AbstractMCMC fixes, rename some files, and update manifests #399
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
@willtebbutt can you create a branch from this repo rather than your fork? The CI setup only runs on branches within this repo. |
|
I believe I need additional permissions in order to do this (I created the fork to work around not having said permissions) |
|
You should have access now. |
|
@yebai this looks to be merge-able |
devmotion
reviewed
Jul 6, 2023
yebai
added a commit
that referenced
this pull request
Jul 7, 2023
* Add all high level docs from Turing.jl * Fix some permalinks. * Converted Quickstart doc * Converted contributing pages to jmd * add project files * Disable evaluating style examples * Update and rename index.md to index.jmd * Rename index.jmd to using-turing.jmd * fix formatting for guide.md * Fixed formatting. * Update tutorials/for-developers-interface/interface.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * update sample viz * add dummy julia code block to enable jmd building * Bugfix for negative variance. * More conversions * Added dependencies and changed directory names * Fixed dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * other tutorials * other tutorials * other tutorials * fix merge conflict with master * some edits to advanced * remove weave from deps * improve compiler * added julia formatting for a block which it was missing (#398) Co-authored-by: Hong Ge <[email protected]> * AbstractMCMC fixes, rename some files, and update manifests (#399) * abstract-mcmc * Rename files * no empty cell + hyperlink to bishop (#400) * add numeric prefix to docs * triger rebuild * add Distributions to deps * minor fixes * Minor edits * Update tutorials/docs-12-using-turing-guide/using-turing-guide.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/docs-09-using-turing-advanced/advanced.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * fix var name typo * Don't eval `distributed` and `optim` code chunks * Update using-turing-guide.jmd * Remove hardcoded output. --------- Co-authored-by: Colton Botta <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Will Tebbutt <[email protected]> Co-authored-by: Xianda Sun <[email protected]>
yebai
added a commit
that referenced
this pull request
Oct 19, 2023
* Add all high level docs from Turing.jl * Fix some permalinks. * Converted Quickstart doc * Converted contributing pages to jmd * add project files * Disable evaluating style examples * Update and rename index.md to index.jmd * Rename index.jmd to using-turing.jmd * fix formatting for guide.md * Fixed formatting. * Update tutorials/for-developers-interface/interface.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * update sample viz * add dummy julia code block to enable jmd building * Bugfix for negative variance. * More conversions * Added dependencies and changed directory names * Fixed dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * other tutorials * other tutorials * other tutorials * fix merge conflict with master * some edits to advanced * remove weave from deps * improve compiler * added julia formatting for a block which it was missing (#398) Co-authored-by: Hong Ge <[email protected]> * AbstractMCMC fixes, rename some files, and update manifests (#399) * abstract-mcmc * Rename files * no empty cell + hyperlink to bishop (#400) * add numeric prefix to docs * triger rebuild * add Distributions to deps * minor fixes * Minor edits * Update tutorials/docs-12-using-turing-guide/using-turing-guide.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/docs-09-using-turing-advanced/advanced.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * docs draft * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * upd branch * env * format * better name * undoing rename * undoing fck up * working on Pathfinder example * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * citations * no propaganda * flesing out the examples * format * more concise * format * advancedMH * for devs * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * bug * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * upd * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update external-samplers.jmd * update manifest.toml * Update external-samplers.jmd * update manifest file * bug * upd deps * Revert "upd deps" This reverts commit 32284d5. * bump manifesto * nearly there * bump turing * slight formatting error --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Colton Botta <[email protected]> Co-authored-by: Hong Ge <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Will Tebbutt <[email protected]>
yebai
added a commit
that referenced
this pull request
Oct 19, 2023
* Add all high level docs from Turing.jl * Fix some permalinks. * Converted Quickstart doc * Converted contributing pages to jmd * add project files * Disable evaluating style examples * Update and rename index.md to index.jmd * Rename index.jmd to using-turing.jmd * fix formatting for guide.md * Fixed formatting. * Update tutorials/for-developers-interface/interface.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * update sample viz * add dummy julia code block to enable jmd building * Bugfix for negative variance. * More conversions * Added dependencies and changed directory names * Fixed dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * other tutorials * other tutorials * other tutorials * fix merge conflict with master * some edits to advanced * remove weave from deps * improve compiler * added julia formatting for a block which it was missing (#398) Co-authored-by: Hong Ge <[email protected]> * AbstractMCMC fixes, rename some files, and update manifests (#399) * abstract-mcmc * Rename files * no empty cell + hyperlink to bishop (#400) * add numeric prefix to docs * triger rebuild * add Distributions to deps * minor fixes * Minor edits * Update tutorials/docs-12-using-turing-guide/using-turing-guide.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/docs-09-using-turing-advanced/advanced.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * docs draft * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * upd branch * env * format * better name * undoing rename * undoing fck up * working on Pathfinder example * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * citations * no propaganda * flesing out the examples * format * more concise * format * advancedMH * for devs * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * bug * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * upd * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update external-samplers.jmd * update manifest.toml * Update external-samplers.jmd * update manifest file * bug * upd deps * Revert "upd deps" This reverts commit 32284d5. * bump manifesto * nearly there * bump turing * slight formatting error * folder name conv * folder name conv * rm old files --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Colton Botta <[email protected]> Co-authored-by: Hong Ge <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Will Tebbutt <[email protected]>
yebai
added a commit
that referenced
this pull request
Oct 20, 2023
* Add all high level docs from Turing.jl * Fix some permalinks. * Converted Quickstart doc * Converted contributing pages to jmd * add project files * Disable evaluating style examples * Update and rename index.md to index.jmd * Rename index.jmd to using-turing.jmd * fix formatting for guide.md * Fixed formatting. * Update tutorials/for-developers-interface/interface.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.md Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * update sample viz * add dummy julia code block to enable jmd building * Bugfix for negative variance. * More conversions * Added dependencies and changed directory names * Fixed dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * Fixing dependencies * other tutorials * other tutorials * other tutorials * fix merge conflict with master * some edits to advanced * remove weave from deps * improve compiler * added julia formatting for a block which it was missing (#398) Co-authored-by: Hong Ge <[email protected]> * AbstractMCMC fixes, rename some files, and update manifests (#399) * abstract-mcmc * Rename files * no empty cell + hyperlink to bishop (#400) * add numeric prefix to docs * triger rebuild * add Distributions to deps * minor fixes * Minor edits * Update tutorials/docs-12-using-turing-guide/using-turing-guide.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/docs-09-using-turing-advanced/advanced.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * docs draft * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * upd branch * env * format * better name * undoing rename * undoing fck up * working on Pathfinder example * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * citations * no propaganda * flesing out the examples * format * more concise * format * advancedMH * for devs * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * bug * Apply suggestions from code review Co-authored-by: Tor Erlend Fjelde <[email protected]> * upd * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update tutorials/15-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update external-samplers.jmd * update manifest.toml * Update external-samplers.jmd * update manifest file * bug * upd deps * Revert "upd deps" This reverts commit 32284d5. * bump manifesto * nearly there * bump turing * slight formatting error * folder name conv * folder name conv * rm old files * hyperlinks in html * Update tutorials/docs-16-using-turing-external-samplers/external-samplers.jmd Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * Update external-samplers.jmd --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Colton Botta <[email protected]> Co-authored-by: Hong Ge <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Will Tebbutt <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.