diff --git a/README.md b/README.md index 16a5f43..c98ad7f 100644 --- a/README.md +++ b/README.md @@ -9,150 +9,144 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2024-06-09 00:42:38. +update was on 2024-06-16 00:42:14.
-1. **Analysis of rural broadband adoption dynamics: A theory-driven - agent-based model.** +1. **Maternal care leads to the evolution of long, slow lives.** - Agarwal A, Canfield C. + Zipple MN, Reeve HK, Peniston OJ. - PLoS One. 2024 Jun 6;19(6):e0302146. doi: - 10.1371/journal.pone.0302146. eCollection 2024. + Proc Natl Acad Sci U S A. 2024 Jun 18;121(25):e2403491121. doi: + 10.1073/pnas.2403491121. Epub 2024 Jun 14. - > However, there is typically insufficient data available to - > understand consumer attitudes. We propose using an agent-based - > model grounded in the Theory of Planned Behavior, a behavioral - > theory that explains the consumer’s decision-making process. The - > model … + > Here, we hypothesize that these two axes of variation are causally + > related to each other, such that extended dependence of offspring + > on maternal presence leads to the evolution of longer lives at the + > expense of reproduction. We use a combination of deterministic + > modeling a … -2. **Elucidating the interaction between stretch and stiffness using an - agent-based spring network model of progressive pulmonary - fibrosis.** +2. **Mechanistic modeling of alarm signaling in seed-harvester ants.** - Hall JK, Bates JHT, Krishnan R, Kim JH, Deng Y, Lutchen KR, Suki B. + Lin MR, Guo X, Azizi A, Fewell JH, Milner F. - Front Netw Physiol. 2024 May 22;4:1396383. doi: - 10.3389/fnetp.2024.1396383. eCollection 2024. + Math Biosci Eng. 2024 Mar 27;21(4):5536-5555. doi: + 10.3934/mbe.2024244. - > Pulmonary fibrosis is a deadly disease that involves the - > dysregulation of fibroblasts and myofibroblasts, which are - > mechanosensitive. Previous computational models have succeeded in - > modeling stiffness-mediated fibroblasts behaviors; however, these - > models have … + > To effectively address potential dangers, a social group must + > swiftly communicate the threat throughout the collective while + > conserving energy in the event that the threat is unfounded. + > Through a combination of modeling, simulation, and empirical + > observations of alarm spre … -3. **How can agent-based modelling provide new insights into the impact - of minimum unit pricing in Scotland?** +3. **Using electric vehicles to enhance power outage resilience - An + agent-based modeling approach.** - Boyd J, Holmes J, Gibbs N, Buckley C, Purshouse R, Meier P. + Churchill M, Monroe J, Bristow D, Crawford C. - Drug Alcohol Rev. 2024 Jun 5. doi: 10.1111/dar.13880. Online ahead - of print. + Heliyon. 2024 May 29;10(11):e32104. doi: + 10.1016/j.heliyon.2024.e32104. eCollection 2024 Jun 15. - > ., balance between on-licence and off-licence outlets), lead to - > long-term population-level trends (e.g., youth drinking) and - > social harms (e.g., violence). Agent-based modelling captures - > heterogeneity, emergence, feedback loops and adaptive and dynamic - > featur … + > While the bulk of the past work has focused on using EVs to + > increase the resilience of the distribution grid, or individual + > buildings, to a power outage, this paper was novel in its use of + > an agent-based model to study EVs that are performing functions to + > inc … -4. **Game-theoretic agent-based modelling of micro-level conflict: - Evidence from the ISIS-Kurdish war.** +4. **What’s luck got to do with it? A generative model for examining + the role of stochasticity in age-at-death, with implications for + bioarchaeology.** - Macmillan-Scott O, Ünver A, Musolesi M. + Wyatt B, Anderson A, Ward S, Wilson LAB. - PLoS One. 2024 Jun 5;19(6):e0297483. doi: - 10.1371/journal.pone.0297483. eCollection 2024. + Am J Hum Biol. 2024 Jun 12:e24115. doi: 10.1002/ajhb.24115. Online + ahead of print. - > This article delves into the dynamics of a dyadic political - > violence case study in Rojava, Northern Syria, focusing on the - > conflict between Kurdish rebels and ISIS from January 1, 2017, to - > December 31, 2019. We employ agent-based modelling and a - > formalisation … + > The present study introduces a computer simulation approach to + > modeling stochasticity’s contribution to the mortality schedule of + > a simulated cohort. METHODS: The present study employs an + > agent-based model of 15,100 individuals across a 120 year period … -5. **COVID-19 outbreaks in residential aged care facilities: an - agent-based modeling study.** +5. **Agent-based modeling to estimate the impact of lockdown scenarios + and events on a pandemic exemplified on SARS-CoV-2.** - McAndrew F, Sacks-Davis R, Abeysuriya RG, Delport D, West D, Parta - I, Majumdar S, Hellard M, Scott N. + Nitzsche C, Simm S. - Front Public Health. 2024 May 21;12:1344916. doi: - 10.3389/fpubh.2024.1344916. eCollection 2024. + Sci Rep. 2024 Jun 11;14(1):13391. doi: 10.1038/s41598-024-63795-1. - > INTRODUCTION: A disproportionate number of COVID-19 deaths occur - > in Residential Aged Care Facilities (RACFs), where better evidence - > is needed to target COVID-19 interventions to prevent mortality. - > This study used an agent-based model to assess the role of com … + > In actual pandemic situations like COVID-19, it is important to + > understand the influence of single mitigation measures as well as + > combinations to create most dynamic impact for lockdown scenarios. + > Therefore we created an agent-based model (ABM) to simulate th … -6. **Pleiotropy alleviates the fitness costs associated with resource - allocation trade-offs in immune signalling networks.