From d68121d804adcfce26ed0b1d6af5aa1201b28d37 Mon Sep 17 00:00:00 2001 From: Dhruv Date: Wed, 20 Sep 2023 09:52:22 +0200 Subject: [PATCH] refactor: Creating job_scheduler package to run the reconstruction pipeline from Amazon ECS --- aws_deployment/infrastructure/ci_pipeline.py | 18 - bacalau/Dockerfile | 19 - bacalau/bacalau_script.py | 158 -- bacalau/broker/__init__.py | 1 - bacalau/broker/bacalhauConsumer.py | 84 - bacalau/broker/bacalhauProducer.py | 58 - bacalau/model.py | 32 - bacalau/poetry.lock | 1552 ----------------- bacalau/poetry.toml | 2 - bacalau/pyproject.toml | 16 - bacalau/requirements.txt | 2 - bacalau/setup.py | 14 - bacalau/start_server.sh | 2 - bacalau/test.sh | 2 - bacalau/test/__init__.py | 1 - bacalau/test/bacalau_test.py | 48 - bacalau/test/mock/__init__.py | 0 bacalau/test/mock/bot.py | 55 - bots/__init__.py | 2 - job_scheduler/Dockerfile | 20 + job_scheduler/README.md | 2 + job_scheduler/conftest.py | 3 + job_scheduler/main.py | 22 + job_scheduler/pyproject.toml | 23 + job_scheduler/requirements.txt | 6 + job_scheduler/route/bacalau_script.py | 115 ++ job_scheduler/setup.py | 44 + job_scheduler/tests/job_scheduler_test.py | 34 + .../src/compute_normals.cpp | 79 + 29 files changed, 348 insertions(+), 2066 deletions(-) delete mode 100644 aws_deployment/infrastructure/ci_pipeline.py delete mode 100644 bacalau/Dockerfile delete mode 100644 bacalau/bacalau_script.py delete mode 100644 bacalau/broker/__init__.py delete mode 100644 bacalau/broker/bacalhauConsumer.py delete mode 100644 bacalau/broker/bacalhauProducer.py delete mode 100644 bacalau/model.py delete mode 100644 bacalau/poetry.lock delete mode 100644 bacalau/poetry.toml delete mode 100644 bacalau/pyproject.toml delete mode 100644 bacalau/requirements.txt delete mode 100644 bacalau/setup.py delete mode 100755 bacalau/start_server.sh delete mode 100755 bacalau/test.sh delete mode 100644 bacalau/test/__init__.py delete mode 100644 bacalau/test/bacalau_test.py delete mode 100644 bacalau/test/mock/__init__.py delete mode 100644 bacalau/test/mock/bot.py delete mode 100644 bots/__init__.py create mode 100644 job_scheduler/Dockerfile create mode 100644 job_scheduler/README.md create mode 100644 job_scheduler/conftest.py create mode 100644 job_scheduler/main.py create mode 100644 job_scheduler/pyproject.toml create mode 100644 job_scheduler/requirements.txt create mode 100644 job_scheduler/route/bacalau_script.py create mode 100644 job_scheduler/setup.py create mode 100644 job_scheduler/tests/job_scheduler_test.py create mode 100644 surface_reconstruction/src/compute_normals.cpp diff --git a/aws_deployment/infrastructure/ci_pipeline.py b/aws_deployment/infrastructure/ci_pipeline.py deleted file mode 100644 index bb23c34..0000000 --- a/aws_deployment/infrastructure/ci_pipeline.py +++ /dev/null @@ -1,18 +0,0 @@ -# import aws_cdk as cdk -# from constructs import Construct -# from aws_cdk.pipelines import CodePipeline, CodePipelineSource, ShellStep - - -# class lidarHdStack(cdk.Stack): -# def __init__(self, scope: Construct, construct_id: str, **kwargs)-> None : -# super().__init__(scope, construct_id, **kwargs) -# pipeline = CodePipeline(self, "Pipeline", -# pipeline_name="MyPipeline", -# synth=ShellStep("Synth", -# input=CodePipelineSource.git_hub("The-Extra-Project/lidarhdpip", "dev-adding-v0.1"), -# commands=["npm install -g aws-cdk", -# "curl -sSL https://install.python-poetry.org | python3 -", -# "poetry update", -# "cdk synth"] -# ) -# ) \ No newline at end of file diff --git a/bacalau/Dockerfile b/bacalau/Dockerfile deleted file mode 100644 index e52d615..0000000 --- a/bacalau/Dockerfile +++ /dev/null @@ -1,19 +0,0 @@ -FROM python:3.11 as build -RUN mkdir -p /usr/src/app/bacalau/ -COPY pyproject.toml /usr/src/app/bacalau/pyproject.toml - -WORKDIR /usr/src/app/bacalau/ -RUN curl -sSL https://install.python-poetry.org | python3 - && /root/.local/bin/poetry config virtualenvs.create false - -RUN PATH="/root/.local/bin:$PATH" && poetry --version - -RUN /root/.local/bin/poetry install - -FROM build as test - -COPY --from=build /usr/src/app/bacalau /usr/src/app/bacalau - -WORKDIR / -COPY . ./usr/src/app/bacalhau/ - -ENTRYPOINT ["python3", "/usr/src/app/bacalhau/bacalau_script.py"] \ No newline at end of file diff --git a/bacalau/bacalau_script.py b/bacalau/bacalau_script.py deleted file mode 100644 index 004ea7a..0000000 --- a/bacalau/bacalau_script.py +++ /dev/null @@ -1,158 +0,0 @@ -""" -bacalau script that deploys the georender dockerised container on the bacalau. -this will be called by the kafka topic once there is compute bandwidth available. -""" -import json -from model import JobResults, InputParametersPoint -from bacalhau_apiclient.models.deal import Deal -from bacalhau_apiclient.models.job_spec_docker import JobSpecDocker -from bacalhau_apiclient.models.job_spec_language import JobSpecLanguage -from bacalhau_apiclient.models.publisher_spec import PublisherSpec -from bacalhau_apiclient.models.spec import Spec -from bacalhau_apiclient.models.storage_spec import StorageSpec -from bacalhau_sdk.api import submit -from bacalhau_sdk.config import get_client_id -from bacalhau_sdk.api import results, states -from dotenv import load_dotenv, dotenv_values -import sys -import pprint - -load_dotenv(dotenv_path='.env') -config = dotenv_values(dotenv_path='.env') - - -def createJobBacalauPoint(parameter: InputParametersPoint) -> any: - ''' - pulls the docker image of georender and executes it on the bacalau compute network - for example, in the case of the georender, it will be as follows: - params[0]: is the X coordinate of the geometric coordinates - params[1]: is the Y coordinate of the geometric coordinates - params[2]: username of the discord that wants to execute the job - params[3]: cid link for the shp file. - params[4] cid link of pipeline template. - params[5]: filename of the shp file that you want to render. - params[6]: name of the docker image. - ''' - - # dockerImg: str, params:InputParametersPoint - - coordX = parameter.coordX - coordY = parameter.coordY - username = parameter.username - ipfs_shp_details = parameter.ipfs_image - ipfs_pipeline_details = parameter.ipfs_pipeline - shpFile = parameter.filename_shp - dockerImg = parameter.dockerimage - - InputJob = dict( - APIBeta= 'v0.1', - ClientID=get_client_id(), - Spec=Spec( - engine="Docker", - verifier="Noop", - publisher_spec= PublisherSpec("ipfs"), - docker=JobSpecDocker( - image=dockerImg, - entrypoint=[coordX, coordY, username, ipfs_shp_details,ipfs_pipeline_details, shpFile] - ), - language=JobSpecLanguage(job_context=None), - wasm=None, - resources=None, - timeout=1800, - outputs=[ - StorageSpec( - storage_source="IPFS", - name="outputs", - path="/outputs", - ) - ], - deal=Deal(concurrency=1, confidence=0, min_bids=0), - do_not_track=False, - ), - ) - - try: - job_json_details = json.loads(submit(InputJob)) - print(job_json_details) - #jobresults = JobComputation(job) - - return job_json_details - except SystemError as s: - print(s) - -def listJobs() -> JobResults: - """ - fetches the status current status of listed jobs in the network - clientId: is the generated clientId of the user. - """ - try: - resultingJobs = JobResults(states(get_client_id())) - return resultingJobs - except SystemError as s: - print(s) - -def getJobResults(clientId: str): - """ - fetches the result of the jobs that are executed for the given client and stored in ipfs. - this will be called by the trigger bot periodically to get the results. - clientId: is the user identifier. - jobId: is the job identifier. - """ - - try: - resultData = results(clientId) - vectorize_outputs(resultData) - except Exception as h: - print(h) - -def vectorize_outputs(data:dict): - """ - gets the succinct output results from the json file. - - Parameters - ----------- - jsonOutput is the json format resultinng from the results api function. - - Returns the formatted response from - - """ - """ - {'results': [{'data': {'cid': 'QmYEqqNDdDrsRhPRShKHzsnZwBq3F59Ti3kQmv9En4i5Sw', - 'metadata': None, - 'name': 'job-710a0bc2-81d1-4025-8f80-5327ca3ce170-shard-0-host-QmYgxZiySj3MRkwLSL4X2MF5F9f2PMhAE3LV49XkfNL1o3', - 'path': None, - 'source_path': None, - 'storage_source': 'IPFS', - 'url': None}, - 'node_id': 'QmYgxZiySj3MRkwLSL4X2MF5F9f2PMhAE3LV49XkfNL1o3', - 'shard_index': None}] - - } - """ - vectorized_result = {} - results = data["results"] - - for params in results: - param_dict = params["data"] - vectorized_result[param_dict["name"]] = { - "cid": results["cid"], - "metadata": results["metadata"], - "path": results["path"], - "source_path": results["source_path"], - "storage_source": results["storage_source"], - "url": results["url"], - "node_id": params["node_id"] - } - - - pprint.pprint(vectorized_result,indent=4) - - - -if __name__ == "__main__": - inputParams: InputParametersPoint = InputParametersPoint - if (test == True): - ## passing the parameters via the cli params (for testing) - [inputParams.coordX , inputParams.coordY, inputParams.username, inputParams.ipfs_image, inputParams.dockerimage] = sys.argv[1:6] - print( ''+"parameters finalized: {},{},{},{},{} ".format(inputParams.coordX , inputParams.coordY, inputParams.username, inputParams.ipfs_image, inputParams.dockerimage)) - createJobBacalauPoint(inputParams) \ No newline at end of file diff --git a/bacalau/broker/__init__.py b/bacalau/broker/__init__.py deleted file mode 100644 index d05603b..0000000 --- a/bacalau/broker/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"bacalau adapters for kafka message streaming and getting back the results" \ No newline at end of file diff --git a/bacalau/broker/bacalhauConsumer.py b/bacalau/broker/bacalhauConsumer.py deleted file mode 100644 index f7cc93b..0000000 --- a/bacalau/broker/bacalhauConsumer.py +++ /dev/null @@ -1,84 +0,0 @@ -import platform -from kafka import KafkaConsumer -from dotenv import load_dotenv, dotenv_values -#from fastapi import FastAPI, BackgroundTasks -from bacalau.broker.bacalhauProducer import kafka_producer_Job_result -from bacalau_script import createJobBacalauPoint, listJobs , getJobResults -import json -import logging - - -logger = logging.getLogger() -logger.setLevel(logging.INFO) - -log = logging.getLogger("uvicorn") - -#app = FastAPI() - -load_dotenv(dotenv_path='.env') -config = dotenv_values(dotenv_path='.env') - -global consumer - - -consumer = KafkaConsumer( - bootstrap_servers=[config["KAFKA_BROKER_URL"]], - sasl_mechanism='SCRAM-SHA-256', - security_protocol='SASL_SSL', - sasl_plain_username=config["SASL_PLAIN_USERNAME"], - sasl_plain_password=config["SASL_PLAIN_PASSWORD"], - auto_offset_reset='earliest', - consumer_timeout_ms=1000 - ) - -## this function is called repreatedly to consume messages from kafka -#@repeat.every() -def kafka_consume_message_jobCommand_point(background_tasks: BackgroundTasks) -> any: - """ - this allows for messages to be consumed that are transferred by the discord bot - returns true if the message is consumed and the command is executed. - """ - topic = 'bacalhau_compute_job' - - ## TODO: fetch the different channel name using the settings defined like in src/stashed_config - consumer.subscribe(['bacalhau_compute_job']) - - ## only consume the first message from the given queue. - parameter = consumer.poll(timeout_ms=100) - - logger.info('now fetching the response of corresponding key') - - # now parsing the parameter key