From cf8665690398de49a2c28a2afd8a3e35acdb3122 Mon Sep 17 00:00:00 2001
From: Tyghe Vallard <vallardt@gmail.com>
Date: Tue, 2 Feb 2016 13:25:36 -0500
Subject: [PATCH] removing bad tests

---
 tests/paired_to_interleave.robot | 50 --------------------------------
 1 file changed, 50 deletions(-)
 delete mode 100644 tests/paired_to_interleave.robot

diff --git a/tests/paired_to_interleave.robot b/tests/paired_to_interleave.robot
deleted file mode 100644
index f90e1aa..0000000
--- a/tests/paired_to_interleave.robot
+++ /dev/null
@@ -1,50 +0,0 @@
-*** Settings ***
-Library             Process
-Library             OperatingSystem
-Library             Collections 
-Library             String
-Suite Teardown      Terminate All Processes    
-
-*** Variables ***
-${jip_dir} =                 ${CURDIR}/../pyjip
-${in_fastq} =                ${CURDIR}/testinput/test.fastq
-${testout} =                 ${CURDIR}/testoutput/output
-${fastaout} =                >id1\nATGC
-${tool} =                    ${jip_dir}/convert_format.jip
-
-*** Test Cases *** 
-convert_format file to stdout
-    Append To Environment Variable  PYTHONPATH    ${CURDIR}/..
-    ${result} =    Run Process      ${tool} -i ${in_fastq} --out-format fasta     shell=True    stderr=STDOUT
-    Log To Console                  ${result.stdout}
-    Should Be Equal As Integers     ${result.rc}            0 
-    Should Be Equal As Strings      ${result.stdout}        ${fastaout}
-
-convert_format file to file
-    ${result} =    Run Process      rm ${testout}.fasta; ${tool} -i ${in_fastq} -o ${testout}.fasta    shell=True    stderr=STDOUT
-    Log To Console                  ${result.stdout}
-    Should Be Equal As Integers     ${result.rc}            0 
-    ${actual_contents} =            Get File                ${testout}.fasta
-    ${actual_contents} =            Strip String            ${actual_contents}
-    Should Be Equal As Strings      ${fastaout}             ${actual_contents}
-
-convert_format stdin to stdout
-    ${result} =    Run Process      cat ${in_fastq} | ${tool} --in-format fastq --out-format fasta     shell=True    stderr=STDOUT
-    Log To Console                  ${result.stdout}
-    Should Be Equal As Integers     ${result.rc}            0 
-    Should Be Equal As Strings      ${result.stdout}    ${fastaout}
-
-convert_format missing outformat
-    ${result} =    Run Process      ${tool} -i ${in_fastq}    shell=True    stderr=STDOUT
-    Log To Console                  ${result.stdout}
-    ${result} =    Run Process      ${tool} -i ${in_fastq}    shell=True    stderr=STDOUT
-    Should Be Equal As Integers     ${result.rc}            1 
-    ${lines}                        Get Regexp Matches      ${result.stdout}        Have to supply output format if output is stdout
-    Should Be Equal As Strings      @{lines}[0]             Have to supply output format if output is stdout
-
-convert_format missing informat
-    ${result} =    Run Process      cat ${in_fastq} | ${tool} --out-format fasta    shell=True    stderr=STDOUT
-    Log To Console                  ${result.stdout}
-    Should Be Equal As Integers     ${result.rc}            1 
-    ${lines}                        Get Regexp Matches      ${result.stdout}        Have to supply input format if input is stdin
-    Should Be Equal As Strings      @{lines}[0]             Have to supply input format if input is stdin