 \n",
+ "40 adult antennal lobe local neuron lLN1 FBbt_00007395 \n",
+ "41 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "42 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "43 adult antennal lobe local neuron lLN2F FBbt_00049812 \n",
+ "44 antennal lobe local neuron 6 FBbt_00047710 \n",
+ "45 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "46 adult antennal lobe local neuron lLN2T FBbt_00049816 \n",
+ "47 adult antennal lobe local neuron l2LN18 FBbt_20003734 \n",
+ "48 adult antennal lobe local neuron lLN10 FBbt_20003744 \n",
+ "49 adult antennal lobe local neuron v2LN3B FBbt_20003755 \n",
+ "50 adult antennal lobe local neuron v2LN3B FBbt_20003755 \n",
+ "51 adult antennal lobe local neuron lLN2F FBbt_00049812 \n",
+ "52 adult antennal lobe local neuron lLN11 FBbt_20003745 \n",
+ "\n",
+ " data_source accession \\\n",
+ "0 neuprint_JRC_Hemibrain_1point1 1733056086 \n",
+ "1 neuprint_JRC_Hemibrain_1point1 5813032595 \n",
+ "2 neuprint_JRC_Hemibrain_1point1 1667251683 \n",
+ "3 neuprint_JRC_Hemibrain_1point1 1946178096 \n",
+ "4 neuprint_JRC_Hemibrain_1point1 1762354941 \n",
+ "5 neuprint_JRC_Hemibrain_1point1 1547454812 \n",
+ "6 neuprint_JRC_Hemibrain_1point1 5813054622 \n",
+ "7 neuprint_JRC_Hemibrain_1point1 5813056598 \n",
+ "8 neuprint_JRC_Hemibrain_1point1 1887168462 \n",
+ "9 neuprint_JRC_Hemibrain_1point1 1640922516 \n",
+ "10 neuprint_JRC_Hemibrain_1point1 1642623277 \n",
+ "11 neuprint_JRC_Hemibrain_1point1 1702651358 \n",
+ "12 neuprint_JRC_Hemibrain_1point1 1670287030 \n",
+ "13 neuprint_JRC_Hemibrain_1point1 5813130064 \n",
+ "14 neuprint_JRC_Hemibrain_1point1 5813069055 \n",
+ "15 neuprint_JRC_Hemibrain_1point1 1762359683 \n",
+ "16 neuprint_JRC_Hemibrain_1point1 1578826464 \n",
+ "17 neuprint_JRC_Hemibrain_1point1 5813024698 \n",
+ "18 neuprint_JRC_Hemibrain_1point1 5813076969 \n",
+ "19 neuprint_JRC_Hemibrain_1point1 5813054777 \n",
+ "20 neuprint_JRC_Hemibrain_1point1 1640572741 \n",
+ "21 neuprint_JRC_Hemibrain_1point1 5813062199 \n",
+ "22 neuprint_JRC_Hemibrain_1point1 1702318692 \n",
+ "23 neuprint_JRC_Hemibrain_1point1 1826445251 \n",
+ "24 neuprint_JRC_Hemibrain_1point1 5813047691 \n",
+ "25 neuprint_JRC_Hemibrain_1point1 5813054726 \n",
+ "26 neuprint_JRC_Hemibrain_1point1 1670627928 \n",
+ "27 neuprint_JRC_Hemibrain_1point1 5813078440 \n",
+ "28 neuprint_JRC_Hemibrain_1point1 1702305987 \n",
+ "29 neuprint_JRC_Hemibrain_1point1 5813054725 \n",
+ "30 neuprint_JRC_Hemibrain_1point1 1732995501 \n",
+ "31 neuprint_JRC_Hemibrain_1point1 1640887603 \n",
+ "32 neuprint_JRC_Hemibrain_1point1 2041621893 \n",
+ "33 neuprint_JRC_Hemibrain_1point1 1702306037 \n",
+ "34 neuprint_JRC_Hemibrain_1point1 1671620613 \n",
+ "35 neuprint_JRC_Hemibrain_1point1 2040301572 \n",
+ "36 neuprint_JRC_Hemibrain_1point1 1824101645 \n",
+ "37 neuprint_JRC_Hemibrain_1point1 1640922754 \n",
+ "38 neuprint_JRC_Hemibrain_1point1 5813069085 \n",
+ "39 neuprint_JRC_Hemibrain_1point1 2105086391 \n",
+ "40 neuprint_JRC_Hemibrain_1point1 1610530558 \n",
+ "41 neuprint_JRC_Hemibrain_1point1 1699974843 \n",
+ "42 neuprint_JRC_Hemibrain_1point1 5813055277 \n",
+ "43 neuprint_JRC_Hemibrain_1point1 5901218894 \n",
+ "44 neuprint_JRC_Hemibrain_1point1 5813018460 \n",
+ "45 neuprint_JRC_Hemibrain_1point1 1671292719 \n",
+ "46 neuprint_JRC_Hemibrain_1point1 5813034493 \n",
+ "47 neuprint_JRC_Hemibrain_1point1 5813054773 \n",
+ "48 neuprint_JRC_Hemibrain_1point1 1825789179 \n",
+ "49 neuprint_JRC_Hemibrain_1point1 1888199872 \n",
+ "50 neuprint_JRC_Hemibrain_1point1 5813034455 \n",
+ "51 neuprint_JRC_Hemibrain_1point1 1640909284 \n",
+ "52 neuprint_JRC_Hemibrain_1point1 1670278227 \n",
+ "\n",
+ " templates dataset \\\n",
+ "0 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "1 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "2 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "3 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "4 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "5 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "6 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "7 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "8 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "9 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "10 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "11 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "12 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "13 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "14 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "15 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "16 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "17 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "18 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "19 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "20 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "21 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "22 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "23 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "24 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "25 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "26 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "27 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "28 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "29 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "30 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "31 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "32 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "33 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "34 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "35 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "36 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "37 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "38 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "39 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "40 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "41 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "42 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "43 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "44 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "45 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "46 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "47 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "48 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "49 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "50 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "51 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 \n",
+ "52 JRC2018Unisex|JRC_FlyEM_Hemibrain Xu2020NeuronsV1point1 \n",
+ "\n",
+ " license \n",
+ "0 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "1 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "2 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "3 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "4 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "5 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "6 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "7 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "8 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "9 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "10 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "11 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "12 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "13 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "14 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "15 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "16 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "17 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "18 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "19 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "20 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "21 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "22 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "23 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "24 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "25 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "26 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "27 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "28 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "29 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "30 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "31 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "32 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "33 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "34 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "35 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "36 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "37 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "38 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "39 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "40 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "41 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "42 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "43 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "44 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "45 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "46 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "47 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "48 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "49 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "50 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "51 https://creativecommons.org/licenses/by/4.0/le... \n",
+ "52 https://creativecommons.org/licenses/by/4.0/le... "
+ ]
},
- "metadata": {}
+ "execution_count": 5,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "# Find local interneurons (intrinsic neurons) of the AL, overlapping DA3:\n",
+ "\n",
+ "local_in_DA3 = vc.get_instances(\"'local interneuron of adult antennal lobe' that 'overlaps' some 'antennal lobe glomerulus DA3'\",\n",
+ " summary=True)\n",
+ "local_in_DA3_tab = pd.DataFrame.from_records(local_in_DA3)\n",
+ "local_in_DA3_tab"
]
},
{
"cell_type": "code",
+ "execution_count": 6,
"metadata": {
- "tags": [],
"cell_id": "00004-91e5a8af-2f48-4ebb-9c9a-765a7d80a5f1",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "e41b421a",
"execution_millis": 1293,
- "output_cleared": false,
"execution_start": 1614738285746,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "e41b421a",
+ "tags": []
},
- "source": [
- "# Find neurons by dataset/paper - on CATMAID\n",
- "\n",
- "bates = pymaid.find_neurons(annotations='Paper: Bates and Schlegel et al 2020')\n",
- "bates"
- ],
- "execution_count": null,
"outputs": [
{
"name": "stderr",
- "text": "INFO : Found 583 neurons matching the search parameters (pymaid)\n",
- "output_type": "stream"
+ "output_type": "stream",
+ "text": [
+ "INFO : Found 584 neurons matching the search parameters (pymaid)\n"
+ ]
},
{
- "output_type": "execute_result",
- "execution_count": 6,
"data": {
- "text/plain": " containing 583 neurons (0.0B)\n type name \\\n0 CatmaidNeuron Uniglomerular mALT DA1 lPN 57316 2863105 ML \n1 CatmaidNeuron Uniglomerular mALT DA3 adPN 57350 HG \n.. ... ... \n581 CatmaidNeuron Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ... \n582 CatmaidNeuron Uniglomerular mALT DL2d adPN 57342 ML \n\n skeleton_id n_nodes n_connectors n_branches n_leafs cable_length soma \\\n0 2863104 NA NA NA NA NA NA \n1 57349 NA NA NA NA NA NA \n.. ... ... ... ... ... ... ... \n581 4624378 NA NA NA NA NA NA \n582 57341 NA NA NA NA NA NA \n\n units \n0 1 nanometer \n1 1 nanometer \n.. ... \n581 1 nanometer \n582 1 nanometer ",
- "text/html": "<class 'pymaid.core.CatmaidNeuronList'> containing 583 neurons (0.0B)\n\n
\n \n \n | \n type | \n name | \n skeleton_id | \n n_nodes | \n n_connectors | \n n_branches | \n n_leafs | \n cable_length | \n soma | \n units | \n
\n \n \n \n 0 | \n CatmaidNeuron | \n Uniglomerular mALT DA1 lPN 57316 2863105 ML | \n 2863104 | \n NA | \n NA | \n NA | \n NA | \n NA | \n NA | \n 1 nanometer | \n
\n \n 1 | \n CatmaidNeuron | \n Uniglomerular mALT DA3 adPN 57350 HG | \n 57349 | \n NA | \n NA | \n NA | \n NA | \n NA | \n NA | \n 1 nanometer | \n
\n \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n
\n \n 581 | \n CatmaidNeuron | \n Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ... | \n 4624378 | \n NA | \n NA | \n NA | \n NA | \n NA | \n NA | \n 1 nanometer | \n
\n \n 582 | \n CatmaidNeuron | \n Uniglomerular mALT DL2d adPN 57342 ML | \n 57341 | \n NA | \n NA | \n NA | \n NA | \n NA | \n NA | \n 1 nanometer | \n
\n \n
\n
"
+ "text/html": [
+ "<class 'pymaid.core.CatmaidNeuronList'> containing 584 neurons (0.0B)\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " type | \n",
+ " name | \n",
+ " skeleton_id | \n",
+ " n_nodes | \n",
+ " n_connectors | \n",
+ " n_branches | \n",
+ " n_leafs | \n",
+ " cable_length | \n",
+ " soma | \n",
+ " units | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " CatmaidNeuron | \n",
+ " Uniglomerular mALT DA1 lPN 57316 2863105 ML | \n",
+ " 2863104 | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " 1 nanometer | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " CatmaidNeuron | \n",
+ " Uniglomerular mALT DA3 adPN 57350 HG | \n",
+ " 57349 | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " 1 nanometer | \n",
+ "
\n",
+ " \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ "
\n",
+ " \n",
+ " 582 | \n",
+ " CatmaidNeuron | \n",
+ " Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ... | \n",
+ " 4624378 | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " 1 nanometer | \n",
+ "
\n",
+ " \n",
+ " 583 | \n",
+ " CatmaidNeuron | \n",
+ " Uniglomerular mALT DL2d adPN 57342 ML | \n",
+ " 57341 | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " NA | \n",
+ " 1 nanometer | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " containing 584 neurons (0.0B)\n",
+ " type name \\\n",
+ "0 CatmaidNeuron Uniglomerular mALT DA1 lPN 57316 2863105 ML \n",
+ "1 CatmaidNeuron Uniglomerular mALT DA3 adPN 57350 HG \n",
+ ".. ... ... \n",
+ "582 CatmaidNeuron Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ... \n",
+ "583 CatmaidNeuron Uniglomerular mALT DL2d adPN 57342 ML \n",
+ "\n",
+ " skeleton_id n_nodes n_connectors n_branches n_leafs cable_length soma \\\n",
+ "0 2863104 NA NA NA NA NA NA \n",
+ "1 57349 NA NA NA NA NA NA \n",
+ ".. ... ... ... ... ... ... ... \n",
+ "582 4624378 NA NA NA NA NA NA \n",
+ "583 57341 NA NA NA NA NA NA \n",
+ "\n",
+ " units \n",
+ "0 1 nanometer \n",
+ "1 1 nanometer \n",
+ ".. ... \n",
+ "582 1 nanometer \n",
+ "583 1 nanometer "
+ ]
},
- "metadata": {}
+ "execution_count": 6,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "# Find neurons by dataset/paper - on CATMAID\n",
+ "\n",
+ "bates = pymaid.find_neurons(annotations='Paper: Bates and Schlegel et al 2020')\n",
+ "bates"
]
},
{
"cell_type": "code",
+ "execution_count": 7,
"metadata": {
- "tags": [],
"cell_id": "00009-51e5ef7d-4810-4d2d-afce-eb3c6e315810",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "46eeef09",
"execution_millis": 2081,
- "output_cleared": false,
"execution_start": 1614738287044,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "46eeef09",
+ "tags": []
},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " label | \n",
+ " symbol | \n",
+ " id | \n",
+ " tags | \n",
+ " description | \n",
+ " miniref | \n",
+ " FlyBase | \n",
+ " PMID | \n",
+ " DOI | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 67 | \n",
+ " EM L1 Andrade et al. 2019 | \n",
+ " | \n",
+ " Andrade2019 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [L1 EM reconstructed neurons from Andrade et a... | \n",
+ " Andrade et al., 2019, Curr. Biol. 29(3): 412--... | \n",
+ " FBrf0241389 | \n",
+ " 30661802 | \n",
+ " 10.1016/j.cub.2018.12.012 | \n",
+ "
\n",
+ " \n",
+ " 29 | \n",
+ " MBONs and split-GAL4 lines that target them (A... | \n",
+ " | \n",
+ " Aso2014 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [] | \n",
+ " Aso et al., 2014, eLife 3: e04577 | \n",
+ " FBrf0227179 | \n",
+ " 25535793 | \n",
+ " 10.7554/eLife.04577 | \n",
+ "
\n",
+ " \n",
+ " 64 | \n",
+ " split-GAL4 lines for dopaminergic neurons (Aso... | \n",
+ " | \n",
+ " AsoRubin2016 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [For comparison of the properties of memories ... | \n",
+ " Aso and Rubin, 2016, eLife 5: e16135 | \n",
+ " FBrf0233230 | \n",
+ " 27441388 | \n",
+ " 10.7554/eLife.16135 | \n",
+ "
\n",
+ " \n",
+ " 144 | \n",
+ " EM FAFB Baltruschat et al 2021 | \n",
+ " | \n",
+ " Baltruschat2021 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [FAFB EM reconstructed neurons from Baltruscha... | \n",
+ " Baltruschat et al., 2021, Cell Rep. 34(11): 10... | \n",
+ " FBrf0248487 | \n",
+ " 33730583 | \n",
+ " 10.1016/j.celrep.2021.108871 | \n",
+ "
\n",
+ " \n",
+ " 28 | \n",
+ " EM L1 Barnes et al., 2022 | \n",
+ " | \n",
+ " Barnes2022 | \n",
+ " Entity|DataSet|Individual|L1EM | \n",
+ " [L1 EM reconstructed neurons from Barnes et al... | \n",