and return all the values - - [Xcoordinate, Ycoord, ipfs, dockername, username] = parameter - - submit_spec = createJobBacalauPoint(Xcoordinate, Ycoord, ipfs, dockername, username) - - print("job has started for: {}{}{}".format(Xcoordinate, Ycoord, ipfs, dockername, username)) - - #background_tasks.add_task(func=kafka_producer_Job_result) - - - -def kafka_consume_result_status(keyID: str): - topic = 'bacalau_list_jobs' - - consumer.subscribe(topic) - logger.info('now fetching the response of keyID provided by the user') - - for message in consumer: - if(message[keyID].key == keyID): - current_message_offset = message[keyID].value - break - - consumer.seek(partition=topic, offset=current_message_offset) - - parameters = json.loads(consumer.poll(topic)) - [cid, nodeId, path] = parameters - - -test = True - -if __name__ == "__main__": - - kafka_consume_message_jobCommand_point() \ No newline at end of file diff --git a/bacalau/broker/bacalhauProducer.py b/bacalau/broker/bacalhauProducer.py deleted file mode 100644 index 67ded78..0000000 --- a/bacalau/broker/bacalhauProducer.py +++ /dev/null @@ -1,58 +0,0 @@ -from dotenv import load_dotenv, dotenv_values -from kafka import KafkaProducer -import time -import logging -import sys -from bacalau.bacalau_script import * - - -load_dotenv(dotenv_path='../../.env') -config = dotenv_values(dotenv_path='../../.env') - -logger = logging.getLogger("discord_bot") -logger.setLevel(logging.INFO) - - -global producer - -producer = KafkaProducer( - bootstrap_servers=[config["KAFKA_BROKER_URL"]], - sasl_mechanism='SCRAM-SHA-256', - security_protocol='SASL_SSL', - sasl_plain_username=config["SASL_PLAIN_USERNAME"], - sasl_plain_password=config["SASL_PLAIN_PASSWORD"], -) - -## kafka compute operations: -def kafka_producer_Job_result(): - """ - returns the result to the given user georendered job from bacalau script. - it takes the output of the resulting user jobID that is generated from the bacalhau consumer call of application - """ - ## fetching the latest job result if available - if (listJobs): - jobId = listJobs()['-1'] - - jobResult = getJobResults(jobId) - - logger.info("Sending Job Result to Kafka Topic") - - time.sleep(5) - result = producer.send( - topic="bacalhau_result_job", - value= JobResults.encode('utf-8'), - ) - logger.info("send the message to bacalhau service") - print("Sending msg \"{}\"".format(result)) - - return True - -def kafka_produce_list_jobs(): - jobLists = listJobs() - logger.info("Sending Job Lists to Kafka Topic") - transfer = producer.send( - topic="bacalau_result_job", - value= jobLists.encode('utf-8'), - ) - logger.info("Send the resulting jobs to the broker of format: {}, with id:".format(transfer)) - diff --git a/bacalau/model.py b/bacalau/model.py deleted file mode 100644 index 2cec1a0..0000000 --- a/bacalau/model.py +++ /dev/null @@ -1,32 +0,0 @@ -from pydantic import BaseModel -from typing import List -from enum import Enum -from typing import Union, List - 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-1,16 +0,0 @@ -[tool.poetry] -name = "bacalau" -version = "0.0.1" -description = "wrapper script on top of bacalau sdk to schedule the compute jobs of the given georendering pipeline" -readme = "./README.md" -authors = ["Dhruv"] - -[tool.poetry.dependencies] -python = ">=3.8.1,<3.9.7 || >3.9.7,<3.12" -bacalhau-sdk = "^1.0.3" -python-dotenv = "^1.0.0" -pydantic = "^2.3.0" -kafka-python = "^2.0.2" -pytest = "^7.4.0" -fastapi = "^0.103.0" - diff --git a/bacalau/requirements.txt b/bacalau/requirements.txt deleted file mode 100644 index 5e664c8..0000000 --- a/bacalau/requirements.txt +++ /dev/null @@ -1,2 +0,0 @@ -fastapi -bacalhau_apiclient diff --git a/bacalau/setup.py b/bacalau/setup.py deleted file mode 100644 index 146d1c8..0000000 --- a/bacalau/setup.py +++ /dev/null @@ -1,14 +0,0 @@ -from setuptools import find_packages, setup - - - -setup( - name="bacalau", - version= "0.1.0", - description="package for scheduling bacalau jobs and getting the result", - url="https://github.com/author_name/project_urlname/", - long_description_content_type="text/markdown", - author="author_name", - packages=find_packages(exclude=["tests", ".github"]), - -) \ No newline at end of file diff --git a/bacalau/start_server.sh b/bacalau/start_server.sh deleted file mode 100755 index d9a1248..0000000 --- a/bacalau/start_server.sh +++ /dev/null @@ -1,2 +0,0 @@ -#!/bin/bash -uvicorn bacalau_script:app \ No newline at end of file diff --git a/bacalau/test.sh b/bacalau/test.sh deleted file mode 100755 index 661e1d2..0000000 --- a/bacalau/test.sh +++ /dev/null @@ -1,2 +0,0 @@ -#!/bin/bash -pytest bacalau_test.py diff --git a/bacalau/test/__init__.py b/bacalau/test/__init__.py deleted file mode 100644 index dc1eb91..0000000 --- a/bacalau/test/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"test pacakge for the bacalau script" \ No newline at end of file diff --git a/bacalau/test/bacalau_test.py b/bacalau/test/bacalau_test.py deleted file mode 100644 index 1107f9f..0000000 --- a/bacalau/test/bacalau_test.py +++ /dev/null @@ -1,48 +0,0 @@ -import pytest -from model import InputParametersPoint -from bacalau.test.mock.bot import kafka_producer_mock_job_message -from bacalau_script import createJobBacalauPoint, listJobs, getJobResults, app -from model import JobComputation, JobResults -from bacalau.broker.bacalhauConsumer import * -from bacalau.broker.bacalhauProducer import * - - -testParams = InputParametersPoint() -testParams.coordX = "34" -testParams.coordY = "42" -testParams.username = "test" -testParams.ipfs_image = "" -testParams.ipfs_pipeline = "" -testParams.dockerimage = "devextralabs/georender" - -params = InputParametersPoint(testParams.coordX, testParams.coordY, testParams.username, testParams.ipfs_image, testParams.ipfs_pipeline,testParams.dockerimage) - -def test_job_computation(): - assert createJobBacalauPoint(parameter=params) is not None - -def test_list_jobs(): - assert listJobs() is not None - - - -def test_get_result(): - try: - assert test_get_result() is not None - except Exception as e: - print(e) - -##now testing the kafka messaging stream -def test_kafka_submit_job(): - - kafka_producer_mock_job_message() - time.sleep(4) - kafka_consume_message_jobCommand_point() - assert consumer.end_offsets() is None - -def test_kafka_generate_result(): - offset_id = consumer.position('bacalhau-compute-job') - kafka_producer_Job_result() - time.sleep(4) - kafka_consume_result_status("test") - - \ No newline at end of file diff --git a/bacalau/test/mock/__init__.py b/bacalau/test/mock/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/bacalau/test/mock/bot.py b/bacalau/test/mock/bot.py deleted file mode 100644 index def017e..0000000 --- a/bacalau/test/mock/bot.py +++ /dev/null @@ -1,55 +0,0 @@ -from dotenv import load_dotenv, dotenv_values -from kafka import KafkaProducer -from kafka.errors import KafkaError -import time -import logging -import sys -from kafka.producer import future - -load_dotenv(dotenv_path='.env') -config = dotenv_values(dotenv_path='.env') - - -logger = logging.getLogger("discord_bot") -logger.setLevel(logging.INFO) - - -global producer - - -producer = KafkaProducer( - bootstrap_servers=[config["KAFKA_BROKER_URL"]], - sasl_mechanism='SCRAM-SHA-256', - security_protocol='SASL_SSL', - sasl_plain_username=config["SASL_PLAIN_USERNAME"], - sasl_plain_password=config["SASL_PLAIN_PASSWORD"], -) - - - -## kafka compute operations: -def kafka_producer_mock_job_message( - Xcoord: str, Ycoord: str, username: str, ipfs_template_cid: str, ipfs_pipeline_cid: str -): - """ - mocks the messaging