NatureProtocols_step8.txt

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## Parameters for step 8 of the CUBIC Analysis ##
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#
#
# Note: to avoid any problem, please do not
#        change the file structure, only the 
#        parameter values
#
#
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# Folders #
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#
# Folder containing the raw TIFF files
/Users/perrin2/Desktop/CUBIC/raw/
#
# Folder containing the NIfTI-1 files
/Users/perrin2/Desktop/CUBIC/nii_merged/
#
# Folder containing the normalised TIFF files
/Users/perrin2/Desktop/CUBIC/tiff/
#
#
#
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# Brains #
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#
# List of brain IDs (for raw TIFF stack normalisation)
001,002,003
#
# Median intensity for each brain
6064.06,5803.39,6640.76
#
# List of brain IDs (for NIfTI-1 to TIFF export)
sub_003_from_002_normalised
#
# Number of slices for these brains to export (should be same value for all)
169
#
#
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# Log file #
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#
# Name of the log file (including full path)
/Users/perrin2/Desktop/CUBIC/logs/log_NatureProtocols_step8.txt
#
#
#
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## END ##
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