+ " Barnes et al., 2022, PLoS ONE 17(4): e0266064 | \n",
+ " FBrf0253082 | \n",
+ " 35377898 | \n",
+ " 10.1371/journal.pone.0266064 | \n",
+ "
\n",
+ " \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ "
\n",
+ " \n",
+ " 88 | \n",
+ " EM L1 Zarin, Mark et al. 2019 | \n",
+ " | \n",
+ " Zarin2019 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [L1 EM reconstructed neurons from Zarin, Mark ... | \n",
+ " Zarin, Mark et al., 2019 | \n",
+ " | \n",
+ " | \n",
+ " 10.1101/617977 | \n",
+ "
\n",
+ " \n",
+ " 86 | \n",
+ " EM FAFB Zhao et al., 2023 | \n",
+ " | \n",
+ " Zhao2023 | \n",
+ " Entity|DataSet|Individual|FAFB | \n",
+ " [FAFB EM reconstructed neurons from Zhao et al... | \n",
+ " | \n",
+ " | \n",
+ " | \n",
+ " | \n",
+ "
\n",
+ " \n",
+ " 43 | \n",
+ " EM FAFB Zheng et al 2018 | \n",
+ " | \n",
+ " Zheng2018 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [FAFB EM reconstructed neurons from Zheng et a... | \n",
+ " Zheng et al., 2018, Cell 174(3): 730--743.e22 | \n",
+ " FBrf0239557 | \n",
+ " 30033368 | \n",
+ " 10.1016/j.cell.2018.06.019 | \n",
+ "
\n",
+ " \n",
+ " 44 | \n",
+ " EM FAFB Zheng et al 2020 (published 2022) | \n",
+ " | \n",
+ " Zheng2020 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [FAFB EM reconstructed neurons from Zheng et a... | \n",
+ " Zheng et al., 2022, Curr. Biol. 32(15): 3334--... | \n",
+ " FBrf0254218 | \n",
+ " 35797998 | \n",
+ " 10.1016/j.cub.2022.06.031 | \n",
+ "
\n",
+ " \n",
+ " 74 | \n",
+ " Larval motor circuit neurons (Zwart2016) | \n",
+ " | \n",
+ " Zwart2016 | \n",
+ " Entity|DataSet|Individual|has_image | \n",
+ " [Zwart et al. 2016] | \n",
+ " Zwart et al., 2016, Neuron 91(3): 615--628 | \n",
+ " FBrf0233076 | \n",
+ " 27427461 | \n",
+ " 10.1016/j.neuron.2016.06.031 | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
145 rows × 9 columns
\n",
+ "
"
+ ],
+ "text/plain": [
+ " label symbol \\\n",
+ "67 EM L1 Andrade et al. 2019 \n",
+ "29 MBONs and split-GAL4 lines that target them (A... \n",
+ "64 split-GAL4 lines for dopaminergic neurons (Aso... \n",
+ "144 EM FAFB Baltruschat et al 2021 \n",
+ "28 EM L1 Barnes et al., 2022 \n",
+ ".. ... ... \n",
+ "88 EM L1 Zarin, Mark et al. 2019 \n",
+ "86 EM FAFB Zhao et al., 2023 \n",
+ "43 EM FAFB Zheng et al 2018 \n",
+ "44 EM FAFB Zheng et al 2020 (published 2022) \n",
+ "74 Larval motor circuit neurons (Zwart2016) \n",
+ "\n",
+ " id tags \\\n",
+ "67 Andrade2019 Entity|DataSet|Individual|has_image \n",
+ "29 Aso2014 Entity|DataSet|Individual|has_image \n",
+ "64 AsoRubin2016 Entity|DataSet|Individual|has_image \n",
+ "144 Baltruschat2021 Entity|DataSet|Individual|has_image \n",
+ "28 Barnes2022 Entity|DataSet|Individual|L1EM \n",
+ ".. ... ... \n",
+ "88 Zarin2019 Entity|DataSet|Individual|has_image \n",
+ "86 Zhao2023 Entity|DataSet|Individual|FAFB \n",
+ "43 Zheng2018 Entity|DataSet|Individual|has_image \n",
+ "44 Zheng2020 Entity|DataSet|Individual|has_image \n",
+ "74 Zwart2016 Entity|DataSet|Individual|has_image \n",
+ "\n",
+ " description \\\n",
+ "67 [L1 EM reconstructed neurons from Andrade et a... \n",
+ "29 [] \n",
+ "64 [For comparison of the properties of memories ... \n",
+ "144 [FAFB EM reconstructed neurons from Baltruscha... \n",
+ "28 [L1 EM reconstructed neurons from Barnes et al... \n",
+ ".. ... \n",
+ "88 [L1 EM reconstructed neurons from Zarin, Mark ... \n",
+ "86 [FAFB EM reconstructed neurons from Zhao et al... \n",
+ "43 [FAFB EM reconstructed neurons from Zheng et a... \n",
+ "44 [FAFB EM reconstructed neurons from Zheng et a... \n",
+ "74 [Zwart et al. 2016] \n",
+ "\n",
+ " miniref FlyBase PMID \\\n",
+ "67 Andrade et al., 2019, Curr. Biol. 29(3): 412--... FBrf0241389 30661802 \n",
+ "29 Aso et al., 2014, eLife 3: e04577 FBrf0227179 25535793 \n",
+ "64 Aso and Rubin, 2016, eLife 5: e16135 FBrf0233230 27441388 \n",
+ "144 Baltruschat et al., 2021, Cell Rep. 34(11): 10... FBrf0248487 33730583 \n",
+ "28 Barnes et al., 2022, PLoS ONE 17(4): e0266064 FBrf0253082 35377898 \n",
+ ".. ... ... ... \n",
+ "88 Zarin, Mark et al., 2019 \n",
+ "86 \n",
+ "43 Zheng et al., 2018, Cell 174(3): 730--743.e22 FBrf0239557 30033368 \n",
+ "44 Zheng et al., 2022, Curr. Biol. 32(15): 3334--... FBrf0254218 35797998 \n",
+ "74 Zwart et al., 2016, Neuron 91(3): 615--628 FBrf0233076 27427461 \n",
+ "\n",
+ " DOI \n",
+ "67 10.1016/j.cub.2018.12.012 \n",
+ "29 10.7554/eLife.04577 \n",
+ "64 10.7554/eLife.16135 \n",
+ "144 10.1016/j.celrep.2021.108871 \n",
+ "28 10.1371/journal.pone.0266064 \n",
+ ".. ... \n",
+ "88 10.1101/617977 \n",
+ "86 \n",
+ "43 10.1016/j.cell.2018.06.019 \n",
+ "44 10.1016/j.cub.2022.06.031 \n",
+ "74 10.1016/j.neuron.2016.06.031 \n",
+ "\n",
+ "[145 rows x 9 columns]"
+ ]
+ },
+ "execution_count": 7,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
"source": [
"# Inspect what datasets are available on VFB\n",
"\n",
"ds = vc.neo_query_wrapper.get_datasets(summary=True)\n",
"ds_tab = pd.DataFrame.from_records(ds)\n",
"ds_tab.sort_values(by=['id'])"
- ],
- "execution_count": null,
- "outputs": [
- {
- "output_type": "execute_result",
- "execution_count": 7,
- "data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 83,
- "column_count": 9,
- "columns": [
- {
- "name": "label",
- "dtype": "object",
- "stats": {
- "unique_count": 75,
- "nan_count": 0,
- "categories": [
- {
- "name": "split-GAL4 lines for dopaminergic neurons (AsoRubin2016)",
- "count": 2
- },
- {
- "name": "Grooming neurons and drivers (Hampel 2015)",
- "count": 2
- },
- {
- "name": "73 others",
- "count": 79
- }
- ]
- }
- },
- {
- "name": "symbol",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 83
- }
- ]
- }
- },
- {
- "name": "id",
- "dtype": "object",
- "stats": {
- "unique_count": 83,
- "nan_count": 0,
- "categories": [
- {
- "name": "Andrade2019",
- "count": 1
- },
- {
- "name": "Aso2014",
- "count": 1
- },
- {
- "name": "81 others",
- "count": 81
- }
- ]
- }
- },
- {
- "name": "tags",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Entity|Individual|DataSet",
- "count": 83
- }
- ]
- }
- },
- {
- "name": "description",
- "dtype": "object",
- "stats": {
- "unique_count": 83,
- "nan_count": 0,
- "categories": [
- {
- "name": "[]",
- "count": 16
- },
- {
- "name": "['']",
- "count": 4
- },
- {
- "name": "56 others",
- "count": 63
- }
- ]
- }
- },
- {
- "name": "miniref",
- "dtype": "object",
- "stats": {
- "unique_count": 65,
- "nan_count": 0,
- "categories": [
- {
- "name": "Dolan et al., 2019, eLife 8: e43079",
- "count": 3
- },
- {
- "name": "",
- "count": 3
- },
- {
- "name": "63 others",
- "count": 77
- }
- ]
- }
- },
- {
- "name": "FlyBase",
- "dtype": "object",
- "stats": {
- "unique_count": 50,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 22
- },
- {
- "name": "FBrf0242477",
- "count": 3
- },
- {
- "name": "48 others",
- "count": 58
- }
- ]
- }
- },
- {
- "name": "PMID",
- "dtype": "object",
- "stats": {
- "unique_count": 49,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 23
- },
- {
- "name": "31112130",
- "count": 3
- },
- {
- "name": "47 others",
- "count": 57
- }
- ]
- }
- },
- {
- "name": "DOI",
- "dtype": "object",
- "stats": {
- "unique_count": 65,
- "nan_count": 0,
- "categories": [
- {
- "name": "10.7554/eLife.43079",
- "count": 3
- },
- {
- "name": "",
- "count": 3
- },
- {
- "name": "63 others",
- "count": 77
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "label": "EM L1 Andrade et al. 2019",
- "symbol": "",
- "id": "Andrade2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Andrade et al 2019']",
- "miniref": "Andrade et al., 2019, Curr. Biol. 29(3): 412--425.e3",
- "FlyBase": "FBrf0241389",
- "PMID": "30661802",
- "DOI": "10.1016/j.cub.2018.12.012",
- "_deepnote_index_column": 81
- },
- {
- "label": "MBONs and split-GAL4 lines that target them (Aso2014)",
- "symbol": "",
- "id": "Aso2014",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Aso et al., 2014, eLife 3: e04577",
- "FlyBase": "FBrf0227179",
- "PMID": "25535793",
- "DOI": "10.7554/eLife.04577",
- "_deepnote_index_column": 16
- },
- {
- "label": "split-GAL4 lines for dopaminergic neurons (AsoRubin2016)",
- "symbol": "",
- "id": "AsoRubin2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types']",
- "miniref": "Aso and Rubin, 2016, eLife 5: e16135",
- "FlyBase": "FBrf0233230",
- "PMID": "27441388",
- "DOI": "10.7554/eLife.16135",
- "_deepnote_index_column": 19
- },
- {
- "label": "EM FAFB Bates and Schlegel et al 2020",
- "symbol": "",
- "id": "BatesSchlegel2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Bates and Schlegel et al 2020']",
- "miniref": "Bates and Schlegel et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1016/j.cub.2020.06.042",
- "_deepnote_index_column": 52
- },
- {
- "label": "Larval olfactory system neurons - EM (Berk2016)",
- "symbol": "",
- "id": "Berck2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Berck, Khandelwal et al. 2016']",
- "miniref": "Berck et al., 2016, eLife 5: e14859",
- "FlyBase": "FBrf0232785",
- "PMID": "27177418",
- "DOI": "10.7554/eLife.14859",
- "_deepnote_index_column": 0
- },
- {
- "label": "BrainName neuropils and tracts - Ito half-brain",
- "symbol": "",
- "id": "BrainName_Ito_half_brain",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Ito et al., 2014, Neuron 81(4): 755--765",
- "FlyBase": "FBrf0224194",
- "PMID": "24559671",
- "DOI": "10.1016/j.neuron.2013.12.017",
- "_deepnote_index_column": 37
- },
- {
- "label": "Nociceptive system neurons - EM (Burgos2017)",
- "symbol": "",
- "id": "Burgos2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['Burgos et al 2018']",
- "miniref": "Burgos et al., 2018, eLife 7: e26016",
- "FlyBase": "FBrf0238464",
- "PMID": "29528286",
- "DOI": "10.7554/eLife.26016",
- "_deepnote_index_column": 39
- },
- {
- "label": "Adult Brain fru clones (Cachero2010)",
- "symbol": "",
- "id": "Cachero2010",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Cachero et al., 2010, Curr. Biol. 20(18): 1589--1601",
- "FlyBase": "FBrf0211926",
- "PMID": "20832311",
- "DOI": "10.1016/j.cub.2010.07.045",
- "_deepnote_index_column": 12
- },
- {
- "label": "EM L1 Carreira-Rosario, Arzan Zarin, Clark et al. 2018",
- "symbol": "",
- "id": "CarreiraRosario2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Carreira-Rosario, Arzan Zarin, Clark et al. 2018']",
- "miniref": "Carreira-Rosario et al., 2018, eLife 7: e38554",
- "FlyBase": "FBrf0239825",
- "PMID": "30070205",
- "DOI": "10.7554/eLife.38554",
- "_deepnote_index_column": 31
- },
- {
- "label": "FlyCircuit 1.0 - single neurons (Chiang2010)",
- "symbol": "",
- "id": "Chiang2010",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Chiang et al., 2011, Curr. Biol. 21(1): 1--11",
- "FlyBase": "FBrf0212704",
- "PMID": "21129968",
- "DOI": "10.1016/j.cub.2010.11.056",
- "_deepnote_index_column": 60
- },
- {
- "label": "EM FAFB Coates et al 2020",
- "symbol": "",
- "id": "Coates2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Coates et al 2020']",
- "miniref": "Coates et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1523/JNEUROSCI.0552-20.2020",
- "_deepnote_index_column": 2
- },
- {
- "label": "NBLAST clustering of FlyCircuit 1.0 neurons (Costa2016)",
- "symbol": "",
- "id": "CostaJefferis_v3",
- "tags": "Entity|Individual|DataSet",
- "description": "['Version 3 NBLAST clustering of FlyCircuit 1.0 neurons']",
- "miniref": "Costa et al., 2016, Neuron 91(2): 293--311",
- "FlyBase": "FBrf0232991",
- "PMID": "27373836",
- "DOI": "10.1016/j.neuron.2016.06.012",
- "_deepnote_index_column": 9
- },
- {
- "label": "Adult VNS neuropils (Court2017)",
- "symbol": "",
- "id": "Court2017",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Court et al., 2017",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/122952",
- "_deepnote_index_column": 53
- },
- {
- "label": "Adult VNC neuropils (Court2020)",
- "symbol": "",
- "id": "Court2020",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Court et al., 2017",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/122952",
- "_deepnote_index_column": 45
- },
- {
- "label": "Dickson lab VT lines - FlyLight/Janelia images (2017)",
- "symbol": "",
- "id": "Dickson2017",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Tirian & Dickson, 2017",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/198648",
- "_deepnote_index_column": 50
- },
- {
- "label": "Dickson lab VT line collection - VDRC images",
- "symbol": "",
- "id": "Dickson_VT",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Tirian & Dickson, 2017",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/198648",
- "_deepnote_index_column": 80
- },
- {
- "label": "EM FAFB Dolan and Belliart-Guerin et al. 2018",
- "symbol": "",
- "id": "Dolan2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Dolan and Belliart-Guerin et al. 2018']",
- "miniref": "Dolan et al., 2018, Neuron 100(3): 651--668.e8",
- "FlyBase": "FBrf0240600",
- "PMID": "30244885",
- "DOI": "10.1016/j.neuron.2018.08.037",
- "_deepnote_index_column": 13
- },
- {
- "label": "EM FAFB Dolan et al. 2019",
- "symbol": "",
- "id": "Dolan2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Dolan et al. 2019']",
- "miniref": "Dolan et al., 2019, eLife 8: e43079",
- "FlyBase": "FBrf0242477",
- "PMID": "31112130",
- "DOI": "10.7554/eLife.43079",
- "_deepnote_index_column": 72
- },
- {
- "label": "Larval MB neurons - EM (Eichler2017)",
- "symbol": "",
- "id": "Eichler2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Eichler, Li, Litwin-Kumar et al. 2017']",
- "miniref": "Eichler et al., 2017, Nature 548(7666): 175--182",
- "FlyBase": "FBrf0236359",
- "PMID": "28796202",
- "DOI": "10.1038/nature23455",
- "_deepnote_index_column": 58
- },
- {
- "label": "EM L1 Eschbach et al 2020",
- "symbol": "",
- "id": "Eschbach2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Eschbach et al 2020']",
- "miniref": "Eschbach et al., 2020, Nat. Neurosci. 23(4): 544--555",
- "FlyBase": "FBrf0245294",
- "PMID": "32203499",
- "DOI": "10.1038/s41593-020-0607-9",
- "_deepnote_index_column": 24
- },
- {
- "label": "EM L1 Eschbach et al 2020b",
- "symbol": "",
- "id": "Eschbach2020b",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Eschbach et al 2020b']",
- "miniref": "Eschbach, Fushiki et al. 2020b; Circuits for integrating learnt and innate valences in the fly brain",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/2020.04.23.058339",
- "_deepnote_index_column": 59
- },
- {
- "label": "EM FAFB Felsenberg et al. 2018",
- "symbol": "",
- "id": "Felsenberg2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Felsenberg et al 2018']",
- "miniref": "Felsenberg et al., 2018, Cell 175(3): 709--722.e15",
- "FlyBase": "FBrf0240371",
- "PMID": "30245010",
- "DOI": "10.1016/j.cell.2018.08.021",
- "_deepnote_index_column": 77
- },
- {
- "label": "split-GAL4 lines for dopaminergic neurons (AsoRubin2016)",
- "symbol": "",
- "id": "FlyLight2019AsoRubin2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types']",
- "miniref": "Aso and Rubin, 2016, eLife 5: e16135",
- "FlyBase": "FBrf0233230",
- "PMID": "27441388",
- "DOI": "10.7554/eLife.16135",
- "_deepnote_index_column": 14
- },
- {
- "label": "Grooming neurons and drivers (Hampel 2015)",
- "symbol": "",
- "id": "FlyLight2019Hampel2015",
- "tags": "Entity|Individual|DataSet",
- "description": "['Images of grooming neurons and split GAL4 line drivers.']",
- "miniref": "Hampel et al., 2015, eLife 4: e08758",
- "FlyBase": "FBrf0229838",
- "PMID": "26344548",
- "DOI": "10.7554/eLife.08758",
- "_deepnote_index_column": 51
- },
- {
- "label": "Split-GAL4 lines from Klapoetke et al. 2017",
- "symbol": "",
- "id": "FlyLight2019Klapoetke2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Split-GAL4 lines used for the characterization of LPLC2 anatomy and function']",
- "miniref": "Klapoetke et al., 2017, Nature 551(7679): 237--241",
- "FlyBase": "FBrf0237184",
- "PMID": "29120418",
- "DOI": "10.1038/nature24626",
- "_deepnote_index_column": 38
- },
- {
- "label": "FlyLight split-GAL4 lines for Lateral Horn",
- "symbol": "",
- "id": "FlyLight2019LateralHorn2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019']",
- "miniref": "Dolan et al., 2019, eLife 8: e43079",
- "FlyBase": "FBrf0242477",
- "PMID": "31112130",
- "DOI": "10.7554/eLife.43079",
- "_deepnote_index_column": 22
- },
- {
- "label": "split-GAL4 lines for descending neurons (Namiki2018)",
- "symbol": "",
- "id": "FlyLight2019Namiki2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['Descending sensory-motor pathways in adult CNS']",
- "miniref": "Namiki et al., 2018, eLife 7: e34272",
- "FlyBase": "FBrf0239335",
- "PMID": "29943730",
- "DOI": "10.7554/eLife.34272",
- "_deepnote_index_column": 1
- },
- {
- "label": "split-GAL4 lines for EB neurons (Robie2017)",
- "symbol": "",
- "id": "FlyLight2019Robie2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map']",
- "miniref": "Robie et al., 2017, Cell 170(2): 393--406.e28",
- "FlyBase": "FBrf0236042",
- "PMID": "28709004",
- "DOI": "10.1016/j.cell.2017.06.032",
- "_deepnote_index_column": 18
- },
- {
- "label": "Splits targetting the visual motion pathway, Strother2017",
- "symbol": "",
- "id": "FlyLight2019Strother2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['']",
