From 3b6fa4d62cf867e5cf13481433d34d053f3afbfa Mon Sep 17 00:00:00 2001
From: Tyghe Vallard <vallardt@gmail.com>
Date: Tue, 19 Jan 2016 15:05:44 -0500
Subject: [PATCH 1/2] add install stuff

---
 README.md | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/README.md b/README.md
index 13b78e8..b4ae90c 100644
--- a/README.md
+++ b/README.md
@@ -1 +1,19 @@
 # BioFramework
+
+# Setup/Install
+
+1. Install miniconda
+
+   ```
+   wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O conda.sh
+   bash conda.sh -p myconda
+   export PATH=${PWD}/myconda/bin:$PATH
+   conda config --add channels r
+   conda config --add channels bioconda
+   ```
+
+2. Install required software
+
+   ```
+   conda install --file requirements.txt
+   ```

From a4c4cc494bd1add219bba0413b4f685bf48a9276 Mon Sep 17 00:00:00 2001
From: Tyghe Vallard <vallardt@gmail.com>
Date: Tue, 19 Jan 2016 15:10:30 -0500
Subject: [PATCH 2/2] requirements file

---
 requirements.txt | 3 +++
 1 file changed, 3 insertions(+)
 create mode 100644 requirements.txt

diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..385551b
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,3 @@
+bwa
+samtools
+cutadapt