from the discord bot to kafka broker. - """ - - try: - result: KafkaProducer.send = producer.send( - topic="bacalhau_compute_job", - value=(Xcoord + ',' + Ycoord +',' + username + ',' + ipfs_pipeline_cid + ','+ ipfs_template_cid).encode('utf-8'), - key= bytes(counter) - ) - print("send the message to bacalhau service") - print("Sending msg \"{}\"".format(result)) - except KafkaError as k: - print(k) - - counter = 0 - return True - - -if __name__ == '__main__': - kafka_producer_mock_job_message() - \ No newline at end of file diff --git a/bots/__init__.py b/bots/__init__.py deleted file mode 100644 index e54fd1a..0000000 --- a/bots/__init__.py +++ /dev/null @@ -1,2 +0,0 @@ - -""" the core package to fecititate exchange between the docker and message.""" \ No newline at end of file diff --git a/job_scheduler/Dockerfile b/job_scheduler/Dockerfile new file mode 100644 index 0000000..6df061f --- /dev/null +++ b/job_scheduler/Dockerfile @@ -0,0 +1,20 @@ +FROM ubuntu:22.04 as build + + +WORKDIR /app +RUN apt-get update && apt-get install -y python3-dev pip + +COPY requirements.txt . + +RUN apt-get update + +RUN pip install -r requirements.txt + +COPY . . + +FROM build as run + +COPY --from=build /app/ /app/ + +CMD [ "python3", "main.py" ] + diff --git a/job_scheduler/README.md b/job_scheduler/README.md new file mode 100644 index 0000000..e912a6d --- /dev/null +++ b/job_scheduler/README.md @@ -0,0 +1,2 @@ +# Job scheduler +Server for running the pipeline reconstruction jobs. \ No newline at end of file diff --git a/job_scheduler/conftest.py b/job_scheduler/conftest.py new file mode 100644 index 0000000..06c5e48 --- /dev/null +++ b/job_scheduler/conftest.py @@ -0,0 +1,3 @@ +import sys +sys.path.append("./route") +sys.path.append("./test") \ No newline at end of file diff --git a/job_scheduler/main.py b/job_scheduler/main.py new file mode 100644 index 0000000..069fb64 --- /dev/null +++ b/job_scheduler/main.py @@ -0,0 +1,22 @@ +from fastapi import FastAPI +from fastapi.middleware.cors import CORSMiddleware +import uvicorn +from route import bacalau_script + +app = FastAPI(debug=True) + +# TODO: restriction to only specific origin of requests (for our case its only docker call). +app.add_middleware( + CORSMiddleware +) + +app.include_router(bacalau_script.router) + +@app.get("/") +def entrypoint(): + return {"message": "LidarHD API server is working"} + + + +if __name__ == "__main__": + uvicorn.run(app, host="0.0.0.0", port=8000) \ No newline at end of file diff --git a/job_scheduler/pyproject.toml b/job_scheduler/pyproject.toml new file mode 100644 index 0000000..58cf95b --- /dev/null +++ b/job_scheduler/pyproject.toml @@ -0,0 +1,23 @@ +[build-system] +requires = ["setuptools>=61.0"] +build-backend = "setuptools.build_meta" + + +[project] +name = "job_scheduler" +version = "0.0.1" +authors = [ + { name="Dhruv" } + +] + +description = "example package for job scheduler" +readme = "README.md" +requires-python = ">=3.9" + +classifiers = [ + "Programming Language :: Python :: 3", + "License :: OSI Approved :: MIT License", + "Operating System :: OS Independent", +] + diff --git a/job_scheduler/requirements.txt b/job_scheduler/requirements.txt new file mode 100644 index 0000000..082d182 --- /dev/null +++ b/job_scheduler/requirements.txt @@ -0,0 +1,6 @@ +FastAPI +boto3 +bacalhau_sdk +uvicorn +python-dotenv +httpx \ No newline at end of file diff --git a/job_scheduler/route/bacalau_script.py b/job_scheduler/route/bacalau_script.py new file mode 100644 index 0000000..c7dd3a3 --- /dev/null +++ b/job_scheduler/route/bacalau_script.py @@ -0,0 +1,115 @@ +""" +This script interacts with the API gateway to +- submit the job for the pipeline reconstruction. +- get the status of the jobs submited by the given username. +""" +from fastapi import