- "miniref": "Strother et al., 2017, Neuron 94(1): 168--182.e10",
- "FlyBase": "FBrf0235230",
- "PMID": "28384470",
- "DOI": "10.1016/j.neuron.2017.03.010",
- "_deepnote_index_column": 69
- },
- {
- "label": "Splits targetting CX neurons, Wolff2018",
- "symbol": "",
- "id": "FlyLight2019Wolff2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['']",
- "miniref": "FBrf0240744",
- "FlyBase": "FBrf0240744",
- "PMID": "30084503",
- "DOI": "10.1002/cne.24512",
- "_deepnote_index_column": 32
- },
- {
- "label": "split-GAL4 lines for LC VPNs (Wu2016)",
- "symbol": "",
- "id": "FlyLight2019Wu2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)']",
- "miniref": "Wu et al., 2016, eLife 5: e21022",
- "FlyBase": "FBrf0234700",
- "PMID": "28029094",
- "DOI": "10.7554/eLife.21022",
- "_deepnote_index_column": 42
- },
- {
- "label": "FlyLight - Gen1 GAL4/LexA collection (exported 2019)",
- "symbol": "",
- "id": "FlyLightGen1Set2019",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Jenett et al., 2012, Cell Rep. 2(4): 991--1001",
- "FlyBase": "FBrf0219813",
- "PMID": "23063364",
- "DOI": "10.1016/j.celrep.2012.09.011",
- "_deepnote_index_column": 33
- },
- {
- "label": "Larval peristaltic locomotor system neurons - EM (Fushiki2016)",
- "symbol": "",
- "id": "Fushiki2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Fushiki et al. 2016']",
- "miniref": "Fushiki et al., 2016, eLife 5: e13253",
- "FlyBase": "FBrf0231611",
- "PMID": "26880545",
- "DOI": "10.7554/eLife.13253",
- "_deepnote_index_column": 67
- },
- {
- "label": "Nociceptive circuit neurons - EM (Gerhard2017)",
- "symbol": "",
- "id": "Gerhard2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Gerhard et al. 2017']",
- "miniref": "Gerhard et al., 2017, eLife 6: e29089",
- "FlyBase": "FBrf0237057",
- "PMID": "29058674",
- "DOI": "10.7554/eLife.29089",
- "_deepnote_index_column": 56
- },
- {
- "label": "Grooming neurons and drivers (Hampel 2015)",
- "symbol": "",
- "id": "Hampel2015",
- "tags": "Entity|Individual|DataSet",
- "description": "['Images of grooming neurons and split GAL4 line drivers.']",
- "miniref": "Hampel et al., 2015, eLife 4: e08758",
- "FlyBase": "FBrf0229838",
- "PMID": "26344548",
- "DOI": "10.7554/eLife.08758",
- "_deepnote_index_column": 61
- },
- {
- "label": "LexA driver targetting mechanosensory eye bristles (Hampel2017)",
- "symbol": "",
- "id": "Hampel2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Simultaneous activation of parallel sensory pathways promotes a grooming sequence in Drosophila']",
- "miniref": "Hampel et al., 2017, eLife 6: e28804",
- "FlyBase": "FBrf0236775",
- "PMID": "28887878",
- "DOI": "10.7554/eLife.28804",
- "_deepnote_index_column": 57
- },
- {
- "label": "EM FAFB Hampel and Eichler et al 2020",
- "symbol": "",
- "id": "HampelEichler2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Hampel and Eichler et al 2020']",
- "miniref": "Hampel et al., 2020, eLife 9: e59976",
- "FlyBase": "FBrf0247223",
- "PMID": "33103999",
- "DOI": "10.7554/eLife.59976",
- "_deepnote_index_column": 26
- },
- {
- "label": "Eve+ neurons, sensorimotor circuit - EM (Heckscher2015)",
- "symbol": "",
- "id": "Heckscher2015",
- "tags": "Entity|Individual|DataSet",
- "description": "['Heckscher et al. 2015']",
- "miniref": "Heckscher et al., 2015, Neuron 88(2): 314--329",
- "FlyBase": "FBrf0229965",
- "PMID": "26439528",
- "DOI": "10.1016/j.neuron.2015.09.009",
- "_deepnote_index_column": 68
- },
- {
- "label": "Ito lab adult brain lineage clone image set",
- "symbol": "",
- "id": "Ito2013",
- "tags": "Entity|Individual|DataSet",
- "description": "[\"An exhaustive set of lineage clones covering the adult brain from Kei Ito's lab.\"]",
- "miniref": "Ito et al., 2013, Curr. Biol. 23(8): 644--655",
- "FlyBase": "FBrf0221438",
- "PMID": "23541729",
- "DOI": "10.1016/j.cub.2013.03.015",
- "_deepnote_index_column": 47
- },
- {
- "label": "JRC 2018 templates & ROIs",
- "symbol": "",
- "id": "JRC2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['JRC2018 templates and regions of interest']",
- "miniref": "Bogovic et al., 2019, biorxiv",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/376384",
- "_deepnote_index_column": 79
- },
- {
- "label": "FlyLight - GMR GAL4 collection (Jenett2012)",
- "symbol": "",
- "id": "Jenett2012",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Jenett et al., 2012, Cell Rep. 2(4): 991--1001",
- "FlyBase": "FBrf0219813",
- "PMID": "23063364",
- "DOI": "10.1016/j.celrep.2012.09.011",
- "_deepnote_index_column": 23
- },
- {
- "label": "BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)",
- "symbol": "",
- "id": "JenettShinomya_BrainName",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Ito et al., 2014, Neuron 81(4): 755--765",
- "FlyBase": "FBrf0224194",
- "PMID": "24559671",
- "DOI": "10.1016/j.neuron.2013.12.017",
- "_deepnote_index_column": 44
- },
- {
- "label": "larval sensorimotor decision pathways (Jovanic2016)",
- "symbol": "",
- "id": "Jovanic2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Jovanic, Schneider-Mizell et al. 2016']",
- "miniref": "Jovanic et al., 2016, Cell 167(3): 858--870.e19",
- "FlyBase": "FBrf0233796",
- "PMID": "27720450",
- "DOI": "10.1016/j.cell.2016.09.009",
- "_deepnote_index_column": 63
- },
- {
- "label": "EM L1 Jovanic et al. 2019",
- "symbol": "",
- "id": "Jovanic2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Jovanic et al. 2019']",
- "miniref": "Jovanic et al., 2019, Curr. Biol. 29(4): 554--566.e4",
- "FlyBase": "FBrf0241547",
- "PMID": "30744969",
- "DOI": "10.1016/j.cub.2019.01.009",
- "_deepnote_index_column": 64
- },
- {
- "label": "EM FAFB Kim et al 2020",
- "symbol": "",
- "id": "Kim2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Kim et al 2020']",
- "miniref": "Kim et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1002/cne.24877",
- "_deepnote_index_column": 10
- },
- {
- "label": "Split-GAL4 lines from Klapoetke et al. 2017",
- "symbol": "",
- "id": "Klapoetke2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Split-GAL4 lines used for the characterization of LPLC2 anatomy and function']",
- "miniref": "Klapoetke et al., 2017, Nature 551(7679): 237--241",
- "FlyBase": "FBrf0237184",
- "PMID": "29120418",
- "DOI": "10.1038/nature24626",
- "_deepnote_index_column": 76
- },
- {
- "label": "BrainTrap lines (Knowles-Barley2010)",
- "symbol": "",
- "id": "Knowles_Barley2010",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Knowles-Barley et al., 2010, Database (Oxford) 2010: baq005",
- "FlyBase": "FBrf0211243",
- "PMID": "20624714",
- "DOI": "10.1093/database/baq005",
- "_deepnote_index_column": 49
- },
- {
- "label": "Third order olfactory neurons involved in pheromone response - backfills (Kohl2013)",
- "symbol": "",
- "id": "Kohl2013",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Kohl et al., 2013, Cell 155(7): 1610--1623",
- "FlyBase": "FBrf0223724",
- "PMID": "24360281",
- "DOI": "10.1016/j.cell.2013.11.025",
- "_deepnote_index_column": 8
- },
- {
- "label": "larval visual circuit neurons (Larderet2017)",
- "symbol": "",
- "id": "Larderet2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Larderet, Fritsch et al. 2017']",
- "miniref": "Larderet et al., 2017, eLife 6: e28387",
- "FlyBase": "FBrf0237760",
- "PMID": "",
- "DOI": "10.7554/eLife.28387",
- "_deepnote_index_column": 70
- },
- {
- "label": "FlyLight split-GAL4 lines for Lateral Horn",
- "symbol": "",
- "id": "LateralHorn2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019']",
- "miniref": "Dolan et al., 2019, eLife 8: e43079",
- "FlyBase": "FBrf0242477",
- "PMID": "31112130",
- "DOI": "10.7554/eLife.43079",
- "_deepnote_index_column": 66
- },
- {
- "label": "central brain neurons by lineage, Lee2020",
- "symbol": "",
- "id": "Lee2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['A catalogue of single neuron images covering 18 central brain lineages.']",
- "miniref": "Lee et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.7554/eLife.53518",
- "_deepnote_index_column": 4
- },
- {
- "label": "Neurons involved in courtship and song (Lilvis2018)",
- "symbol": "",
- "id": "Lilvis2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['single example of pIP10 neuron in adult CNS']",
- "miniref": "Ding et al., 2017",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/238147",
- "_deepnote_index_column": 74
- },
- {
- "label": "EM FAFB Marin et al 2020",
- "symbol": "",
- "id": "Marin2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Marin et al 2020']",
- "miniref": "Marin et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1016/j.cub.2020.06.028",
- "_deepnote_index_column": 46
- },
- {
- "label": "EM L1 Mark et al. 2019",
- "symbol": "",
- "id": "Mark2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Mark et al. 2019']",
- "miniref": "Mark et al., 2019",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/617936",
- "_deepnote_index_column": 20
- },
- {
- "label": "AMMC local and projection neurons (Matsuo2016)",
- "symbol": "",
- "id": "Matsuo2016",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Matsuo et al., 2016, J. Comp. Neurol. 524(6): 1099--1164",
- "FlyBase": "FBrf0230862",
- "PMID": "26762251",
- "DOI": "10.1002/cne.23955",
- "_deepnote_index_column": 25
- },
- {
- "label": "EM L1 Miroschnikow et al. 2018",
- "symbol": "",
- "id": "Miroschnikow2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Miroschnikow et al. 2018']",
- "miniref": "Miroschnikow et al., 2018, eLife 7: e40247",
- "FlyBase": "FBrf0240975",
- "PMID": "30526854",
- "DOI": "10.7554/eLife.40247",
- "_deepnote_index_column": 82
- },
- {
- "label": "EM FAFB Morimoto et al 2020",
- "symbol": "",
- "id": "Morimoto2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Morimoto et al 2020']",
- "miniref": "Morimoto et al., 2020, eLife 9: e57685",
- "FlyBase": "FBrf0247630",
- "PMID": "33205753",
- "DOI": "10.7554/eLife.57685",
- "_deepnote_index_column": 40
- },
- {
- "label": "split-GAL4 lines for descending neurons (Namiki2018)",
- "symbol": "",
- "id": "Namiki2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['Descending sensory-motor pathways in adult CNS']",
- "miniref": "Namiki et al., 2018, eLife 7: e34272",
- "FlyBase": "FBrf0239335",
- "PMID": "29943730",
- "DOI": "10.7554/eLife.34272",
- "_deepnote_index_column": 78
- },
- {
- "label": "Neurons involved in larval fast escape response - EM (Ohyama2016)",
- "symbol": "",
- "id": "Ohyama2015",
- "tags": "Entity|Individual|DataSet",
- "description": "['Ohyama, Schneider-Mizell et al. 2015']",
- "miniref": "Ohyama et al., 2015, Nature 520(7549): 633--639",
- "FlyBase": "FBrf0228257",
- "PMID": "25896325",
- "DOI": "10.1038/nature14297",
- "_deepnote_index_column": 6
- },
- {
- "label": "EM FAFB Otto et al 2020",
- "symbol": "",
- "id": "Otto2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Otto et al 2020']",
- "miniref": "Otto et al., 2020, Curr. Biol. 30(16): 3200--3211.e8",
- "FlyBase": "FBrf0246510",
- "PMID": "32619479",
- "DOI": "10.1016/j.cub.2020.05.077",
- "_deepnote_index_column": 41
- },
- {
- "label": "split-GAL4 lines for EB neurons (Robie2017)",
- "symbol": "",
- "id": "Robie2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map']",
- "miniref": "Robie et al., 2017, Cell 170(2): 393--406.e28",
- "FlyBase": "FBrf0236042",
- "PMID": "28709004",
- "DOI": "10.1016/j.cell.2017.06.032",
- "_deepnote_index_column": 75
- },
- {
- "label": "EM FAFB Sayin et al 2019",
- "symbol": "",
- "id": "Sayin2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Sayin et al 2019']",
- "miniref": "Sayin et al., 2019, Neuron 104(3): 544--558.e6",
- "FlyBase": "FBrf0243986",
- "PMID": "31471123",
- "DOI": "10.1016/j.neuron.2019.07.028",
- "_deepnote_index_column": 43
- },
- {
- "label": "larval hugin neurons - EM (Schlegel2016)",
- "symbol": "",
- "id": "Schlegel2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Schlegel et al. 2016']",
- "miniref": "Schlegel et al., 2016, eLife 5: e16799",
- "FlyBase": "FBrf0234450",
- "PMID": "27845623",
- "DOI": "10.7554/eLife.16799",
- "_deepnote_index_column": 5
- },
- {
- "label": "Splits targetting the visual motion pathway, Strother2017",
- "symbol": "",
- "id": "Strother2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['']",
- "miniref": "Strother et al., 2017, Neuron 94(1): 168--182.e10",
- "FlyBase": "FBrf0235230",
- "PMID": "28384470",
- "DOI": "10.1016/j.neuron.2017.03.010",
- "_deepnote_index_column": 36
- },
- {
- "label": "Larval wave neurons and circuit partners - EM (Takagi2017)",
- "symbol": "",
- "id": "Takagi2017",
- "tags": "Entity|Individual|DataSet",
- "description": "['Takagi et al. 2017']",
- "miniref": "Takagi et al., 2017, Neuron 96(6): 1373--1387.e6",
- "FlyBase": "FBrf0237618",
- "PMID": "29198754",
- "DOI": "10.1016/j.neuron.2017.10.030",
- "_deepnote_index_column": 71
- },
- {
- "label": "EM L1 Tastekin et al 2018",
- "symbol": "",
- "id": "Tastekin2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Tastekin et al 2018']",
- "miniref": "Tastekin et al., 2018, eLife 7: e38740",
- "FlyBase": "FBrf0240828",
- "PMID": "30465650",
- "DOI": "10.7554/eLife.38740",
- "_deepnote_index_column": 35
- },
- {
- "label": "L3 Larval CNS Template (Truman2016)",
- "symbol": "",
- "id": "Truman2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Template image by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.']",
- "miniref": "",
- "FlyBase": "",
- "PMID": "",
- "DOI": "",
- "_deepnote_index_column": 21
- },
- {
- "label": "Truman Larval Flip-Out Collection",
- "symbol": "",
- "id": "TrumanWood2018public",
- "tags": "Entity|Individual|DataSet",
- "description": "['Images by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.']",
- "miniref": "",
- "FlyBase": "",
- "PMID": "",
- "DOI": "",
- "_deepnote_index_column": 65
- },
- {
- "label": "EM FAFB Turner-Evans et al 2020",
- "symbol": "",
- "id": "Turner_Evans2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Turner-Evans et al 2020']",
- "miniref": "Turner-Evans et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1016/j.neuron.2020.08.006",
- "_deepnote_index_column": 73
- },
- {
- "label": "EM FAFB Wang et al 2020a",
- "symbol": "",
- "id": "Wang2020a",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Wang et al 2020a']",
- "miniref": "Wang et al., 2020, Nature 579(7797): 101--105",
- "FlyBase": "FBrf0245074",
- "PMID": "32103180",
- "DOI": "10.1038/s41586-020-2055-9",
- "_deepnote_index_column": 55
- },
- {
- "label": "EM FAFB Wang et al 2020b",
- "symbol": "",
- "id": "Wang2020b",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Wang et al 2020b']",
- "miniref": "Wang et al., 2020, Curr. Biol. 30(19): 3749--3760.e3",
- "FlyBase": "FBrf0246914",
- "PMID": "32795445",
- "DOI": "10.1016/j.cub.2020.07.083",
- "_deepnote_index_column": 11
- },
- {
- "label": "Splits targetting CX neurons, Wolff2018",
- "symbol": "",
- "id": "Wolff2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['']",
- "miniref": "FBrf0240744",
- "FlyBase": "FBrf0240744",
- "PMID": "30084503",
- "DOI": "10.1002/cne.24512",
- "_deepnote_index_column": 27
- },
- {
- "label": "L3 neuropils (WoodHartenstein2018)",
- "symbol": "",
- "id": "WoodHartenstein2018",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "",
- "FlyBase": "",
- "PMID": "",
- "DOI": "",
- "_deepnote_index_column": 62
- },
- {
- "label": "split-GAL4 lines for LC VPNs (Wu2016)",
- "symbol": "",
- "id": "Wu2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)']",
- "miniref": "Wu et al., 2016, eLife 5: e21022",
- "FlyBase": "FBrf0234700",
- "PMID": "28029094",
- "DOI": "10.7554/eLife.21022",
- "_deepnote_index_column": 54
- },
- {
- "label": "Split GAL4 lines for dopaminergic neurons, Xie2018",
- "symbol": "",
- "id": "Xie2018",
- "tags": "Entity|Individual|DataSet",
- "description": "[]",
- "miniref": "Xie et al., 2018, Cell Rep. 23(2): 652--665",
- "FlyBase": "FBrf0238545",
- "PMID": "29642019",
- "DOI": "10.1016/j.celrep.2018.03.068",
- "_deepnote_index_column": 17
- },
- {
- "label": "JRC_FlyEM_Hemibrain neurons Version 1.0.1",
- "symbol": "",
- "id": "Xu2020Neurons",
- "tags": "Entity|Individual|DataSet",
- "description": "['Version 1.0.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity']",
- "miniref": "Xu et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/2020.01.21.911859",
- "_deepnote_index_column": 29
- },
- {
- "label": "JRC_FlyEM_Hemibrain neurons Version 1.1",
- "symbol": "",
- "id": "Xu2020NeuronsV1point1",
- "tags": "Entity|Individual|DataSet",
- "description": "['Version 1.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity']",
- "miniref": "Xu et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/2020.01.21.911859",
- "_deepnote_index_column": 7
- },
- {
- "label": "JRC_FlyEM_Hemibrain painted domains",
- "symbol": "",
- "id": "Xu2020roi",
- "tags": "Entity|Individual|DataSet",
- "description": "['Synapse segmentation and regions of interest on JRC_FlyEM_Hemibrain']",
- "miniref": "Xu et al., 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/2020.01.21.911859",
- "_deepnote_index_column": 3
- },
- {
- "label": "Lee lab adult brain lineage clone image set",
- "symbol": "",
- "id": "Yu2013",
- "tags": "Entity|Individual|DataSet",