** +6. **Overdose deaths before and during the COVID-19 pandemic in a US + county.** - Martin RA, Tate AT. + Brown CH, Johnson KA, Hills HA, Vermeer W, Clarke DL, Barnett JT, + Newman RT, Burns TL, Pellan WA. - Proc Biol Sci. 2024 Jun;291(2024):20240446. doi: - 10.1098/rspb.2024.0446. Epub 2024 Jun 5. + Front Public Health. 2024 May 27;12:1366161. doi: + 10.3389/fpubh.2024.1366161. eCollection 2024. - > To investigate factors that could influence the evolutionary - > maintenance of pleiotropy in gene networks, we developed an - > agent-based model of co-evolution between parasites and hosts. - > Hosts comprise signalling networks that must faithfully complete a - > developm … + > As a next step in predicting which policies and practices will + > best reduce local overdoses, we propose using simulation modeling + > with agent-based models to examine complex interacting systems…. -7. **Agent-based model demonstrates the impact of nonlinear, complex - interactions between cytokinces on muscle regeneration.** +7. **Engineering a Computable Epiblast for in silico Modeling of + Developmental Toxicity.** - Haase M, Comlekoglu T, Petrucciani A, Peirce SM, Blemker SS. + Barham K, Spencer R, Baker NC, Knudsen TB. - Elife. 2024 Jun 3;13:RP91924. doi: 10.7554/eLife.91924. + Reprod Toxicol. 2024 Jun 8:108625. doi: + 10.1016/j.reprotox.2024.108625. Online ahead of print. - > To understand the degree to which individual cellular behaviors - > impact endogenous mechanisms of muscle recovery, we developed an - > agent-based model (ABM) using the Cellular-Potts framework to - > simulate the dynamic microenvironment of a cross-section of murine - > s … + > Mesodermal fate is modeled by synthetic activity of the + > BMP4-NODAL-WNT signaling axis. …Executing the model renders a + > quantitative cell-level computation of mesodermal fate and + > consequences of perturbation based on known biology. … -8. **Surrogate Modeling and Control of Medical Digital Twins.** +8. **Capillary interactions drive the self-organization of bacterial + colonies.** - Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC. + Black ME, Fei C, Alert R, Wingreen NS, Shaevitz JW. - ArXiv \[Preprint\]. 2024 May 20:arXiv:2402.05750v2. + bioRxiv \[Preprint\]. 2024 Jun 2:2024.05.28.596252. doi: + 10.1101/2024.05.28.596252. - > This paper introduces surrogate modeling algorithms for the - > purpose of optimal control applications. As a use case, we focus - > on agent-based models (ABMs), a common model type in biomedicine - > for which there are no readily available optimal contro … + > We develop an experimental apparatus that allows us to control + > bacterial collective behaviors by varying the strength and range + > of capillary forces. Combining 3D imaging and cell tracking with + > agent-based modeling, we demonstrate that capillary attraction org + > … -9. **Spatial interactions modulate tumor growth and immune - infiltration.** +9. **From multiplicity of infection to force of infection for sparsely + sampled Plasmodium falciparum populations at high transmission.** - West J, Marzban S, Srivast S, Kartika S, Bravo R, Safriel R, Zarski - A, Anderson A, Chung C, Amelio A. + Zhan Q, Tiedje K, Day KP, Pascual M. - Res Sq \[Preprint\]. 2024 May 22:rs.3.rs-3962451. doi: - 10.21203/rs.3.rs-3962451/v1. + medRxiv \[Preprint\]. 2024 May 27:2024.02.12.24302148. doi: + 10.1101/2024.02.12.24302148. - > Historically, agent-based models of cancer progression have been - > constructed with rules that govern birth, death and migration, - > with attempts to map local rules to emergent global growth - > dynamics. …Lenia is subsequently used to develop data-informed - > mode … + > FOI remains difficult, expensive, and labor-intensive to + > accurately measure, especially in high-transmission regions, + > whether directly via cohort studies or indirectly via the fitting + > of epidemiological models to repeated cross-sectional surveys. We + > propose here the applic … -10. **Liquid-like condensates that bind actin drive filament - polymerization and bundling.** +10. **Agent-based modeling of the COVID-19 pandemic in Florida.** - Walker C, Chandrasekaran A, Mansour D, Graham K, Torres A, Wang L, - Lafer EM, Rangamani P, Stachowiak JC. + Pillai AN, Toh KB, Perdomo D, Bhargava S, Stoltzfus A, Longini IM + Jr, Pearson CAB, Hladish TJ. - bioRxiv \[Preprint\]. 2024 May 22:2024.05.04.592527. doi: - 10.1101/2024.05.04.592527. + Epidemics. 2024 May 17;47:100774. doi: 10.1016/j.epidem.2024.100774. + Online ahead of print. - > To probe the minimum requirements for condensate-mediated actin - > bundling, we developed an agent-based computational model. Guided - > by its predictions, we hypothesized that any condensate-forming - > protein that binds actin could bundle filaments through multivale - > … + > Our group predominantly uses agent-based models (ABMs) to study + > fine-scale intervention scenarios. …In this manuscript, we discuss + > how our group navigated this transition as we modeled the + > pandemic. The role of modelers often included nearly r … ## Code of Conduct