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Allow get_fmriprep_timeseries on invalid BIDS data #30

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vitruvi opened this issue Jan 27, 2022 · 1 comment
Open

Allow get_fmriprep_timeseries on invalid BIDS data #30

vitruvi opened this issue Jan 27, 2022 · 1 comment

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@vitruvi
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vitruvi commented Jan 27, 2022

I could only run fmriprep with skipping bids validation. I want to extract TS on ROI.
I get the error below.

Should invalid_filters="allow" flag be modifiable via the get_fmriprep_timeseries function arguments as a workaround for this?

/miniconda3/envs/nideconv/lib/python3.9/site-packages/bids/layout/layout.py", line 619, in get
raise ValueError(msg + "If you're sure you want to impose "
ValueError: 'extensions' is not a recognized entity. Did you mean ['extension']? If you're sure you want to impose this constraint, set invalid_filters='allow'.

@alexsayal
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Hello!

I am getting the same error on a validated BIDS dataset. Did you have any luck?

Thanks,

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