- "description": "[\"An exhaustive set of lineage clones covering the adult brain from Tzumin Lee's lab.\"]",
- "miniref": "Yu et al., 2013, Curr. Biol. 23(8): 633--643",
- "FlyBase": "FBrf0221412",
- "PMID": "23541733",
- "DOI": "10.1016/j.cub.2013.02.057",
- "_deepnote_index_column": 30
- },
- {
- "label": "EM L1 Zarin, Mark et al. 2019",
- "symbol": "",
- "id": "Zarin2019",
- "tags": "Entity|Individual|DataSet",
- "description": "['L1 EM reconstructed neurons from Zarin, Mark et al. 2019']",
- "miniref": "Zarin, Mark et al., 2019",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/617977",
- "_deepnote_index_column": 15
- },
- {
- "label": "EM FAFB Zheng et al 2018",
- "symbol": "",
- "id": "Zheng2018",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Zheng et al 2018']",
- "miniref": "Zheng et al., 2018, Cell 174(3): 730--743.e22",
- "FlyBase": "FBrf0239557",
- "PMID": "30033368",
- "DOI": "10.1016/j.cell.2018.06.019",
- "_deepnote_index_column": 48
- },
- {
- "label": "EM FAFB Zheng et al 2020",
- "symbol": "",
- "id": "Zheng2020",
- "tags": "Entity|Individual|DataSet",
- "description": "['FAFB EM reconstructed neurons from Zheng et al 2020']",
- "miniref": "Zheng et al. 2020",
- "FlyBase": "",
- "PMID": "",
- "DOI": "10.1101/2020.04.17.047167",
- "_deepnote_index_column": 34
- },
- {
- "label": "Larval motor circuit neurons (Zwart2016)",
- "symbol": "",
- "id": "Zwart2016",
- "tags": "Entity|Individual|DataSet",
- "description": "['Zwart et al. 2016']",
- "miniref": "Zwart et al., 2016, Neuron 91(3): 615--628",
- "FlyBase": "FBrf0233076",
- "PMID": "27427461",
- "DOI": "10.1016/j.neuron.2016.06.031",
- "_deepnote_index_column": 28
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " label symbol \\\n81 EM L1 Andrade et al. 2019 \n16 MBONs and split-GAL4 lines that target them (A... \n19 split-GAL4 lines for dopaminergic neurons (Aso... \n52 EM FAFB Bates and Schlegel et al 2020 \n0 Larval olfactory system neurons - EM (Berk2016) \n.. ... ... \n30 Lee lab adult brain lineage clone image set \n15 EM L1 Zarin, Mark et al. 2019 \n48 EM FAFB Zheng et al 2018 \n34 EM FAFB Zheng et al 2020 \n28 Larval motor circuit neurons (Zwart2016) \n\n id tags \\\n81 Andrade2019 Entity|Individual|DataSet \n16 Aso2014 Entity|Individual|DataSet \n19 AsoRubin2016 Entity|Individual|DataSet \n52 BatesSchlegel2020 Entity|Individual|DataSet \n0 Berck2016 Entity|Individual|DataSet \n.. ... ... \n30 Yu2013 Entity|Individual|DataSet \n15 Zarin2019 Entity|Individual|DataSet \n48 Zheng2018 Entity|Individual|DataSet \n34 Zheng2020 Entity|Individual|DataSet \n28 Zwart2016 Entity|Individual|DataSet \n\n description \\\n81 [L1 EM reconstructed neurons from Andrade et a... \n16 [] \n19 [For comparison of the properties of memories ... \n52 [FAFB EM reconstructed neurons from Bates and ... \n0 [Berck, Khandelwal et al. 2016] \n.. ... \n30 [An exhaustive set of lineage clones covering ... \n15 [L1 EM reconstructed neurons from Zarin, Mark ... \n48 [FAFB EM reconstructed neurons from Zheng et a... \n34 [FAFB EM reconstructed neurons from Zheng et a... \n28 [Zwart et al. 2016] \n\n miniref FlyBase PMID \\\n81 Andrade et al., 2019, Curr. Biol. 29(3): 412--... FBrf0241389 30661802 \n16 Aso et al., 2014, eLife 3: e04577 FBrf0227179 25535793 \n19 Aso and Rubin, 2016, eLife 5: e16135 FBrf0233230 27441388 \n52 Bates and Schlegel et al., 2020 \n0 Berck et al., 2016, eLife 5: e14859 FBrf0232785 27177418 \n.. ... ... ... \n30 Yu et al., 2013, Curr. Biol. 23(8): 633--643 FBrf0221412 23541733 \n15 Zarin, Mark et al., 2019 \n48 Zheng et al., 2018, Cell 174(3): 730--743.e22 FBrf0239557 30033368 \n34 Zheng et al. 2020 \n28 Zwart et al., 2016, Neuron 91(3): 615--628 FBrf0233076 27427461 \n\n DOI \n81 10.1016/j.cub.2018.12.012 \n16 10.7554/eLife.04577 \n19 10.7554/eLife.16135 \n52 10.1016/j.cub.2020.06.042 \n0 10.7554/eLife.14859 \n.. ... \n30 10.1016/j.cub.2013.02.057 \n15 10.1101/617977 \n48 10.1016/j.cell.2018.06.019 \n34 10.1101/2020.04.17.047167 \n28 10.1016/j.neuron.2016.06.031 \n\n[83 rows x 9 columns]",
- "text/html": "\n\n
\n \n \n | \n label | \n symbol | \n id | \n tags | \n description | \n miniref | \n FlyBase | \n PMID | \n DOI | \n
\n \n \n \n 81 | \n EM L1 Andrade et al. 2019 | \n | \n Andrade2019 | \n Entity|Individual|DataSet | \n [L1 EM reconstructed neurons from Andrade et a... | \n Andrade et al., 2019, Curr. Biol. 29(3): 412--... | \n FBrf0241389 | \n 30661802 | \n 10.1016/j.cub.2018.12.012 | \n
\n \n 16 | \n MBONs and split-GAL4 lines that target them (A... | \n | \n Aso2014 | \n Entity|Individual|DataSet | \n [] | \n Aso et al., 2014, eLife 3: e04577 | \n FBrf0227179 | \n 25535793 | \n 10.7554/eLife.04577 | \n
\n \n 19 | \n split-GAL4 lines for dopaminergic neurons (Aso... | \n | \n AsoRubin2016 | \n Entity|Individual|DataSet | \n [For comparison of the properties of memories ... | \n Aso and Rubin, 2016, eLife 5: e16135 | \n FBrf0233230 | \n 27441388 | \n 10.7554/eLife.16135 | \n
\n \n 52 | \n EM FAFB Bates and Schlegel et al 2020 | \n | \n BatesSchlegel2020 | \n Entity|Individual|DataSet | \n [FAFB EM reconstructed neurons from Bates and ... | \n Bates and Schlegel et al., 2020 | \n | \n | \n 10.1016/j.cub.2020.06.042 | \n
\n \n 0 | \n Larval olfactory system neurons - EM (Berk2016) | \n | \n Berck2016 | \n Entity|Individual|DataSet | \n [Berck, Khandelwal et al. 2016] | \n Berck et al., 2016, eLife 5: e14859 | \n FBrf0232785 | \n 27177418 | \n 10.7554/eLife.14859 | \n
\n \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n
\n \n 30 | \n Lee lab adult brain lineage clone image set | \n | \n Yu2013 | \n Entity|Individual|DataSet | \n [An exhaustive set of lineage clones covering ... | \n Yu et al., 2013, Curr. Biol. 23(8): 633--643 | \n FBrf0221412 | \n 23541733 | \n 10.1016/j.cub.2013.02.057 | \n
\n \n 15 | \n EM L1 Zarin, Mark et al. 2019 | \n | \n Zarin2019 | \n Entity|Individual|DataSet | \n [L1 EM reconstructed neurons from Zarin, Mark ... | \n Zarin, Mark et al., 2019 | \n | \n | \n 10.1101/617977 | \n
\n \n 48 | \n EM FAFB Zheng et al 2018 | \n | \n Zheng2018 | \n Entity|Individual|DataSet | \n [FAFB EM reconstructed neurons from Zheng et a... | \n Zheng et al., 2018, Cell 174(3): 730--743.e22 | \n FBrf0239557 | \n 30033368 | \n 10.1016/j.cell.2018.06.019 | \n
\n \n 34 | \n EM FAFB Zheng et al 2020 | \n | \n Zheng2020 | \n Entity|Individual|DataSet | \n [FAFB EM reconstructed neurons from Zheng et a... | \n Zheng et al. 2020 | \n | \n | \n 10.1101/2020.04.17.047167 | \n
\n \n 28 | \n Larval motor circuit neurons (Zwart2016) | \n | \n Zwart2016 | \n Entity|Individual|DataSet | \n [Zwart et al. 2016] | \n Zwart et al., 2016, Neuron 91(3): 615--628 | \n FBrf0233076 | \n 27427461 | \n 10.1016/j.neuron.2016.06.031 | \n
\n \n
\n
83 rows × 9 columns
\n
"
- },
- "metadata": {}
- }
]
},
{
"cell_type": "code",
+ "execution_count": 8,
"metadata": {
- "tags": [],
"cell_id": "00011-0813a13c-a41c-4399-86ea-af6b1934912b",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "8d995be0",
"execution_millis": 429,
- "output_cleared": false,
"execution_start": 1614738319313,
- "deepnote_cell_type": "code"
+ "output_cleared": false,
+ "source_hash": "8d995be0",
+ "tags": []
},
- "source": [
- "sayin_tab = pd.DataFrame.from_records(vc.get_instances_by_dataset('Sayin2019', summary=True))\n",
- "sayin_tab"
- ],
- "execution_count": null,
"outputs": [
{
- "output_type": "execute_result",
- "execution_count": 12,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 2,
- "column_count": 11,
- "columns": [
- {
- "name": "label",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "OA-VPM3 (FAFB:1329078)",
- "count": 1
- },
- {
- "name": "OA-VPM4 (FAFB:1191261)",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "symbol",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "id",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_001001dr",
- "count": 1
- },
- {
- "name": "VFB_001001dq",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "tags",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Entity|Octopaminergic|Adult|Anatomy|has_image|Cell|Individual|has_neuron_connectivity|Nervous_system|Neuron",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "parents_label",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "octopaminergic VPM3 neuron",
- "count": 1
- },
- {
- "name": "octopaminergic VPM4 neuron",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "parents_id",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "FBbt_00110151",
- "count": 1
- },
- {
- "name": "FBbt_00110152",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "catmaid_fafb",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "accession",
- "dtype": "object",
- "stats": {
- "unique_count": 2,
- "nan_count": 0,
- "categories": [
- {
- "name": "1329078",
- "count": 1
- },
- {
- "name": "1191261",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "templates",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "JRC2018Unisex",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "dataset",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "Sayin2019",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "license",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "label": "OA-VPM3 (FAFB:1329078)",
- "symbol": "",
- "id": "VFB_001001dr",
- "tags": "Entity|Octopaminergic|Adult|Anatomy|has_image|Cell|Individual|has_neuron_connectivity|Nervous_system|Neuron",
- "parents_label": "octopaminergic VPM3 neuron",
- "parents_id": "FBbt_00110151",
- "data_source": "catmaid_fafb",
- "accession": "1329078",
- "templates": "JRC2018Unisex",
- "dataset": "Sayin2019",
- "license": "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
- "_deepnote_index_column": 0
- },
- {
- "label": "OA-VPM4 (FAFB:1191261)",
- "symbol": "",
- "id": "VFB_001001dq",
- "tags": "Entity|Octopaminergic|Adult|Anatomy|has_image|Cell|Individual|has_neuron_connectivity|Nervous_system|Neuron",
- "parents_label": "octopaminergic VPM4 neuron",
- "parents_id": "FBbt_00110152",
- "data_source": "catmaid_fafb",
- "accession": "1191261",
- "templates": "JRC2018Unisex",
- "dataset": "Sayin2019",
- "license": "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
- "_deepnote_index_column": 1
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " label symbol id \\\n0 OA-VPM3 (FAFB:1329078) VFB_001001dr \n1 OA-VPM4 (FAFB:1191261) VFB_001001dq \n\n tags \\\n0 Entity|Octopaminergic|Adult|Anatomy|has_image|... \n1 Entity|Octopaminergic|Adult|Anatomy|has_image|... \n\n parents_label parents_id data_source accession \\\n0 octopaminergic VPM3 neuron FBbt_00110151 catmaid_fafb 1329078 \n1 octopaminergic VPM4 neuron FBbt_00110152 catmaid_fafb 1191261 \n\n templates dataset license \n0 JRC2018Unisex Sayin2019 https://creativecommons.org/licenses/by-sa/4.0... \n1 JRC2018Unisex Sayin2019 https://creativecommons.org/licenses/by-sa/4.0... ",
- "text/html": "\n\n
\n \n \n | \n label | \n symbol | \n id | \n tags | \n parents_label | \n parents_id | \n data_source | \n accession | \n templates | \n dataset | \n license | \n
\n \n \n \n 0 | \n OA-VPM3 (FAFB:1329078) | \n | \n VFB_001001dr | \n Entity|Octopaminergic|Adult|Anatomy|has_image|... | \n octopaminergic VPM3 neuron | \n FBbt_00110151 | \n catmaid_fafb | \n 1329078 | \n JRC2018Unisex | \n Sayin2019 | \n https://creativecommons.org/licenses/by-sa/4.0... | \n
\n \n 1 | \n OA-VPM4 (FAFB:1191261) | \n | \n VFB_001001dq | \n Entity|Octopaminergic|Adult|Anatomy|has_image|... | \n octopaminergic VPM4 neuron | \n FBbt_00110152 | \n catmaid_fafb | \n 1191261 | \n JRC2018Unisex | \n Sayin2019 | \n https://creativecommons.org/licenses/by-sa/4.0... | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " label | \n",
+ " symbol | \n",
+ " id | \n",
+ " tags | \n",
+ " parents_label | \n",
+ " parents_id | \n",
+ " data_source | \n",
+ " accession | \n",
+ " templates | \n",
+ " dataset | \n",
+ " license | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " OA-VPM3 (FAFB:1329078) | \n",
+ " | \n",
+ " VFB_001001dr | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " octopaminergic VPM3 neuron | \n",
+ " FBbt_00110151 | \n",
+ " catmaid_fafb | \n",
+ " 1329078 | \n",
+ " JRC2018Unisex | \n",
+ " Sayin2019 | \n",
+ " https://creativecommons.org/licenses/by-sa/4.0... | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " OA-VPM4 (FAFB:1191261) | \n",
+ " | \n",
+ " VFB_001001dq | \n",
+ " Entity|Adult|Anatomy|Cell|Individual|Nervous_s... | \n",
+ " octopaminergic VPM4 neuron | \n",
+ " FBbt_00110152 | \n",
+ " catmaid_fafb | \n",
+ " 1191261 | \n",
+ " JRC2018Unisex | \n",
+ " Sayin2019 | \n",
+ " https://creativecommons.org/licenses/by-sa/4.0... | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " label symbol id \\\n",
+ "0 OA-VPM3 (FAFB:1329078) VFB_001001dr \n",
+ "1 OA-VPM4 (FAFB:1191261) VFB_001001dq \n",
+ "\n",
+ " tags \\\n",
+ "0 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "1 Entity|Adult|Anatomy|Cell|Individual|Nervous_s... \n",
+ "\n",
+ " parents_label parents_id data_source accession \\\n",
+ "0 octopaminergic VPM3 neuron FBbt_00110151 catmaid_fafb 1329078 \n",
+ "1 octopaminergic VPM4 neuron FBbt_00110152 catmaid_fafb 1191261 \n",
+ "\n",
+ " templates dataset license \n",
+ "0 JRC2018Unisex Sayin2019 https://creativecommons.org/licenses/by-sa/4.0... \n",
+ "1 JRC2018Unisex Sayin2019 https://creativecommons.org/licenses/by-sa/4.0... "
+ ]
},
- "metadata": {}
+ "execution_count": 8,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "sayin_tab = pd.DataFrame.from_records(vc.get_instances_by_dataset('Sayin2019', summary=True))\n",
+ "sayin_tab"
]
},
{
"cell_type": "code",
+ "execution_count": 9,
"metadata": {
- "tags": [],
"cell_id": "00013-c3cc7d86-9755-48dc-a66e-3a702ebbc015",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "962af1fb",
"execution_millis": 279,
"execution_start": 1614738289534,
- "deepnote_cell_type": "code"
+ "source_hash": "962af1fb",
+ "tags": []
},
- "source": [
- "vc.get_connected_neurons_by_type(upstream_type='LNd', downstream_type='adult descending neuron', weight=20)"
- ],
- "execution_count": null,
"outputs": [
{
- "output_type": "execute_result",
- "execution_count": 9,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 1,
- "column_count": 11,
- "columns": [
- {
- "name": "upstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchjzxx",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "upstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "LNd_R - 5813021192",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "weight",
- "dtype": "int64",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "min": 25,
- "max": 25,
- "histogram": [
- {
- "bin_start": 24.5,
- "bin_end": 24.6,
- "count": 0
- },
- {
- "bin_start": 24.6,
- "bin_end": 24.7,
- "count": 0
- },
- {
- "bin_start": 24.7,
- "bin_end": 24.8,
- "count": 0
- },
- {
- "bin_start": 24.8,
- "bin_end": 24.9,
- "count": 0
- },
- {
- "bin_start": 24.9,
- "bin_end": 25,
- "count": 0
- },
- {
- "bin_start": 25,
- "bin_end": 25.1,
- "count": 1
- },
- {
- "bin_start": 25.1,
- "bin_end": 25.2,
- "count": 0
- },
- {
- "bin_start": 25.2,
- "bin_end": 25.3,
- "count": 0
- },
- {
- "bin_start": 25.3,
- "bin_end": 25.4,
- "count": 0
- },
- {
- "bin_start": 25.4,
- "bin_end": 25.5,
- "count": 0
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchjthm",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "DNp27_R - 1072063538",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "upstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "LNd neuron",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "downstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "descending neuron of the posterior brain DNp27",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "up_data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "up_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "5813021192",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "down_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "down_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "1072063538",
- "count": 1
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "upstream_neuron_id": "VFB_jrchjzxx",
- "upstream_neuron_name": "LNd_R - 5813021192",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjthm",
- "downstream_neuron_name": "DNp27_R - 1072063538",
- "upstream_class": "LNd neuron",
- "downstream_class": "descending neuron of the posterior brain DNp27",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813021192",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1072063538",
- "_deepnote_index_column": 0
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " upstream_neuron_id upstream_neuron_name weight downstream_neuron_id \\\n0 VFB_jrchjzxx LNd_R - 5813021192 25 VFB_jrchjthm \n\n downstream_neuron_name upstream_class \\\n0 DNp27_R - 1072063538 LNd neuron \n\n downstream_class \\\n0 descending neuron of the posterior brain DNp27 \n\n up_data_source up_accession \\\n0 neuprint_JRC_Hemibrain_1point1 5813021192 \n\n down_source down_accession \n0 neuprint_JRC_Hemibrain_1point1 1072063538 ",
- "text/html": "\n\n