APIRouter, Request, Response, status +from fastapi.encoders import jsonable_encoder +import boto3 +import json +import os +import logging +import requests +from bacalhau_apiclient.models.storage_spec import StorageSpec +from bacalhau_sdk.api import submit +from bacalhau_sdk.config import get_client_id +from bacalhau_sdk.api import results, states +from dotenv import dotenv_values + +import sys +import pprint + + +logging.getLogger('boto3').setLevel(logging.CRITICAL) +config = dotenv_values(dotenv_path='.env') + +client = boto3.client('ecs', region_name='us-east-1') + +router = APIRouter( + prefix="/jobs", + tags=["bot-service"], + responses={404: {"description": "Not found"}}, +) + +#fargate_ecr_endpoint = "" + +@router.get("/requestJob") +async def runPipeline(request: Request, response: Response): + ''' + It parses the input parameters from requests(consisting of the parameters of the compute job). + then pulls the docker image of reconstruction-pipline and executes it on ECS (which in turn runs the ) + + the input parameters are planned as follows + coordX + coordY + username + ipfs_shp + ipfs_pipeline + shpFile + ''' + + # dockerImg: str, params:InputParametersPoint + + try: + body = await request.json() + if "coordinate" not in body or "ipfs_shp" not in body: + raise Exception("invalid parameters from bot/ message, need to pass parameters") + + params = [] + for param in body["params"]: + params.append(param) + except Exception as e: + response.status_code = status.HTTP_500_INTERNAL_SERVER_ERROR + return {"message": str(e)} + + + try: + + response = client.run_task( + cluster= 'extralabs-dev', + launchType='FARGATE', + taskDefinition='reconstruction-pipeline', + count=1, + networkConfiguration={ + 'awsvpcConfiguration': { + 'subnets': [ + os.enviorn['ECS_SUBNET'], + ], + 'securityGroups': [ + os.environ['ECS_SEC_GROUP'], + ], + 'assignPublicIp': 'ENABLED' + } + } + ) + logging.debug(response) + + except SystemError as s: + print(s) +@router.get("/state/{job_id}") +def get_state(clientID: str, response: Response): + """ + fetches the status current jobs listed by the user on our network + clientId: is the generated clientId of the user (generated after running the user profile). + """ + try: + resultingJobs = states(clientID) + return resultingJobs + except SystemError as s: + response.status_code = status.HTTP_500_INTERNAL_SERVER_ERROR + return {"message": str(e)} +@router.get("/job/{job_id}") +def getJobResults(jobId: str, response: Response): + """ + fetches the result of the jobs that are executed for the given client and stored in ipfs. + this will be called by the trigger bot periodically to get the results. + clientId: is the user identifier. + jobId: is the job identifier. + """ + + try: + result = results(job_id=jobId) + return result + except Exception as h: + response.status_code = status.HTTP_500_INTERNAL_SERVER_ERROR + return {"message": str(h)} \ No newline at end of file diff --git a/job_scheduler/setup.py b/job_scheduler/setup.py new file mode 100644 index 0000000..6e99487 --- /dev/null +++ b/job_scheduler/setup.py @@ -0,0 +1,44 @@ +from setuptools import setup +import io +import os + +def read(*paths, **kwargs): + """Read the contents of a text file safely. + >>> read("project_name", "VERSION") + '0.1.0' + >>> read("README.md") + ... + """ + + content = "" + with io.open( + os.path.join(os.path.dirname(__file__), *paths), + encoding=kwargs.get("encoding", "utf8"), + ) as open_file: + content = open_file.read().strip() + return content + + + +def read_requirements(path): + return [ + line.strip() + for line in read(path).split("\n") + if not line.startswith(('"', "#", "-", "git+")) + ] + + + + +setup( + name="job_scheduler", + version="0.0.1", + author="", + description="Job scheduler of surface reconstruction pipeline running