diff --git a/README.md b/README.md
index 041085a..73396ad 100644
--- a/README.md
+++ b/README.md
@@ -9,148 +9,157 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last
-update was on 2024-10-06 00:50:54.
+update was on 2024-10-13 00:50:38.
-1. **A novel format of TNF-alpha binding affibody molecule ameliorate
- coronary artery endothelial injury in a mouse model of Kawasaki
- disease.**
+1. **Analysis of postdisaster economy using high-resolution disaster
+ and economy simulations.**
- Zhu J, Yu H, Xie L, Shuai D, Huang Z, Chen Y, Ni C, Jia C, Rong X,
- Zhang L, Chu M.
+ Gill A, Lalith M, Hori M, Ogawa Y.
- Int J Biol Macromol. 2024 Oct 2:136255. doi:
- 10.1016/j.ijbiomac.2024.136255. Online ahead of print.
+ Risk Anal. 2024 Oct 9. doi: 10.1111/risa.17662. Online ahead of
+ print.
- > Herein, we examine the potential therapeutic capabilities of a
- > novel type of TNFalpha-targeting agent based on an affibody
- > molecule possessing fundamentally different properties than mAbs.
- > …
+ > The framework consists of three components: a physics-based
+ > simulator to simulate the disaster and estimate the response of
+ > the infrastructure; a tool that estimates the losses suffered by
+ > the infrastructure based on its response; and an agent-based
+ > economic mode …
-2. **Cost-effectiveness of SARS-CoV-2 self-testing at routine
- gatherings to minimize community-level infections in lower-middle
- income countries: A mathematical modeling study.**
+2. **Emergent ecology in a microscale model of the surface ocean.**
- Hansen MA, Han AX, Chevalier JM, Klock E, Pandithakoralage H, Nooy
- A, Ockhuisen T, Girdwood SJ, Lekodeba NA, Khan S, Jenkins HE,
- Johnson CC, Sacks JA, Russell CA, Nichols BE.
+ Eigemann F, Hoffmann J, Schampera C, Liu S, Bolaños LM, Heemeyer M,
+ Carlson CA, Giovannoni S, Hellweger FL.
- PLoS One. 2024 Oct 4;19(10):e0311198. doi:
- 10.1371/journal.pone.0311198. eCollection 2024.
+ mBio. 2024 Oct 9:e0237224. doi: 10.1128/mbio.02372-24. Online ahead
+ of print.
- > Over the past four years, self-testing strategies have been an
- > impactful tool for countries’ response to the COVID-19 pandemic,
- > especially early on to mitigate the spread when vaccination and
- > treatment options were limited. We used an agent-based
- > mathematical mod …
+ > Microbial processes operate at the microscale, which is not
+ > resolved by existing ecosystem models. Here, we present a novel
+ > model that simulates a 1 mL three-dimensional cube using a hybrid
+ > Lagrangian-Eulerian approach, at ecologically relevant timescales.
+ > …We pre …
-3. **Quantifying age-specific household contacts in Aotearoa New
- Zealand for infectious disease modelling.**
+3. **Reinforcement Learning Interventions on Boundedly Rational Human
+ Agents in Frictionful Tasks.**
- Sullivan C, Senanayake P, Plank MJ.
+ Nofshin E, Swaroop S, Pan W, Murphy S, Doshi-Velez F.
- R Soc Open Sci. 2024 Oct 2;11(10):240550. doi: 10.1098/rsos.240550.
- eCollection 2024 Oct.
+ Proc Int Joint Conf Auton Agents Multiagent Syst. 2024
+ May;2024:1482-1491. Epub 2024 May 6.
- > Here we use a comprehensive household composition dataset based on
- > Aotearoa New Zealand census and administrative data to construct a
- > household contact matrix and a synthetic population that can be
- > used for modelling. We investigate the behaviour of a
- > compartment-based and …
+ > In these settings, the AI agent must personalize rapidly (before
+ > the individual disengages) and interpretably, to help us
+ > understand the behavioral interventions. In this paper, we
+ > introduce Behavior Model Reinforcement Learning (BMRL), a
+ > framework in which an AI agent int …
-4. **Probability of early infection extinction depends linearly on the
- virus clearance rate.**
+4. **Mathematical modelling for pandemic preparedness in Canada:
+ Learning from COVID-19.**
- Juhász N, Bartha FA, Marzban S, Han R, Röst G.