\n \n \n | \n upstream_neuron_id | \n upstream_neuron_name | \n weight | \n downstream_neuron_id | \n downstream_neuron_name | \n upstream_class | \n downstream_class | \n up_data_source | \n up_accession | \n down_source | \n down_accession | \n
\n \n \n \n 0 | \n VFB_jrchjzxx | \n LNd_R - 5813021192 | \n 25 | \n VFB_jrchjthm | \n DNp27_R - 1072063538 | \n LNd neuron | \n descending neuron of the posterior brain DNp27 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813021192 | \n neuprint_JRC_Hemibrain_1point1 | \n 1072063538 | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " upstream_neuron_id | \n",
+ " upstream_neuron_name | \n",
+ " weight | \n",
+ " downstream_neuron_id | \n",
+ " downstream_neuron_name | \n",
+ " upstream_class | \n",
+ " downstream_class | \n",
+ " up_data_source | \n",
+ " up_accession | \n",
+ " down_source | \n",
+ " down_accession | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " VFB_jrchjzxx | \n",
+ " LNd_R (FlyEM-HB:5813021192) | \n",
+ " 25 | \n",
+ " VFB_jrchjthm | \n",
+ " DNp27_R (FlyEM-HB:1072063538) | \n",
+ " LNd neuron | \n",
+ " descending neuron of the posterior brain DNp27 | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " upstream_neuron_id upstream_neuron_name weight \\\n",
+ "0 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) 25 \n",
+ "\n",
+ " downstream_neuron_id downstream_neuron_name upstream_class \\\n",
+ "0 VFB_jrchjthm DNp27_R (FlyEM-HB:1072063538) LNd neuron \n",
+ "\n",
+ " downstream_class up_data_source up_accession \\\n",
+ "0 descending neuron of the posterior brain DNp27 None None \n",
+ "\n",
+ " down_source down_accession \n",
+ "0 None None "
+ ]
},
- "metadata": {}
+ "execution_count": 9,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "vc.get_connected_neurons_by_type(upstream_type='LNd', downstream_type='adult descending neuron', weight=20)"
]
},
{
"cell_type": "code",
+ "execution_count": 10,
"metadata": {
- "tags": [],
"cell_id": "00014-4dfb6b71-235d-4a48-8c0d-9207aa900448",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "d785af5",
"execution_millis": 286,
"execution_start": 1614738379854,
- "deepnote_cell_type": "code"
+ "source_hash": "d785af5",
+ "tags": []
},
- "source": [
- "# Intra pacemaker neuron neuron connections\n",
- "\n",
- "vc.get_connected_neurons_by_type(upstream_type='pacemaker neuron', downstream_type='pacemaker neuron', weight=20)"
- ],
- "execution_count": null,
"outputs": [
{
- "output_type": "execute_result",
- "execution_count": 13,
"data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 20,
- "column_count": 11,
- "columns": [
- {
- "name": "upstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 11,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchjzxy",
- "count": 3
- },
- {
- "name": "VFB_jrchjtf0",
- "count": 2
- },
- {
- "name": "9 others",
- "count": 15
- }
- ]
- }
- },
- {
- "name": "upstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 11,
- "nan_count": 0,
- "categories": [
- {
- "name": "LNd_R - 5813069648",
- "count": 3
- },
- {
- "name": "DN1pA_R - 324846570",
- "count": 2
- },
- {
- "name": "9 others",
- "count": 15
- }
- ]
- }
- },
- {
- "name": "weight",
- "dtype": "int64",
- "stats": {
- "unique_count": 14,
- "nan_count": 0,
- "min": 21,
- "max": 79,
- "histogram": [
- {
- "bin_start": 21,
- "bin_end": 26.8,
- "count": 6
- },
- {
- "bin_start": 26.8,
- "bin_end": 32.6,
- "count": 4
- },
- {
- "bin_start": 32.6,
- "bin_end": 38.4,
- "count": 4
- },
- {
- "bin_start": 38.4,
- "bin_end": 44.2,
- "count": 2
- },
- {
- "bin_start": 44.2,
- "bin_end": 50,
- "count": 0
- },
- {
- "bin_start": 50,
- "bin_end": 55.8,
- "count": 1
- },
- {
- "bin_start": 55.8,
- "bin_end": 61.6,
- "count": 0
- },
- {
- "bin_start": 61.6,
- "bin_end": 67.4,
- "count": 1
- },
- {
- "bin_start": 67.4,
- "bin_end": 73.19999999999999,
- "count": 0
- },
- {
- "bin_start": 73.19999999999999,
- "bin_end": 79,
- "count": 2
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchk8e0",
- "count": 8
- },
- {
- "name": "VFB_jrchjzxy",
- "count": 7
- },
- {
- "name": "4 others",
- "count": 5
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "5th s-LNv - 511051477",
- "count": 8
- },
- {
- "name": "LNd_R - 5813069648",
- "count": 7
- },
- {
- "name": "4 others",
- "count": 5
- }
- ]
- }
- },
- {
- "name": "upstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 5,
- "nan_count": 0,
- "categories": [
- {
- "name": "DN1p neuron",
- "count": 9
- },
- {
- "name": "DN1a neuron",
- "count": 4
- },
- {
- "name": "3 others",
- "count": 7
- }
- ]
- }
- },
- {
- "name": "downstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 3,
- "nan_count": 0,
- "categories": [
- {
- "name": "LNd neuron",
- "count": 10
- },
- {
- "name": "s-LNv neuron",
- "count": 8
- },
- {
- "name": "LP neuron",
- "count": 2
- }
- ]
- }
- },
- {
- "name": "up_data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 20
- }
- ]
- }
- },
- {
- "name": "up_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 11,
- "nan_count": 0,
- "categories": [
- {
- "name": "5813069648",
- "count": 3
- },
- {
- "name": "324846570",
- "count": 2
- },
- {
- "name": "9 others",
- "count": 15
- }
- ]
- }
- },
- {
- "name": "down_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 20
- }
- ]
- }
- },
- {
- "name": "down_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 6,
- "nan_count": 0,
- "categories": [
- {
- "name": "511051477",
- "count": 8
- },
- {
- "name": "5813069648",
- "count": 7
- },
- {
- "name": "4 others",
- "count": 5
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "upstream_neuron_id": "VFB_jrchjzxy",
- "upstream_neuron_name": "LNd_R - 5813069648",
- "weight": 37,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "LNd neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813069648",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 0
- },
- {
- "upstream_neuron_id": "VFB_jrchk089",
- "upstream_neuron_name": "LPN_R - 480029788",
- "weight": 43,
- "downstream_neuron_id": "VFB_jrchk08a",
- "downstream_neuron_name": "LPN_R - 450034902",
- "upstream_class": "LP neuron",
- "downstream_class": "LP neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "480029788",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "450034902",
- "_deepnote_index_column": 1
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf0",
- "upstream_neuron_name": "DN1pA_R - 324846570",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1p neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "324846570",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 2
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf0",
- "upstream_neuron_name": "DN1pA_R - 324846570",
- "weight": 37,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1p neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "324846570",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 3
- },
- {
- "upstream_neuron_id": "VFB_jrchk8e0",
- "upstream_neuron_name": "5th s-LNv - 511051477",
- "weight": 40,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "s-LNv neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "511051477",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 4
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf3",
- "upstream_neuron_name": "DN1pA_R - 387166379",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1p neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "387166379",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 5
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf1",
- "upstream_neuron_name": "DN1pA_R - 325529237",
- "weight": 30,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1p neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "325529237",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 6
- },
- {
- "upstream_neuron_id": "VFB_jrchk8e0",
- "upstream_neuron_name": "5th s-LNv - 511051477",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjzxx",
- "downstream_neuron_name": "LNd_R - 5813021192",
- "upstream_class": "s-LNv neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "511051477",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813021192",
- "_deepnote_index_column": 7
- },
- {
- "upstream_neuron_id": "VFB_jrchjtez",
- "upstream_neuron_name": "DN1pA_R - 5813010153",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1p neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813010153",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 8
- },
- {
- "upstream_neuron_id": "VFB_jrchjzxy",
- "upstream_neuron_name": "LNd_R - 5813069648",
- "weight": 29,
- "downstream_neuron_id": "VFB_jrchjzxw",
- "downstream_neuron_name": "LNd_R - 5813056917",
- "upstream_class": "LNd neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813069648",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813056917",
- "_deepnote_index_column": 9
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf2",
- "upstream_neuron_name": "DN1pA_R - 387944118",
- "weight": 22,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1p neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "387944118",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 10
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf2",
- "upstream_neuron_name": "DN1pA_R - 387944118",
- "weight": 34,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1p neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "387944118",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 11
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf1",
- "upstream_neuron_name": "DN1pA_R - 325529237",
- "weight": 33,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1p neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "325529237",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 12
- },
- {
- "upstream_neuron_id": "VFB_jrchk08a",
- "upstream_neuron_name": "LPN_R - 450034902",
- "weight": 30,
- "downstream_neuron_id": "VFB_jrchk089",
- "downstream_neuron_name": "LPN_R - 480029788",
- "upstream_class": "LP neuron",
- "downstream_class": "LP neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "450034902",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "480029788",
- "_deepnote_index_column": 13
- },
- {
- "upstream_neuron_id": "VFB_jrchjtey",
- "upstream_neuron_name": "DN1a_R - 5813022274",
- "weight": 63,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1a neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813022274",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 14
- },
- {
- "upstream_neuron_id": "VFB_jrchjtex",
- "upstream_neuron_name": "DN1a_R - 264083994",
- "weight": 55,
- "downstream_neuron_id": "VFB_jrchk8e0",
- "downstream_neuron_name": "5th s-LNv - 511051477",
- "upstream_class": "DN1a neuron",
- "downstream_class": "s-LNv neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "264083994",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "511051477",
- "_deepnote_index_column": 15
- },
- {
- "upstream_neuron_id": "VFB_jrchjtey",
- "upstream_neuron_name": "DN1a_R - 5813022274",
- "weight": 75,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1a neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813022274",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 16
- },
- {
- "upstream_neuron_id": "VFB_jrchjtex",
- "upstream_neuron_name": "DN1a_R - 264083994",
- "weight": 79,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1a neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "264083994",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 17
- },
- {
- "upstream_neuron_id": "VFB_jrchjtf3",
- "upstream_neuron_name": "DN1pA_R - 387166379",
- "weight": 30,
- "downstream_neuron_id": "VFB_jrchjzxy",
- "downstream_neuron_name": "LNd_R - 5813069648",
- "upstream_class": "DN1p neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "387166379",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813069648",
- "_deepnote_index_column": 18
- },
- {
- "upstream_neuron_id": "VFB_jrchjzxy",
- "upstream_neuron_name": "LNd_R - 5813069648",
- "weight": 21,
- "downstream_neuron_id": "VFB_jrchjzxx",
- "downstream_neuron_name": "LNd_R - 5813021192",
- "upstream_class": "LNd neuron",
- "downstream_class": "LNd neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813069648",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "5813021192",
- "_deepnote_index_column": 19
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " upstream_neuron_id upstream_neuron_name weight downstream_neuron_id \\\n0 VFB_jrchjzxy LNd_R - 5813069648 37 VFB_jrchk8e0 \n1 VFB_jrchk089 LPN_R - 480029788 43 VFB_jrchk08a \n2 VFB_jrchjtf0 DN1pA_R - 324846570 25 VFB_jrchk8e0 \n3 VFB_jrchjtf0 DN1pA_R - 324846570 37 VFB_jrchjzxy \n4 VFB_jrchk8e0 5th s-LNv - 511051477 40 VFB_jrchjzxy \n5 VFB_jrchjtf3 DN1pA_R - 387166379 25 VFB_jrchk8e0 \n6 VFB_jrchjtf1 DN1pA_R - 325529237 30 VFB_jrchjzxy \n7 VFB_jrchk8e0 5th s-LNv - 511051477 25 VFB_jrchjzxx \n8 VFB_jrchjtez DN1pA_R - 5813010153 25 VFB_jrchk8e0 \n9 VFB_jrchjzxy LNd_R - 5813069648 29 VFB_jrchjzxw \n10 VFB_jrchjtf2 DN1pA_R - 387944118 22 VFB_jrchk8e0 \n11 VFB_jrchjtf2 DN1pA_R - 387944118 34 VFB_jrchjzxy \n12 VFB_jrchjtf1 DN1pA_R - 325529237 33 VFB_jrchk8e0 \n13 VFB_jrchk08a LPN_R - 450034902 30 VFB_jrchk089 \n14 VFB_jrchjtey DN1a_R - 5813022274 63 VFB_jrchk8e0 \n15 VFB_jrchjtex DN1a_R - 264083994 55 VFB_jrchk8e0 \n16 VFB_jrchjtey DN1a_R - 5813022274 75 VFB_jrchjzxy \n17 VFB_jrchjtex DN1a_R - 264083994 79 VFB_jrchjzxy \n18 VFB_jrchjtf3 DN1pA_R - 387166379 30 VFB_jrchjzxy \n19 VFB_jrchjzxy LNd_R - 5813069648 21 VFB_jrchjzxx \n\n downstream_neuron_name upstream_class downstream_class \\\n0 5th s-LNv - 511051477 LNd neuron s-LNv neuron \n1 LPN_R - 450034902 LP neuron LP neuron \n2 5th s-LNv - 511051477 DN1p neuron s-LNv neuron \n3 LNd_R - 5813069648 DN1p neuron LNd neuron \n4 LNd_R - 5813069648 s-LNv neuron LNd neuron \n5 5th s-LNv - 511051477 DN1p neuron s-LNv neuron \n6 LNd_R - 5813069648 DN1p neuron LNd neuron \n7 LNd_R - 5813021192 s-LNv neuron LNd neuron \n8 5th s-LNv - 511051477 DN1p neuron s-LNv neuron \n9 LNd_R - 5813056917 LNd neuron LNd neuron \n10 5th s-LNv - 511051477 DN1p neuron s-LNv neuron \n11 LNd_R - 5813069648 DN1p neuron LNd neuron \n12 5th s-LNv - 511051477 DN1p neuron s-LNv neuron \n13 LPN_R - 480029788 LP neuron LP neuron \n14 5th s-LNv - 511051477 DN1a neuron s-LNv neuron \n15 5th s-LNv - 511051477 DN1a neuron s-LNv neuron \n16 LNd_R - 5813069648 DN1a neuron LNd neuron \n17 LNd_R - 5813069648 DN1a neuron LNd neuron \n18 LNd_R - 5813069648 DN1p neuron LNd neuron \n19 LNd_R - 5813021192 LNd neuron LNd neuron \n\n up_data_source up_accession \\\n0 neuprint_JRC_Hemibrain_1point1 5813069648 \n1 neuprint_JRC_Hemibrain_1point1 480029788 \n2 neuprint_JRC_Hemibrain_1point1 324846570 \n3 neuprint_JRC_Hemibrain_1point1 324846570 \n4 neuprint_JRC_Hemibrain_1point1 511051477 \n5 neuprint_JRC_Hemibrain_1point1 387166379 \n6 neuprint_JRC_Hemibrain_1point1 325529237 \n7 neuprint_JRC_Hemibrain_1point1 511051477 \n8 neuprint_JRC_Hemibrain_1point1 5813010153 \n9 neuprint_JRC_Hemibrain_1point1 5813069648 \n10 neuprint_JRC_Hemibrain_1point1 387944118 \n11 neuprint_JRC_Hemibrain_1point1 387944118 \n12 neuprint_JRC_Hemibrain_1point1 325529237 \n13 neuprint_JRC_Hemibrain_1point1 450034902 \n14 neuprint_JRC_Hemibrain_1point1 5813022274 \n15 neuprint_JRC_Hemibrain_1point1 264083994 \n16 neuprint_JRC_Hemibrain_1point1 5813022274 \n17 neuprint_JRC_Hemibrain_1point1 264083994 \n18 neuprint_JRC_Hemibrain_1point1 387166379 \n19 neuprint_JRC_Hemibrain_1point1 5813069648 \n\n down_source down_accession \n0 neuprint_JRC_Hemibrain_1point1 511051477 \n1 neuprint_JRC_Hemibrain_1point1 450034902 \n2 neuprint_JRC_Hemibrain_1point1 511051477 \n3 neuprint_JRC_Hemibrain_1point1 5813069648 \n4 neuprint_JRC_Hemibrain_1point1 5813069648 \n5 neuprint_JRC_Hemibrain_1point1 511051477 \n6 neuprint_JRC_Hemibrain_1point1 5813069648 \n7 neuprint_JRC_Hemibrain_1point1 5813021192 \n8 neuprint_JRC_Hemibrain_1point1 511051477 \n9 neuprint_JRC_Hemibrain_1point1 5813056917 \n10 neuprint_JRC_Hemibrain_1point1 511051477 \n11 neuprint_JRC_Hemibrain_1point1 5813069648 \n12 neuprint_JRC_Hemibrain_1point1 511051477 \n13 neuprint_JRC_Hemibrain_1point1 480029788 \n14 neuprint_JRC_Hemibrain_1point1 511051477 \n15 neuprint_JRC_Hemibrain_1point1 511051477 \n16 neuprint_JRC_Hemibrain_1point1 5813069648 \n17 neuprint_JRC_Hemibrain_1point1 5813069648 \n18 neuprint_JRC_Hemibrain_1point1 5813069648 \n19 neuprint_JRC_Hemibrain_1point1 5813021192 ",
- "text/html": "\n\n
\n \n \n | \n upstream_neuron_id | \n upstream_neuron_name | \n weight | \n downstream_neuron_id | \n downstream_neuron_name | \n upstream_class | \n downstream_class | \n up_data_source | \n up_accession | \n down_source | \n down_accession | \n
\n \n \n \n 0 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n 37 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n LNd neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 1 | \n VFB_jrchk089 | \n LPN_R - 480029788 | \n 43 | \n VFB_jrchk08a | \n LPN_R - 450034902 | \n LP neuron | \n LP neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 480029788 | \n neuprint_JRC_Hemibrain_1point1 | \n 450034902 | \n