bacalhau jobs", + url="", + packages=['job_scheduler'] + + +) + + diff --git a/job_scheduler/tests/job_scheduler_test.py b/job_scheduler/tests/job_scheduler_test.py new file mode 100644 index 0000000..a21d57a --- /dev/null +++ b/job_scheduler/tests/job_scheduler_test.py @@ -0,0 +1,34 @@ +import pytest +import requests +from fastapi.testclient import TestClient +from fastapi import Request +import sys + +from route.bacalau_script import router +from pydantic import BaseModel + +client = TestClient(router) + +class Request(BaseModel): + xcoord: str + ycoord: str + ipfs_shp:str + template_name: str + reconstruction_flag: int + + +def create_task(): + + parameters : Request = { + "xcoord": '34', + "ycoord": "22", + "ipfs_shp": "QmW3714d18125599581345", + "template_name":"pipeline_template", + "reconstruction_flag": '0' + } + + response = client.get("/jobs/requestJob", params=parameters) + + assert response.status_code == 200 + + \ No newline at end of file diff --git a/surface_reconstruction/src/compute_normals.cpp b/surface_reconstruction/src/compute_normals.cpp new file mode 100644 index 0000000..a505fae --- /dev/null +++ b/surface_reconstruction/src/compute_normals.cpp @@ -0,0 +1,79 @@ +#include +#include +#include +#include +#include + + +using Kernel = CGAL::Simple_cartesian; +using Point_3 = Kernel::Point_3; +using Vector_3 = Kernel::Vector_3; +using Point_with_info = std::tuple; +using Point_map = CGAL::Nth_of_tuple_property_map<0, Point_with_info>; +using Normal_map = CGAL::Nth_of_tuple_property_map<1, Point_with_info>; +using Scan_angle_map = CGAL::Nth_of_tuple_property_map<2, Point_with_info>; +using Scanline_id_map = CGAL::Nth_of_tuple_property_map<3, Point_with_info>; + + +void dump (const char* filename, const std::vector& points) +{ + std::ofstream ofile (filename, std::ios::binary); + CGAL::IO::set_binary_mode(ofile); + CGAL::IO::write_PLY + (ofile, points, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map())); +} +int main (int argc, char** argv) +{ + std::string fname (argc > 1 ? argv[1] : "data/urban.las"); + std::vector points; + std::cerr << "Reading input file " << fname << std::endl; + std::ifstream ifile (fname, std::ios::binary); + if (!ifile || + !CGAL::IO::read_LAS_with_properties + (ifile, std::back_inserter (points), + CGAL::IO::make_las_point_reader (Point_map()), + std::make_pair (Scan_angle_map(), + CGAL::IO::LAS_property::Scan_angle()), + std::make_pair (Scanline_id_map(), + CGAL::IO::LAS_property::Scan_direction_flag()))) + { + std::cerr << "Can't read " << fname << std::endl; + return EXIT_FAILURE; + } + std::cerr << "Estimating normals" << std::endl; + CGAL::jet_estimate_normals + (points, 12, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map())); + std::cerr << "Orienting normals using scan angle and direction flag" << std::endl; + CGAL::scanline_orient_normals + (points, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map()). + scan_angle_map (Scan_angle_map()). + scanline_id_map (Scanline_id_map())); + dump("out_angle_and_flag.ply", points); + std::cerr << "Orienting normals using scan direction flag only" << std::endl; + CGAL::scanline_orient_normals + (points, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map()). + scanline_id_map (Scanline_id_map())); + dump("out_flag.ply", points); + std::cerr << "Orienting normals using scan angle only" << std::endl; + CGAL::scanline_orient_normals + (points, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map()). + scan_angle_map (Scan_angle_map())); + dump("out_angle.ply", points); + std::cerr << "Orienting normals using no additional info" << std::endl; + CGAL::scanline_orient_normals + (points, + CGAL::parameters::point_map (Point_map()). + normal_map (Normal_map())); + dump("out_nothing.ply", points); + return EXIT_SUCCESS; +}