From c90ab4f41e8b6e69604145c420efa8107a44ab2e Mon Sep 17 00:00:00 2001 From: Mike Stubbington Date: Wed, 4 Jul 2018 13:29:19 +0100 Subject: [PATCH] Improved description of tracer_path option in config file --- README.md | 2 +- tracer.conf | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 77cbd1e..953c63d 100644 --- a/README.md +++ b/README.md @@ -170,7 +170,7 @@ See salmon [documentation](http://salmon.readthedocs.io/en/latest/salmon.html) f tracer_path = /path/to/tracer Location of the cloned TraCeR repository containing tracerlib, test_data, resources etc. Eg. `/user/software/tracer`. -Needed for localisation of resources and test_data if running TraCeR with the tracer binary. +Needed for localisation of resources and test_data if running TraCeR with the tracer binary. Note: this is the path to the **directory** and not the executable. ## Testing TraCeR TraCeR comes with a small dataset in `test_data/` (containing only TCRA or TCRB reads for a single cell) that you can use to test your installation and config file and confirm that all the prerequisites are working. Run it as: diff --git a/tracer.conf b/tracer.conf index 96d25d2..d975c2d 100644 --- a/tracer.conf +++ b/tracer.conf @@ -63,5 +63,5 @@ Hsap = /path/to/kallisto/index_for_Hsap #kmerLen = 31 [tracer_location] -#Path to where TraCeR was originally downloaded +#Path to direcetory where TraCeR was originally downloaded tracer_path = /path/to/tracer