+ Ogden NH, Acheson ES, Brown K, Champredon D, Colijn C, Diener A,
+ Dushoff J, Earn DJ, Gabriele-Rivet V, Gangbè M, Guillouzic S,
+ Hennessy D, Hongoh V, Hurford A, Kanary L, Li M, Ng V, Otto SP,
+ Papst I, Rees EE, Tuite A, MacLeod MR, Murall CL, Waddell L, Wasfi
+ R, Wolfson M.
- R Soc Open Sci. 2024 Oct 2;11(10):240903. doi: 10.1098/rsos.240903.
- eCollection 2024 Oct.
+ Can Commun Dis Rep. 2024 Oct 3;50(10):345-356. doi:
+ 10.14745/ccdr.v50i10a03. eCollection 2024 Oct.
-5. **Metabolic interactions shape emergent biofilm structures in a
- conceptual model of gut mucosal bacterial communities.**
+ > BACKGROUND: The COVID-19 pandemic underlined the need for pandemic
+ > planning but also brought into focus the use of mathematical
+ > modelling to support public health decisions. The types of models
+ > needed (compartment, agent-based, importation) are describ …
- Valiei A, Dickson A, Aminian-Dehkordi J, Mofrad MRK.
+5. **Calibration of stochastic, agent-based neuron growth models with
+ approximate Bayesian computation.**
- NPJ Biofilms Microbiomes. 2024 Oct 2;10(1):99. doi:
- 10.1038/s41522-024-00572-y.
+ Duswald T, Breitwieser L, Thorne T, Wohlmuth B, Bauer R.
- > The gut microbiome plays a major role in human health; however,
- > little is known about the structural arrangement of microbes and
- > factors governing their distribution. In this work, we present an
- > in silico agent-based model (ABM) to conceptually simulate the d …
+ J Math Biol. 2024 Oct 8;89(5):50. doi: 10.1007/s00285-024-02144-2.
-6. **On the move: Influence of animal movements on count error during
- drone surveys.**
+ > Understanding how genetically encoded rules drive and guide
+ > complex neuronal growth processes is essential to comprehending
+ > the brain’s architecture, and agent-based models (ABMs) offer a
+ > powerful simulation approach to further develop this
+ > understanding. … …
- Schultz EA, Ellison-Neary N, Boudreau MR, Street GM, Jones LR, Evans
- KO, Iglay RB.
+6. **A Nitric Oxide-Sensing T1 Contrast Agent for In Vivo Molecular MR
+ Imaging of Inflammatory Disease.**
- Ecol Evol. 2024 Sep 29;14(10):e70287. doi: 10.1002/ece3.70287.
- eCollection 2024 Oct.
+ Hong A, Vollett KDW, Cheng HM.
- > However, drone-based surveys may also introduce counting errors,
- > especially when monitoring mobile animals. Using an agent-based
- > model simulation approach, we evaluated the error associated with
- > counting a single animal across various drone flight patterns un …
+ ACS Sens. 2024 Oct 8. doi: 10.1021/acssensors.4c01604. Online ahead
+ of print.
-7. **Exploring Trade-Offs for Online Mental Health Matching:
- Agent-Based Modeling Study.**
+ > In this study, we present a magnetic resonance imaging (MRI)
+ > contrast agent based on a manganese porphyrin for specific imaging
+ > of NO. This agent is activated by NO, binds to tissue protein,
+ > accumulates so long as NO is actively produced, and confers a
+ > substantial b …
- Liu Y, Fang A, Moriarty G, Firman C, Kraut RE, Zhu H.
+7. **A bidirectional pedestrian macroscopic speed model construction
+ based on pedestrian microscopic simulation experiments.**
- JMIR Form Res. 2024 Oct 1;8:e58241. doi: 10.2196/58241.
+ Gao X, Zhang H, Qi H, He B.
- > OBJECTIVE: In this study, we collaborated with one of the world’s
- > largest OMHCs; our contribution is to show the application of
- > agent-based modeling for the design of online community matching
- > algorithms. We developed an agent-based simulation f …
+ PLoS One. 2024 Oct 7;19(10):e0311538. doi:
+ 10.1371/journal.pone.0311538. eCollection 2024.
