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README.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<h1 id="course-materials-for-ee283-winter-2017">Course materials for EE283, Winter 2017</h1>
<h2 id="tentative-overview-for-first-5-weeks">(Tentative) overview for first 5 weeks</h2>
<ul>
<li>Week 1: Quick tour of Python + git/<a href="http://github.com">GitHub</a>. Mention Anaconda/Bioconda.</li>
<li>Week 2: “Advanced” HPC tips and tricks.</li>
<li>Week 3: Rstudio and/or Jupyter notebooks: the “lab notebooks” of computational biology. Publication-quality graphics using ggplot2.</li>
<li>Week 4: Makefiles and automation.</li>
<li>Week 5: General issues in dealing with “big data”. Out-of-memory analysis using SQLite</li>
</ul>
<p>Materials may be found <a href="http://www.molpopgen.org/AdvancedInformatics2017">here</a></p>
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