diff --git a/ModelFiles/dependencies.txt b/ModelFiles/dependencies.txt
index 94f39789..4aee4c23 100644
--- a/ModelFiles/dependencies.txt
+++ b/ModelFiles/dependencies.txt
@@ -1,7 +1,7 @@
MATLAB 9.1.0.441655 (R2016b)
libSBML 5.17.0
RAVEN_toolbox 2.1.0
-COBRA_toolbox 3.0.3
+COBRA_toolbox 3.0.4
SBML_level 3
SBML_version 1
fbc_version 2
diff --git a/ModelFiles/txt/yeastGEM.txt b/ModelFiles/txt/yeastGEM.txt
index 0dc07e0e..15a8e56d 100644
--- a/ModelFiles/txt/yeastGEM.txt
+++ b/ModelFiles/txt/yeastGEM.txt
@@ -3953,7 +3953,7 @@ r_4588 s_4200[e] <=> s_3778[c] YNL275W -1000.00 1000.00 0.00
r_4589 s_0796[e] + s_4201[e] <=> s_0794[c] + s_4019[c] YOL122C -1000.00 1000.00 0.00
r_4590 s_0796[e] + s_4202[e] <=> s_0794[c] + s_3801[c] YGR191W -1000.00 1000.00 0.00
r_4591 s_0796[e] + s_4203[e] <=> s_0794[c] + s_3822[c] ( YGL255W or YLR130C ) -1000.00 1000.00 0.00
-r_4592 s_0796[e] + s_4204[e] <=> s_0794[c] + s_4013[c] ( GR191W or YOL130W ) -1000.00 1000.00 0.00
+r_4592 s_0796[e] + s_4204[e] <=> s_0794[c] + s_4013[c] ( YGR191W or YOL130W ) -1000.00 1000.00 0.00
r_4593 s_4200[e] <=> -1000.00 1000.00 0.00
r_4594 s_4201[e] <=> -1000.00 1000.00 0.00
r_4595 s_4202[e] <=> -1000.00 1000.00 0.00
diff --git a/ModelFiles/xml/yeastGEM.xml b/ModelFiles/xml/yeastGEM.xml
index fe198798..7a29d33e 100644
--- a/ModelFiles/xml/yeastGEM.xml
+++ b/ModelFiles/xml/yeastGEM.xml
@@ -192749,7 +192749,7 @@
-
+
Confidence Level: 2
@@ -192958,7 +192958,7 @@
-
+
@@ -194309,7 +194309,6 @@
-
diff --git a/ModelFiles/yml/yeastGEM.yml b/ModelFiles/yml/yeastGEM.yml
index 696b9c14..84332489 100644
--- a/ModelFiles/yml/yeastGEM.yml
+++ b/ModelFiles/yml/yeastGEM.yml
@@ -94018,7 +94018,7 @@
- s_4204: -1
- lower_bound: -1000
- upper_bound: 1000
- - gene_reaction_rule: GR191W or YOL130W
+ - gene_reaction_rule: YGR191W or YOL130W
- annotation: !!omap
- metanetx.reaction: MNXR101553
- sbo: SBO:0000655
@@ -94118,9 +94118,6 @@
- annotation: !!omap
- sbo: SBO:0000627
- genes:
- - !!omap
- - id: GR191W
- - name: GR191W
- !!omap
- id: Q0045
- name: COX1
diff --git a/README.md b/README.md
index 9f4b579f..bc4f6936 100644
--- a/README.md
+++ b/README.md
@@ -10,13 +10,13 @@ This repository contains the current consensus genome-scale metabolic model of _
**GEM Category:** species; **Utilisation:** experimental data reconstruction, multi-omics integrative analysis, _in silico_ strain design, model template; **Field:** metabolic-network reconstruction; **Type of Model:** reconstruction, curated; **Model Source:** YeastMetabolicNetwork; **Omic Source:** genomics, metabolomics; **Taxonomy:** _Saccharomyces cerevisiae_; **Metabolic System:** general metabolism; **Bioreactor**; **Strain:** S288C; **Condition:** aerobic, glucose-limited, defined media;
-* Last update: 2018-12-06
+* Last update: 2019-02-06
* Main Model Descriptors:
|Taxonomy | Template Model | Reactions | Metabolites| Genes |
|:-------:|:--------------:|:---------:|:----------:|:-----:|
-|_Saccharomyces cerevisiae_|[Yeast 7.6](https://sourceforge.net/projects/yeast/)|3963|2691|1150|
+|_Saccharomyces cerevisiae_|[Yeast 7.6](https://sourceforge.net/projects/yeast/)|3963|2691|1149|
This repository is administered by Benjamín J. Sánchez ([@BenjaSanchez](https://github.com/benjasanchez)), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.