-8. **SMoRe GloS: An efficient and flexible framework for inferring
- global sensitivity of agent-based model parameters.**
+ > In order to explore the possibility of using microscopic
+ > pedestrian flow simulations for macroscopic speed modeling of
+ > pedestrian flows, a series of two-way pedestrian cross-flow
+ > simulation experiments were designed. …A series of simulations are
+ > built and performed on th …
- Bergman DR, Jackson T, Jain HV, Norton KA.
+8. **Design, simulation and feasibility of the innovative agricultural
+ warehouse receipt system through dynamic programming and agent-based
+ models.**
- bioRxiv \[Preprint\]. 2024 Sep 22:2024.09.18.613723. doi:
- 10.1101/2024.09.18.613723.
+ Riazi M, Mojaverian SM, Shirzadi Laskookalayeh S, Mirzaei A.
- > Agent-based models (ABMs) have become essential tools for
- > simulating complex biological, ecological, and social systems
- > where emergent behaviors arise from the interactions among
- > individual agents. …Remarkably, our method also estimates
- > sensitivities for AB …
+ Sci Rep. 2024 Oct 5;14(1):23182. doi: 10.1038/s41598-024-74519-w.
-9. **Feature selection integrating Shapley values and mutual
- information in reinforcement learning: An application in the
- prediction of post-operative outcomes in patients with end-stage
- renal disease.**
+ > The design process incorporated the FAO-provided (2009) warehouse
+ > receipt system development, considering the experiences of various
+ > countries and the institutional and financial regulations specific
+ > to Iran. Additionally, a dynamic programming model was used to
+ > simulate t …
- Kim SH, Park SY, Seo H, Woo J.
+9. **A novel format of TNF-alpha binding affibody molecule ameliorate
+ coronary artery endothelial injury in a mouse model of Kawasaki
+ disease.**
- Comput Methods Programs Biomed. 2024 Sep 21;257:108416. doi:
- 10.1016/j.cmpb.2024.108416. Online ahead of print.
+ Zhu J, Yu H, Xie L, Shuai D, Huang Z, Chen Y, Ni C, Jia C, Rong X,
+ Zhang L, Chu M.
- > METHODS: We proposed a multi-agent feature selection model based
- > on a comprehensive reward function that combines classification
- > model performance, Shapley additive explanations values, and the
- > mutual information. …CONCLUSION: This study contributes important
- > rese …
+ Int J Biol Macromol. 2024 Oct 2;281(Pt 1):136255. doi:
+ 10.1016/j.ijbiomac.2024.136255. Online ahead of print.
-10. **Integrating social learning and network formation for social
- tipping towards a sustainable future.**
+ > Herein, we examine the potential therapeutic capabilities of a
+ > novel type of TNFalpha-targeting agent based on an affibody
+ > molecule possessing fundamentally different properties than mAbs.
+ > …
- von Flüe L, Vogt S.
+10. **Cost-effectiveness of SARS-CoV-2 self-testing at routine
+ gatherings to minimize community-level infections in lower-middle
+ income countries: A mathematical modeling study.**
- Curr Opin Psychol. 2024 Sep 24;60:101915. doi:
- 10.1016/j.copsyc.2024.101915. Online ahead of print.
+ Hansen MA, Han AX, Chevalier JM, Klock E, Pandithakoralage H, Nooy
+ A, Ockhuisen T, Girdwood SJ, Lekodeba NA, Khan S, Jenkins HE,
+ Johnson CC, Sacks JA, Russell CA, Nichols BE.
+
+ PLoS One. 2024 Oct 4;19(10):e0311198. doi:
+ 10.1371/journal.pone.0311198. eCollection 2024.
- > Understanding these dynamics is crucial for promoting a cultural
- > shift towards sustainability, yet our grasp of how normative
- > transformations occur remains limited. In this paper, we simulate
- > an agent-based model in which agents choose between maintaining
- > the …
+ > Over the past four years, self-testing strategies have been an
+ > impactful tool for countries’ response to the COVID-19 pandemic,
+ > especially early on to mitigate the spread when vaccination and
+ > treatment options were limited. We used an agent-based
+ > mathematical mod …
## Code of Conduct