\n \n 2 | \n VFB_jrchjtf0 | \n DN1pA_R - 324846570 | \n 25 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1p neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 324846570 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 3 | \n VFB_jrchjtf0 | \n DN1pA_R - 324846570 | \n 37 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1p neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 324846570 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 4 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n 40 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n s-LNv neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 5 | \n VFB_jrchjtf3 | \n DN1pA_R - 387166379 | \n 25 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1p neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 387166379 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 6 | \n VFB_jrchjtf1 | \n DN1pA_R - 325529237 | \n 30 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1p neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 325529237 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 7 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n 25 | \n VFB_jrchjzxx | \n LNd_R - 5813021192 | \n s-LNv neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813021192 | \n
\n \n 8 | \n VFB_jrchjtez | \n DN1pA_R - 5813010153 | \n 25 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1p neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813010153 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 9 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n 29 | \n VFB_jrchjzxw | \n LNd_R - 5813056917 | \n LNd neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813056917 | \n
\n \n 10 | \n VFB_jrchjtf2 | \n DN1pA_R - 387944118 | \n 22 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1p neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 387944118 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 11 | \n VFB_jrchjtf2 | \n DN1pA_R - 387944118 | \n 34 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1p neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 387944118 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 12 | \n VFB_jrchjtf1 | \n DN1pA_R - 325529237 | \n 33 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1p neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 325529237 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 13 | \n VFB_jrchk08a | \n LPN_R - 450034902 | \n 30 | \n VFB_jrchk089 | \n LPN_R - 480029788 | \n LP neuron | \n LP neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 450034902 | \n neuprint_JRC_Hemibrain_1point1 | \n 480029788 | \n
\n \n 14 | \n VFB_jrchjtey | \n DN1a_R - 5813022274 | \n 63 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1a neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813022274 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 15 | \n VFB_jrchjtex | \n DN1a_R - 264083994 | \n 55 | \n VFB_jrchk8e0 | \n 5th s-LNv - 511051477 | \n DN1a neuron | \n s-LNv neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 264083994 | \n neuprint_JRC_Hemibrain_1point1 | \n 511051477 | \n
\n \n 16 | \n VFB_jrchjtey | \n DN1a_R - 5813022274 | \n 75 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1a neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813022274 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 17 | \n VFB_jrchjtex | \n DN1a_R - 264083994 | \n 79 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1a neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 264083994 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 18 | \n VFB_jrchjtf3 | \n DN1pA_R - 387166379 | \n 30 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n DN1p neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 387166379 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n
\n \n 19 | \n VFB_jrchjzxy | \n LNd_R - 5813069648 | \n 21 | \n VFB_jrchjzxx | \n LNd_R - 5813021192 | \n LNd neuron | \n LNd neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813069648 | \n neuprint_JRC_Hemibrain_1point1 | \n 5813021192 | \n
\n \n
\n
"
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " upstream_neuron_id | \n",
+ " upstream_neuron_name | \n",
+ " weight | \n",
+ " downstream_neuron_id | \n",
+ " downstream_neuron_name | \n",
+ " upstream_class | \n",
+ " downstream_class | \n",
+ " up_data_source | \n",
+ " up_accession | \n",
+ " down_source | \n",
+ " down_accession | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " VFB_jrchk089 | \n",
+ " LPN_R (FlyEM-HB:480029788) | \n",
+ " 43 | \n",
+ " VFB_jrchk08a | \n",
+ " LPN_R (FlyEM-HB:450034902) | \n",
+ " LP neuron | \n",
+ " LP neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " VFB_jrchk08a | \n",
+ " LPN_R (FlyEM-HB:450034902) | \n",
+ " 30 | \n",
+ " VFB_jrchk089 | \n",
+ " LPN_R (FlyEM-HB:480029788) | \n",
+ " LP neuron | \n",
+ " LP neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 2 | \n",
+ " VFB_jrchjtf3 | \n",
+ " DN1pA_R (FlyEM-HB:387166379) | \n",
+ " 30 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1p neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 3 | \n",
+ " VFB_jrchjtf1 | \n",
+ " DN1pA_R (FlyEM-HB:325529237) | \n",
+ " 30 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1p neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 4 | \n",
+ " VFB_jrchjtey | \n",
+ " DN1a_R (FlyEM-HB:5813022274) | \n",
+ " 75 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1a neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 5 | \n",
+ " VFB_jrchjtex | \n",
+ " DN1a_R (FlyEM-HB:264083994) | \n",
+ " 79 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1a neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 6 | \n",
+ " VFB_jrchjtf2 | \n",
+ " DN1pA_R (FlyEM-HB:387944118) | \n",
+ " 34 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1p neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 7 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " 40 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " s-LNv neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 8 | \n",
+ " VFB_jrchjtf0 | \n",
+ " DN1pA_R (FlyEM-HB:324846570) | \n",
+ " 37 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " DN1p neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 9 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " 29 | \n",
+ " VFB_jrchjzxw | \n",
+ " LNd_R (FlyEM-HB:5813056917) | \n",
+ " LNd neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 10 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " 21 | \n",
+ " VFB_jrchjzxx | \n",
+ " LNd_R (FlyEM-HB:5813021192) | \n",
+ " LNd neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 11 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " 25 | \n",
+ " VFB_jrchjzxx | \n",
+ " LNd_R (FlyEM-HB:5813021192) | \n",
+ " s-LNv neuron | \n",
+ " LNd neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 12 | \n",
+ " VFB_jrchjtf2 | \n",
+ " DN1pA_R (FlyEM-HB:387944118) | \n",
+ " 22 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1p neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 13 | \n",
+ " VFB_jrchjtez | \n",
+ " DN1pA_R (FlyEM-HB:5813010153) | \n",
+ " 25 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1p neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 14 | \n",
+ " VFB_jrchjtex | \n",
+ " DN1a_R (FlyEM-HB:264083994) | \n",
+ " 55 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1a neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 15 | \n",
+ " VFB_jrchjtf3 | \n",
+ " DN1pA_R (FlyEM-HB:387166379) | \n",
+ " 25 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1p neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 16 | \n",
+ " VFB_jrchjtf0 | \n",
+ " DN1pA_R (FlyEM-HB:324846570) | \n",
+ " 25 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1p neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 17 | \n",
+ " VFB_jrchjzxy | \n",
+ " LNd_R (FlyEM-HB:5813069648) | \n",
+ " 37 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " LNd neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 18 | \n",
+ " VFB_jrchjtey | \n",
+ " DN1a_R (FlyEM-HB:5813022274) | \n",
+ " 63 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1a neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 19 | \n",
+ " VFB_jrchjtf1 | \n",
+ " DN1pA_R (FlyEM-HB:325529237) | \n",
+ " 33 | \n",
+ " VFB_jrchk8e0 | \n",
+ " 5th s-LNv (FlyEM-HB:511051477) | \n",
+ " DN1p neuron | \n",
+ " s-LNv neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
"
+ ],
+ "text/plain": [
+ " upstream_neuron_id upstream_neuron_name weight \\\n",
+ "0 VFB_jrchk089 LPN_R (FlyEM-HB:480029788) 43 \n",
+ "1 VFB_jrchk08a LPN_R (FlyEM-HB:450034902) 30 \n",
+ "2 VFB_jrchjtf3 DN1pA_R (FlyEM-HB:387166379) 30 \n",
+ "3 VFB_jrchjtf1 DN1pA_R (FlyEM-HB:325529237) 30 \n",
+ "4 VFB_jrchjtey DN1a_R (FlyEM-HB:5813022274) 75 \n",
+ "5 VFB_jrchjtex DN1a_R (FlyEM-HB:264083994) 79 \n",
+ "6 VFB_jrchjtf2 DN1pA_R (FlyEM-HB:387944118) 34 \n",
+ "7 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) 40 \n",
+ "8 VFB_jrchjtf0 DN1pA_R (FlyEM-HB:324846570) 37 \n",
+ "9 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 29 \n",
+ "10 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 21 \n",
+ "11 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) 25 \n",
+ "12 VFB_jrchjtf2 DN1pA_R (FlyEM-HB:387944118) 22 \n",
+ "13 VFB_jrchjtez DN1pA_R (FlyEM-HB:5813010153) 25 \n",
+ "14 VFB_jrchjtex DN1a_R (FlyEM-HB:264083994) 55 \n",
+ "15 VFB_jrchjtf3 DN1pA_R (FlyEM-HB:387166379) 25 \n",
+ "16 VFB_jrchjtf0 DN1pA_R (FlyEM-HB:324846570) 25 \n",
+ "17 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 37 \n",
+ "18 VFB_jrchjtey DN1a_R (FlyEM-HB:5813022274) 63 \n",
+ "19 VFB_jrchjtf1 DN1pA_R (FlyEM-HB:325529237) 33 \n",
+ "\n",
+ " downstream_neuron_id downstream_neuron_name upstream_class \\\n",
+ "0 VFB_jrchk08a LPN_R (FlyEM-HB:450034902) LP neuron \n",
+ "1 VFB_jrchk089 LPN_R (FlyEM-HB:480029788) LP neuron \n",
+ "2 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1p neuron \n",
+ "3 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1p neuron \n",
+ "4 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1a neuron \n",
+ "5 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1a neuron \n",
+ "6 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1p neuron \n",
+ "7 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) s-LNv neuron \n",
+ "8 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) DN1p neuron \n",
+ "9 VFB_jrchjzxw LNd_R (FlyEM-HB:5813056917) LNd neuron \n",
+ "10 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) LNd neuron \n",
+ "11 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) s-LNv neuron \n",
+ "12 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1p neuron \n",
+ "13 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1p neuron \n",
+ "14 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1a neuron \n",
+ "15 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1p neuron \n",
+ "16 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1p neuron \n",
+ "17 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) LNd neuron \n",
+ "18 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1a neuron \n",
+ "19 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) DN1p neuron \n",
+ "\n",
+ " downstream_class up_data_source up_accession down_source down_accession \n",
+ "0 LP neuron None None None None \n",
+ "1 LP neuron None None None None \n",
+ "2 LNd neuron None None None None \n",
+ "3 LNd neuron None None None None \n",
+ "4 LNd neuron None None None None \n",
+ "5 LNd neuron None None None None \n",
+ "6 LNd neuron None None None None \n",
+ "7 LNd neuron None None None None \n",
+ "8 LNd neuron None None None None \n",
+ "9 LNd neuron None None None None \n",
+ "10 LNd neuron None None None None \n",
+ "11 LNd neuron None None None None \n",
+ "12 s-LNv neuron None None None None \n",
+ "13 s-LNv neuron None None None None \n",
+ "14 s-LNv neuron None None None None \n",
+ "15 s-LNv neuron None None None None \n",
+ "16 s-LNv neuron None None None None \n",
+ "17 s-LNv neuron None None None None \n",
+ "18 s-LNv neuron None None None None \n",
+ "19 s-LNv neuron None None None None "
+ ]
},
- "metadata": {}
+ "execution_count": 10,
+ "metadata": {},
+ "output_type": "execute_result"
}
+ ],
+ "source": [
+ "# Intra pacemaker neuron neuron connections\n",
+ "\n",
+ "vc.get_connected_neurons_by_type(upstream_type='pacemaker neuron', downstream_type='pacemaker neuron', weight=20)"
]
},
{
"cell_type": "code",
+ "execution_count": 11,
"metadata": {
- "tags": [],
"cell_id": "00014-805b86fa-55b8-4d49-a340-595932ba0c9a",
+ "deepnote_cell_type": "code",
"deepnote_to_be_reexecuted": false,
- "source_hash": "6ba8826f",
"execution_millis": 80982,
"execution_start": 1614738620354,
- "deepnote_cell_type": "code"
+ "source_hash": "6ba8826f",
+ "tags": []
},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " upstream_neuron_id | \n",
+ " upstream_neuron_name | \n",
+ " weight | \n",
+ " downstream_neuron_id | \n",
+ " downstream_neuron_name | \n",
+ " upstream_class | \n",
+ " downstream_class | \n",
+ " up_data_source | \n",
+ " up_accession | \n",
+ " down_source | \n",
+ " down_accession | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " 0 | \n",
+ " VFB_jrchk5qg | \n",
+ " SLP244_R (FlyEM-HB:297533212) | \n",
+ " 33 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " adult superior lateral protocerebrum neuron 244 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 1 | \n",
+ " VFB_jrchk5qf | \n",
+ " SLP244_R (FlyEM-HB:298214577) | \n",
+ " 27 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " adult superior lateral protocerebrum neuron 244 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 2 | \n",
+ " VFB_jrchjyu7 | \n",
+ " LHAV3j1_R (FlyEM-HB:297851977) | \n",
+ " 24 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " adult lateral horn AV3j1 neuron | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 3 | \n",
+ " VFB_jrchk64p | \n",
+ " SMP001_R (FlyEM-HB:5813056887) | \n",
+ " 22 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " adult superior medial protocerebrum neuron 001 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 4 | \n",
+ " VFB_jrchk0fd | \n",
+ " MBON23(a2sp)_R (FlyEM-HB:423382015) | \n",
+ " 21 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " mushroom body output neuron 23 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ " ... | \n",
+ "
\n",
+ " \n",
+ " 56 | \n",
+ " VFB_jrchjti6 | \n",
+ " DSKMP3_R (FlyEM-HB:327937328) | \n",
+ " 39 | \n",
+ " VFB_jrchjti4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " adult Drosulfakinin neuron | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 57 | \n",
+ " VFB_jrchk8dv | \n",
+ " pC1c_R (FlyEM-HB:267551639) | \n",
+ " 84 | \n",
+ " VFB_jrchjti4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " adult doublesex pC1 (female) neuron | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 58 | \n",
+ " VFB_jrchk5jv | \n",
+ " SLP152_R (FlyEM-HB:487812620) | \n",
+ " 28 | \n",
+ " VFB_jrchjti4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " adult superior lateral protocerebrum neuron 152 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 59 | \n",
+ " VFB_jrchk5eo | \n",
+ " SLP066_R (FlyEM-HB:327843160) | \n",
+ " 42 | \n",
+ " VFB_jrchjti4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " adult superior lateral protocerebrum neuron 066 | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ " 60 | \n",
+ " VFB_jrchjti7 | \n",
+ " DSKMP3_R (FlyEM-HB:328559607) | \n",
+ " 53 | \n",
+ " VFB_jrchjti4 | \n",
+ " DSKMP1B_R (FlyEM-HB:1352077058) | \n",
+ " adult Drosulfakinin neuron | \n",
+ " adult Drosulfakinin neuron | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ " None | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
61 rows × 11 columns
\n",
+ "
"
+ ],
+ "text/plain": [
+ " upstream_neuron_id upstream_neuron_name weight \\\n",
+ "0 VFB_jrchk5qg SLP244_R (FlyEM-HB:297533212) 33 \n",
+ "1 VFB_jrchk5qf SLP244_R (FlyEM-HB:298214577) 27 \n",
+ "2 VFB_jrchjyu7 LHAV3j1_R (FlyEM-HB:297851977) 24 \n",
+ "3 VFB_jrchk64p SMP001_R (FlyEM-HB:5813056887) 22 \n",
+ "4 VFB_jrchk0fd MBON23(a2sp)_R (FlyEM-HB:423382015) 21 \n",
+ ".. ... ... ... \n",
+ "56 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) 39 \n",
+ "57 VFB_jrchk8dv pC1c_R (FlyEM-HB:267551639) 84 \n",
+ "58 VFB_jrchk5jv SLP152_R (FlyEM-HB:487812620) 28 \n",
+ "59 VFB_jrchk5eo SLP066_R (FlyEM-HB:327843160) 42 \n",
+ "60 VFB_jrchjti7 DSKMP3_R (FlyEM-HB:328559607) 53 \n",
+ "\n",
+ " downstream_neuron_id downstream_neuron_name \\\n",
+ "0 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n",
+ "1 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n",
+ "2 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n",
+ "3 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n",
+ "4 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n",
+ ".. ... ... \n",
+ "56 VFB_jrchjti4 DSKMP1B_R (FlyEM-HB:1352077058) \n",
+ "57 VFB_jrchjti4 DSKMP1B_R (FlyEM-HB:1352077058) \n",
+ "58 VFB_jrchjti4 DSKMP1B_R (FlyEM-HB:1352077058) \n",
+ "59 VFB_jrchjti4 DSKMP1B_R (FlyEM-HB:1352077058) \n",
+ "60 VFB_jrchjti4 DSKMP1B_R (FlyEM-HB:1352077058) \n",
+ "\n",
+ " upstream_class \\\n",
+ "0 adult superior lateral protocerebrum neuron 244 \n",
+ "1 adult superior lateral protocerebrum neuron 244 \n",
