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To incorporate the PharmGKB API as described in biothings/biothings_explorer#556, we need node normalizer to resolve PharmGKB identifiers for genes, diseases, variants, and chemicals. Examples of each:
To incorporate the PharmGKB API as described in biothings/biothings_explorer#556, we need node normalizer to resolve PharmGKB identifiers for genes, diseases, variants, and chemicals. Examples of each:
Gene: BRAF - https://www.pharmgkb.org/gene/PA25408
Disease: leukemia - https://www.pharmgkb.org/disease/PA444750
Variant: rs113488022 - https://www.pharmgkb.org/variant/PA166157522
Chemical: imatinib - https://www.pharmgkb.org/chemical/PA10804
Mappings can be found in the "Primary Data" section of https://www.pharmgkb.org/downloads
Related issue to add prefixes to biolink model: biolink/biolink-model#1236
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