Will Picky identify intragenic rearrangements?

[wolfgangrumpf]

I'm trying to find intragenic rearrangements using PacBio RNAseq reads....specifically we are looking for areas where within a gene the exons are not in the canonical order, e.g. instead of 1 2 3 4 5 we see 1 3 5 2 4. Will Picky detect that sort of a variant?