+ "2 adult lateral horn AV3j1 neuron \n",
+ "3 adult superior medial protocerebrum neuron 001 \n",
+ "4 mushroom body output neuron 23 \n",
+ ".. ... \n",
+ "56 adult Drosulfakinin neuron \n",
+ "57 adult doublesex pC1 (female) neuron \n",
+ "58 adult superior lateral protocerebrum neuron 152 \n",
+ "59 adult superior lateral protocerebrum neuron 066 \n",
+ "60 adult Drosulfakinin neuron \n",
+ "\n",
+ " downstream_class up_data_source up_accession down_source \\\n",
+ "0 adult Drosulfakinin neuron None None None \n",
+ "1 adult Drosulfakinin neuron None None None \n",
+ "2 adult Drosulfakinin neuron None None None \n",
+ "3 adult Drosulfakinin neuron None None None \n",
+ "4 adult Drosulfakinin neuron None None None \n",
+ ".. ... ... ... ... \n",
+ "56 adult Drosulfakinin neuron None None None \n",
+ "57 adult Drosulfakinin neuron None None None \n",
+ "58 adult Drosulfakinin neuron None None None \n",
+ "59 adult Drosulfakinin neuron None None None \n",
+ "60 adult Drosulfakinin neuron None None None \n",
+ "\n",
+ " down_accession \n",
+ "0 None \n",
+ "1 None \n",
+ "2 None \n",
+ "3 None \n",
+ "4 None \n",
+ ".. ... \n",
+ "56 None \n",
+ "57 None \n",
+ "58 None \n",
+ "59 None \n",
+ "60 None \n",
+ "\n",
+ "[61 rows x 11 columns]"
+ ]
+ },
+ "execution_count": 11,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
"source": [
"\n",
"vc.get_connected_neurons_by_type(upstream_type='adult neuron', downstream_type='adult Drosulfakinin neuron', weight=20)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Transcriptomics Queries\n",
+ "\n",
+ "# Finding single cell transcriptomics data for a given cell type"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " cell_type cell_type_id sample_sex \\\n",
+ "0 adult antennal olfactory receptor neuron FBbt_00007352 female organism \n",
+ "1 adult antennal olfactory receptor neuron FBbt_00007352 male organism \n",
+ "2 adult antennal olfactory receptor neuron FBbt_00007352 None \n",
+ "3 adult antennal olfactory receptor neuron FBbt_00007352 None \n",
+ "4 adult antennal olfactory receptor neuron FBbt_00007352 male organism \n",
+ "\n",
+ " sample_tissue \\\n",
+ "0 [antenna, adult tracheal system, wing, haltere... \n",
+ "1 [adult head, adult, wing, proboscis, testis, m... \n",
+ "2 [leg, adult, adult fat body, adult abdomen, ad... \n",
+ "3 [leg, adult, adult fat body, adult abdomen, ad... \n",
+ "4 [adult head, adult, wing, proboscis, testis, m... \n",
+ "\n",
+ " ref gene gene_id \\\n",
+ "0 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n",
+ "1 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n",
+ "2 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n",
+ "3 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ζ FBgn0004907 \n",
+ "4 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ζ FBgn0004907 \n",
+ "\n",
+ " function extent level \n",
+ "0 [] 0.609756 1395.2687 \n",
+ "1 [] 0.625000 1317.0752 \n",
+ "2 [] 0.618605 1340.0747 \n",
+ "3 [] 0.709302 1613.5887 \n",
+ "4 [] 0.640625 1561.3594 \n"
+ ]
+ }
],
- "execution_count": null,
+ "source": [
+ "\n",
+ "profile = vc.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron')\n",
+ "print(profile.head())"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "These results can be filtered by gene function - first find available gene functions"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 13,
+ "metadata": {},
"outputs": [
{
- "output_type": "execute_result",
- "execution_count": 14,
- "data": {
- "application/vnd.deepnote.dataframe.v2+json": {
- "row_count": 61,
- "column_count": 11,
- "columns": [
- {
- "name": "upstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 52,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchk5ch",
- "count": 4
- },
- {
- "name": "VFB_jrchjz3e",
- "count": 2
- },
- {
- "name": "50 others",
- "count": 55
- }
- ]
- }
- },
- {
- "name": "upstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 52,
- "nan_count": 0,
- "categories": [
- {
- "name": "SLP031_R - 5813026615",
- "count": 4
- },
- {
- "name": "LHAV6h1_R - 672960748",
- "count": 2
- },
- {
- "name": "50 others",
- "count": 55
- }
- ]
- }
- },
- {
- "name": "weight",
- "dtype": "int64",
- "stats": {
- "unique_count": 30,
- "nan_count": 0,
- "min": 20,
- "max": 124,
- "histogram": [
- {
- "bin_start": 20,
- "bin_end": 30.4,
- "count": 40
- },
- {
- "bin_start": 30.4,
- "bin_end": 40.8,
- "count": 4
- },
- {
- "bin_start": 40.8,
- "bin_end": 51.2,
- "count": 4
- },
- {
- "bin_start": 51.2,
- "bin_end": 61.6,
- "count": 4
- },
- {
- "bin_start": 61.6,
- "bin_end": 72,
- "count": 1
- },
- {
- "bin_start": 72,
- "bin_end": 82.4,
- "count": 2
- },
- {
- "bin_start": 82.4,
- "bin_end": 92.8,
- "count": 3
- },
- {
- "bin_start": 92.8,
- "bin_end": 103.2,
- "count": 1
- },
- {
- "bin_start": 103.2,
- "bin_end": 113.60000000000001,
- "count": 1
- },
- {
- "bin_start": 113.60000000000001,
- "bin_end": 124,
- "count": 1
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_id",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "VFB_jrchjti4",
- "count": 21
- },
- {
- "name": "VFB_jrchjti2",
- "count": 21
- },
- {
- "name": "2 others",
- "count": 19
- }
- ]
- }
- },
- {
- "name": "downstream_neuron_name",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "DSKMP1B_R - 1352077058",
- "count": 21
- },
- {
- "name": "DSKMP1A_R - 1135837629",
- "count": 21
- },
- {
- "name": "2 others",
- "count": 19
- }
- ]
- }
- },
- {
- "name": "upstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 36,
- "nan_count": 0,
- "categories": [
- {
- "name": "adult neuron",
- "count": 11
- },
- {
- "name": "adult superior lateral protocerebrum neuron 031",
- "count": 4
- },
- {
- "name": "34 others",
- "count": 46
- }
- ]
- }
- },
- {
- "name": "downstream_class",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "adult Drosulfakinin neuron",
- "count": 61
- }
- ]
- }
- },
- {
- "name": "up_data_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 61
- }
- ]
- }
- },
- {
- "name": "up_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 52,
- "nan_count": 0,
- "categories": [
- {
- "name": "5813026615",
- "count": 4
- },
- {
- "name": "672960748",
- "count": 2
- },
- {
- "name": "50 others",
- "count": 55
- }
- ]
- }
- },
- {
- "name": "down_source",
- "dtype": "object",
- "stats": {
- "unique_count": 1,
- "nan_count": 0,
- "categories": [
- {
- "name": "neuprint_JRC_Hemibrain_1point1",
- "count": 61
- }
- ]
- }
- },
- {
- "name": "down_accession",
- "dtype": "object",
- "stats": {
- "unique_count": 4,
- "nan_count": 0,
- "categories": [
- {
- "name": "1352077058",
- "count": 21
- },
- {
- "name": "1135837629",
- "count": 21
- },
- {
- "name": "2 others",
- "count": 19
- }
- ]
- }
- },
- {
- "name": "_deepnote_index_column",
- "dtype": "int64"
- }
- ],
- "rows_top": [
- {
- "upstream_neuron_id": "VFB_jrchjsj3",
- "upstream_neuron_name": "AstA1_L - 362473525",
- "weight": 28,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "362473525",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 0
- },
- {
- "upstream_neuron_id": "VFB_jrchk5zh",
- "upstream_neuron_name": "SLP384_R - 482702027",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior lateral protocerebrum neuron 384",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "482702027",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 1
- },
- {
- "upstream_neuron_id": "VFB_jrchjrjn",
- "upstream_neuron_name": "AVLP001_R - 1321564092",
- "weight": 26,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 001",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1321564092",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 2
- },
- {
- "upstream_neuron_id": "VFB_jrchk5eo",
- "upstream_neuron_name": "SLP066_R - 327843160",
- "weight": 42,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 066",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "327843160",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 3
- },
- {
- "upstream_neuron_id": "VFB_jrchk5qf",
- "upstream_neuron_name": "SLP244_R - 298214577",
- "weight": 27,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior lateral protocerebrum neuron 244",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "298214577",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 4
- },
- {
- "upstream_neuron_id": "VFB_jrchjz3e",
- "upstream_neuron_name": "LHAV6h1_R - 672960748",
- "weight": 27,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "672960748",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 5
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ch",
- "upstream_neuron_name": "SLP031_R - 5813026615",
- "weight": 51,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult superior lateral protocerebrum neuron 031",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813026615",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 6
- },
- {
- "upstream_neuron_id": "VFB_jrchk4t2",
- "upstream_neuron_name": "PVLP083_R - 1260949362",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult posterior ventrolateral protocerebrum neuron 083",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1260949362",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 7
- },
- {
- "upstream_neuron_id": "VFB_jrchk746",
- "upstream_neuron_name": "SMP493(PDM17)_L - 762171741",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult superior medial protocerebrum neuron 493",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "762171741",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 8
- },
- {
- "upstream_neuron_id": "VFB_jrchk5pp",
- "upstream_neuron_name": "SLP230_R - 5813021535",
- "weight": 44,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 230",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813021535",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 9
- },
- {
- "upstream_neuron_id": "VFB_jrchjs2k",
- "upstream_neuron_name": "AVLP299_a_R - 2376180863",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 299",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "2376180863",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 10
- },
- {
- "upstream_neuron_id": "VFB_jrchjzec",
- "upstream_neuron_name": "LHPV4d2_R - 578155687",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult lateral horn PV4d2 neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "578155687",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 11
- },
- {
- "upstream_neuron_id": "VFB_jrchjrmu",
- "upstream_neuron_name": "AVLP053_R - 5813021533",
- "weight": 124,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 053",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813021533",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 12
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ci",
- "upstream_neuron_name": "SLP032_R - 388284324",
- "weight": 23,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult superior lateral protocerebrum neuron 032",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "388284324",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 13
- },
- {
- "upstream_neuron_id": "VFB_jrchjsi7",
- "upstream_neuron_name": "AVLP580_L - 1097642017",
- "weight": 91,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 580",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1097642017",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 14
- },
- {
- "upstream_neuron_id": "VFB_jrchjti6",
- "upstream_neuron_name": "DSKMP3_R - 327937328",
- "weight": 39,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult Drosulfakinin neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "327937328",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 15
- },
- {
- "upstream_neuron_id": "VFB_jrchjzeo",
- "upstream_neuron_name": "LHPV4d7_R - 821621397",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "821621397",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 16
- },
- {
- "upstream_neuron_id": "VFB_jrchjti7",
- "upstream_neuron_name": "DSKMP3_R - 328559607",
- "weight": 53,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult Drosulfakinin neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "328559607",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 17
- },
- {
- "upstream_neuron_id": "VFB_jrchjrxf",
- "upstream_neuron_name": "AVLP223_R - 1357088989",
- "weight": 23,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 223",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1357088989",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 18
- },
- {
- "upstream_neuron_id": "VFB_jrchjrmu",
- "upstream_neuron_name": "AVLP053_R - 5813021533",
- "weight": 59,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 053",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813021533",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 19
- },
- {
- "upstream_neuron_id": "VFB_jrchjs38",
- "upstream_neuron_name": "AVLP308_R - 950544340",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 308",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "950544340",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 20
- },
- {
- "upstream_neuron_id": "VFB_jrchjs4y",
- "upstream_neuron_name": "AVLP340_R - 1260949492",
- "weight": 29,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 340",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1260949492",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 21
- },
- {
- "upstream_neuron_id": "VFB_jrchjsj7",
- "upstream_neuron_name": "CL003_R - 549175510",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult clamp neuron 003",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "549175510",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 22
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ch",
- "upstream_neuron_name": "SLP031_R - 5813026615",
- "weight": 37,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 031",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813026615",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 23
- },
- {
- "upstream_neuron_id": "VFB_jrchjzeq",
- "upstream_neuron_name": "LHPV4d7_R - 821617263",
- "weight": 21,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "821617263",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 24
- },
- {
- "upstream_neuron_id": "VFB_jrchk64p",
- "upstream_neuron_name": "SMP001_R - 5813056887",
- "weight": 44,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult superior medial protocerebrum neuron 001",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813056887",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 25
- },
- {
- "upstream_neuron_id": "VFB_jrchjyu7",
- "upstream_neuron_name": "LHAV3j1_R - 297851977",
- "weight": 24,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "297851977",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 26
- },
- {
- "upstream_neuron_id": "VFB_jrchk0fd",
- "upstream_neuron_name": "MBON23(a2sp)_R - 423382015",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "mushroom body output neuron 23",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "423382015",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 27
- },
- {
- "upstream_neuron_id": "VFB_jrchk64p",
- "upstream_neuron_name": "SMP001_R - 5813056887",
- "weight": 22,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior medial protocerebrum neuron 001",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813056887",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 28
- },
- {
- "upstream_neuron_id": "VFB_jrchjz3e",
- "upstream_neuron_name": "LHAV6h1_R - 672960748",
- "weight": 21,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "672960748",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 29
- },
- {
- "upstream_neuron_id": "VFB_jrchk0xm",
- "upstream_neuron_name": "M_lvPNm45_R - 792023887",
- "weight": 24,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult multiglomerular antennal lobe projection neuron lvPN",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "792023887",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 30
- },
- {
- "upstream_neuron_id": "VFB_jrchjrlf",
- "upstream_neuron_name": "AVLP029_R - 580227374",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 029",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "580227374",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 31
- },
- {
- "upstream_neuron_id": "VFB_jrchk8dv",
- "upstream_neuron_name": "pC1c_R - 267551639",
- "weight": 84,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult doublesex pC1 (female) neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "267551639",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 32
- },
- {
- "upstream_neuron_id": "VFB_jrchjyrd",
- "upstream_neuron_name": "LHAV2k9_R - 424384254",
- "weight": 22,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "424384254",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 33
- },
- {
- "upstream_neuron_id": "VFB_jrchk745",
- "upstream_neuron_name": "SMP493_R - 676824431",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult superior medial protocerebrum neuron 493",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "676824431",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 34
- },
- {
- "upstream_neuron_id": "VFB_jrchjyu7",
