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Reading large VCF files #2

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jcgrenier opened this issue Dec 22, 2021 · 0 comments
Open

Reading large VCF files #2

jcgrenier opened this issue Dec 22, 2021 · 0 comments

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@jcgrenier
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Hello!
Thanks for this pretty useful tool! We were interested using your package to compute the R2 value after merging multiple imputed datasets. However, it takes a really long time to read the merged vcf file, since it contains more than 30,000 samples. Would there be a way to parallelize the reading using the vcftobd command? Otherwise, what would you recommend for my needs?

Thanks a lot for your help?
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@jcgrenier