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hgvsParseR

An R-package for parsing and building variant descriptor strings compliant with the HGVS standard. See http://varnomen.hgvs.org/ for more information on HGVS strings. For documentation see https://github.com/VariantEffect/hgvsParseR/blob/master/manual.pdf

Requires:

  • R 3.1.2 or higher

Recommended:

  • devtools
  • testthat
  • roxygen2

Installation:

  1. Open command line terminal
  2. If not already installed, install devtools install.packages("devtools")
  3. Load devtools library("devtools")
  4. Install hgvsParseR install_github("VariantEffect/hgvsParseR")

Usage:

See https://github.com/VariantEffect/hgvsParseR/blob/master/manual.pdf