- "upstream_neuron_name": "LHAV3j1_R - 297851977",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "297851977",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 35
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ch",
- "upstream_neuron_name": "SLP031_R - 5813026615",
- "weight": 52,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult superior lateral protocerebrum neuron 031",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813026615",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 36
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ep",
- "upstream_neuron_name": "SLP067_R - 297221971",
- "weight": 92,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 067",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "297221971",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 37
- },
- {
- "upstream_neuron_id": "VFB_jrchjz40",
- "upstream_neuron_name": "LHAV7b1_R - 577464071",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "577464071",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 38
- },
- {
- "upstream_neuron_id": "VFB_jrchjz41",
- "upstream_neuron_name": "LHAV7b1_R - 423351806",
- "weight": 23,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "423351806",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 39
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ch",
- "upstream_neuron_name": "SLP031_R - 5813026615",
- "weight": 59,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior lateral protocerebrum neuron 031",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813026615",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 40
- },
- {
- "upstream_neuron_id": "VFB_jrchk0fd",
- "upstream_neuron_name": "MBON23(a2sp)_R - 423382015",
- "weight": 21,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "mushroom body output neuron 23",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "423382015",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 41
- },
- {
- "upstream_neuron_id": "VFB_jrchjsi8",
- "upstream_neuron_name": "AVLP580_L - 1449200693",
- "weight": 75,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 580",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1449200693",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 42
- },
- {
- "upstream_neuron_id": "VFB_jrchjsai",
- "upstream_neuron_name": "AVLP435_R - 5813033561",
- "weight": 26,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 435",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813033561",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 43
- },
- {
- "upstream_neuron_id": "VFB_jrchk0xi",
- "upstream_neuron_name": "M_lvPNm43_R - 792024028",
- "weight": 24,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult multiglomerular antennal lobe projection neuron lvPN",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "792024028",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 44
- },
- {
- "upstream_neuron_id": "VFB_jrchk5in",
- "upstream_neuron_name": "SLP130_R - 456847100",
- "weight": 94,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult superior lateral protocerebrum neuron 130",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "456847100",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 45
- },
- {
- "upstream_neuron_id": "VFB_jrchjsp7",
- "upstream_neuron_name": "CL092_R - 734677385",
- "weight": 27,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult clamp neuron 092",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "734677385",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 46
- },
- {
- "upstream_neuron_id": "VFB_jrchjsra",
- "upstream_neuron_name": "CL132_R - 356140121",
- "weight": 30,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult clamp neuron 132",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "356140121",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 47
- },
- {
- "upstream_neuron_id": "VFB_jrchjrlh",
- "upstream_neuron_name": "AVLP031_R - 829145708",
- "weight": 80,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 031",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "829145708",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 48
- },
- {
- "upstream_neuron_id": "VFB_jrchjz42",
- "upstream_neuron_name": "LHAV7b1_R - 517479202",
- "weight": 20,
- "downstream_neuron_id": "VFB_jrchjti7",
- "downstream_neuron_name": "DSKMP3_R - 328559607",
- "upstream_class": "adult neuron",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "517479202",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "328559607",
- "_deepnote_index_column": 49
- },
- {
- "upstream_neuron_id": "VFB_jrchk5ao",
- "upstream_neuron_name": "SLP011_R - 297519736",
- "weight": 23,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior lateral protocerebrum neuron 011",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "297519736",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 50
- },
- {
- "upstream_neuron_id": "VFB_jrchjsi9",
- "upstream_neuron_name": "AVLP580_L - 5812991151",
- "weight": 64,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 580",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5812991151",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 51
- },
- {
- "upstream_neuron_id": "VFB_jrchjsrb",
- "upstream_neuron_name": "CL132_R - 387512128",
- "weight": 27,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult clamp neuron 132",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "387512128",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 52
- },
- {
- "upstream_neuron_id": "VFB_jrchjrxk",
- "upstream_neuron_name": "AVLP224_b_R - 1354722783",
- "weight": 24,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 224",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1354722783",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 53
- },
- {
- "upstream_neuron_id": "VFB_jrchk5in",
- "upstream_neuron_name": "SLP130_R - 456847100",
- "weight": 106,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 130",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "456847100",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 54
- },
- {
- "upstream_neuron_id": "VFB_jrchjs24",
- "upstream_neuron_name": "AVLP294_R - 1229197633",
- "weight": 24,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 294",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1229197633",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 55
- },
- {
- "upstream_neuron_id": "VFB_jrchk6zu",
- "upstream_neuron_name": "SMP449_R - 5813026592",
- "weight": 25,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior medial protocerebrum neuron 449",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "5813026592",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 56
- },
- {
- "upstream_neuron_id": "VFB_jrchk5jv",
- "upstream_neuron_name": "SLP152_R - 487812620",
- "weight": 28,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior lateral protocerebrum neuron 152",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "487812620",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 57
- },
- {
- "upstream_neuron_id": "VFB_jrchjrxe",
- "upstream_neuron_name": "AVLP223_R - 1356743512",
- "weight": 27,
- "downstream_neuron_id": "VFB_jrchjti2",
- "downstream_neuron_name": "DSKMP1A_R - 1135837629",
- "upstream_class": "adult anterior ventrolateral protocerebrum neuron 223",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "1356743512",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1135837629",
- "_deepnote_index_column": 58
- },
- {
- "upstream_neuron_id": "VFB_jrchk5qg",
- "upstream_neuron_name": "SLP244_R - 297533212",
- "weight": 33,
- "downstream_neuron_id": "VFB_jrchjti6",
- "downstream_neuron_name": "DSKMP3_R - 327937328",
- "upstream_class": "adult superior lateral protocerebrum neuron 244",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "297533212",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "327937328",
- "_deepnote_index_column": 59
- },
- {
- "upstream_neuron_id": "VFB_jrchk6g5",
- "upstream_neuron_name": "SMP157_R - 421041565",
- "weight": 32,
- "downstream_neuron_id": "VFB_jrchjti4",
- "downstream_neuron_name": "DSKMP1B_R - 1352077058",
- "upstream_class": "adult superior medial protocerebrum neuron 157",
- "downstream_class": "adult Drosulfakinin neuron",
- "up_data_source": "neuprint_JRC_Hemibrain_1point1",
- "up_accession": "421041565",
- "down_source": "neuprint_JRC_Hemibrain_1point1",
- "down_accession": "1352077058",
- "_deepnote_index_column": 60
- }
- ],
- "rows_bottom": null
- },
- "text/plain": " upstream_neuron_id upstream_neuron_name weight downstream_neuron_id \\\n0 VFB_jrchjsj3 AstA1_L - 362473525 28 VFB_jrchjti4 \n1 VFB_jrchk5zh SLP384_R - 482702027 20 VFB_jrchjti6 \n2 VFB_jrchjrjn AVLP001_R - 1321564092 26 VFB_jrchjti2 \n3 VFB_jrchk5eo SLP066_R - 327843160 42 VFB_jrchjti4 \n4 VFB_jrchk5qf SLP244_R - 298214577 27 VFB_jrchjti6 \n.. ... ... ... ... \n56 VFB_jrchk6zu SMP449_R - 5813026592 25 VFB_jrchjti4 \n57 VFB_jrchk5jv SLP152_R - 487812620 28 VFB_jrchjti4 \n58 VFB_jrchjrxe AVLP223_R - 1356743512 27 VFB_jrchjti2 \n59 VFB_jrchk5qg SLP244_R - 297533212 33 VFB_jrchjti6 \n60 VFB_jrchk6g5 SMP157_R - 421041565 32 VFB_jrchjti4 \n\n downstream_neuron_name upstream_class \\\n0 DSKMP1B_R - 1352077058 adult neuron \n1 DSKMP3_R - 327937328 adult superior lateral protocerebrum neuron 384 \n2 DSKMP1A_R - 1135837629 adult anterior ventrolateral protocerebrum neu... \n3 DSKMP1B_R - 1352077058 adult superior lateral protocerebrum neuron 066 \n4 DSKMP3_R - 327937328 adult superior lateral protocerebrum neuron 244 \n.. ... ... \n56 DSKMP1B_R - 1352077058 adult superior medial protocerebrum neuron 449 \n57 DSKMP1B_R - 1352077058 adult superior lateral protocerebrum neuron 152 \n58 DSKMP1A_R - 1135837629 adult anterior ventrolateral protocerebrum neu... \n59 DSKMP3_R - 327937328 adult superior lateral protocerebrum neuron 244 \n60 DSKMP1B_R - 1352077058 adult superior medial protocerebrum neuron 157 \n\n downstream_class up_data_source up_accession \\\n0 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 362473525 \n1 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 482702027 \n2 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 1321564092 \n3 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 327843160 \n4 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 298214577 \n.. ... ... ... \n56 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 5813026592 \n57 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 487812620 \n58 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 1356743512 \n59 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 297533212 \n60 adult Drosulfakinin neuron neuprint_JRC_Hemibrain_1point1 421041565 \n\n down_source down_accession \n0 neuprint_JRC_Hemibrain_1point1 1352077058 \n1 neuprint_JRC_Hemibrain_1point1 327937328 \n2 neuprint_JRC_Hemibrain_1point1 1135837629 \n3 neuprint_JRC_Hemibrain_1point1 1352077058 \n4 neuprint_JRC_Hemibrain_1point1 327937328 \n.. ... ... \n56 neuprint_JRC_Hemibrain_1point1 1352077058 \n57 neuprint_JRC_Hemibrain_1point1 1352077058 \n58 neuprint_JRC_Hemibrain_1point1 1135837629 \n59 neuprint_JRC_Hemibrain_1point1 327937328 \n60 neuprint_JRC_Hemibrain_1point1 1352077058 \n\n[61 rows x 11 columns]",
- "text/html": "\n\n
\n \n \n | \n upstream_neuron_id | \n upstream_neuron_name | \n weight | \n downstream_neuron_id | \n downstream_neuron_name | \n upstream_class | \n downstream_class | \n up_data_source | \n up_accession | \n down_source | \n down_accession | \n
\n \n \n \n 0 | \n VFB_jrchjsj3 | \n AstA1_L - 362473525 | \n 28 | \n VFB_jrchjti4 | \n DSKMP1B_R - 1352077058 | \n adult neuron | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 362473525 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n
\n \n 1 | \n VFB_jrchk5zh | \n SLP384_R - 482702027 | \n 20 | \n VFB_jrchjti6 | \n DSKMP3_R - 327937328 | \n adult superior lateral protocerebrum neuron 384 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 482702027 | \n neuprint_JRC_Hemibrain_1point1 | \n 327937328 | \n
\n \n 2 | \n VFB_jrchjrjn | \n AVLP001_R - 1321564092 | \n 26 | \n VFB_jrchjti2 | \n DSKMP1A_R - 1135837629 | \n adult anterior ventrolateral protocerebrum neu... | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 1321564092 | \n neuprint_JRC_Hemibrain_1point1 | \n 1135837629 | \n
\n \n 3 | \n VFB_jrchk5eo | \n SLP066_R - 327843160 | \n 42 | \n VFB_jrchjti4 | \n DSKMP1B_R - 1352077058 | \n adult superior lateral protocerebrum neuron 066 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 327843160 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n
\n \n 4 | \n VFB_jrchk5qf | \n SLP244_R - 298214577 | \n 27 | \n VFB_jrchjti6 | \n DSKMP3_R - 327937328 | \n adult superior lateral protocerebrum neuron 244 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 298214577 | \n neuprint_JRC_Hemibrain_1point1 | \n 327937328 | \n
\n \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n ... | \n
\n \n 56 | \n VFB_jrchk6zu | \n SMP449_R - 5813026592 | \n 25 | \n VFB_jrchjti4 | \n DSKMP1B_R - 1352077058 | \n adult superior medial protocerebrum neuron 449 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 5813026592 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n
\n \n 57 | \n VFB_jrchk5jv | \n SLP152_R - 487812620 | \n 28 | \n VFB_jrchjti4 | \n DSKMP1B_R - 1352077058 | \n adult superior lateral protocerebrum neuron 152 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 487812620 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n
\n \n 58 | \n VFB_jrchjrxe | \n AVLP223_R - 1356743512 | \n 27 | \n VFB_jrchjti2 | \n DSKMP1A_R - 1135837629 | \n adult anterior ventrolateral protocerebrum neu... | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 1356743512 | \n neuprint_JRC_Hemibrain_1point1 | \n 1135837629 | \n
\n \n 59 | \n VFB_jrchk5qg | \n SLP244_R - 297533212 | \n 33 | \n VFB_jrchjti6 | \n DSKMP3_R - 327937328 | \n adult superior lateral protocerebrum neuron 244 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 297533212 | \n neuprint_JRC_Hemibrain_1point1 | \n 327937328 | \n
\n \n 60 | \n VFB_jrchk6g5 | \n SMP157_R - 421041565 | \n 32 | \n VFB_jrchjti4 | \n DSKMP1B_R - 1352077058 | \n adult superior medial protocerebrum neuron 157 | \n adult Drosulfakinin neuron | \n neuprint_JRC_Hemibrain_1point1 | \n 421041565 | \n neuprint_JRC_Hemibrain_1point1 | \n 1352077058 | \n
\n \n
\n
61 rows × 11 columns
\n
"
- },
- "metadata": {}
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "['Acetylcholine_receptor', 'Calcium_binding', 'Dopamine_receptor', 'Enzyme', 'GABA_receptor', 'GPCR', 'Glutamate_receptor', 'Gustatory_receptor', 'Histamine_receptor', 'Hormone', 'Ion_channel', 'Mechanosensory_ion_channel', 'Neuropeptide', 'Octopamine_receptor', 'Odorant_binding', 'Olfactory_receptor', 'Peptide_or_protein_hormone_receptor', 'Photoreceptor', 'Serotonin_receptor', 'Thermosensory_ion_channel', 'Transcription_factor', 'Tyramine_receptor']\n"
+ ]
+ }
+ ],
+ "source": [
+ "functions = vc.get_gene_function_filters()\n",
+ "print(functions)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Then run transcriptomics query speicfying a gene function to filter on"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 14,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " cell_type cell_type_id sample_sex \\\n",
+ "0 adult olfactory receptor neuron FBbt_00007386 female organism \n",
+ "1 adult olfactory receptor neuron FBbt_00007386 male organism \n",
+ "2 adult olfactory receptor neuron FBbt_00007386 None \n",
+ "3 adult olfactory receptor neuron FBbt_00007386 female organism \n",
+ "4 adult olfactory receptor neuron FBbt_00007386 None \n",
+ "\n",
+ " sample_tissue \\\n",
+ "0 [antenna] \n",
+ "1 [adult head, adult, wing, proboscis, testis, m... \n",
+ "2 [antenna] \n",
+ "3 [adult head] \n",
+ "4 [adult head] \n",
+ "\n",
+ " ref gene gene_id \\\n",
+ "0 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n",
+ "1 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n",
+ "2 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n",
+ "3 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n",
+ "4 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n",
+ "\n",
+ " function extent level \n",
+ "0 [Olfactory_receptor, Ion_channel, Odorant_bind... 0.726703 1699.4030 \n",
+ "1 [Olfactory_receptor, Ion_channel, Odorant_bind... 0.734430 2036.3027 \n",
+ "2 [Olfactory_receptor, Ion_channel, Odorant_bind... 0.759753 1789.3881 \n",
+ "3 [Olfactory_receptor, Ion_channel, Odorant_bind... 0.719388 2769.3171 \n",
+ "4 [Olfactory_receptor, Ion_channel, Odorant_bind... 0.702703 2649.6653 \n"
+ ]
}
+ ],
+ "source": [
+ "filtered_profile = vc.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron', gene_type='Olfactory_receptor')\n",
+ "print(filtered_profile.head())"
]
}
],
- "nbformat": 4,
- "nbformat_minor": 2,
"metadata": {
- "orig_nbformat": 2,
- "deepnote_notebook_id": "718b5c51-e3e5-4906-8b47-3ce8982d56ba",
"deepnote": {},
- "deepnote_execution_queue": []
- }
+ "deepnote_execution_queue": [],
+ "deepnote_notebook_id": "718b5c51-e3e5-4906-8b47-3ce8982d56ba",
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.5"
+ },
+ "orig_nbformat": 2
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
}