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implement auxotrophy-based curation #371

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edkerk opened this issue Sep 11, 2024 · 1 comment · Fixed by #375
Closed

implement auxotrophy-based curation #371

edkerk opened this issue Sep 11, 2024 · 1 comment · Fixed by #375

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@edkerk
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edkerk commented Sep 11, 2024

As detailed in this paper, various curations are proposed to improve Yeast-GEMs performance to predict auxotrophy. The curations are very nicely included detailed here, so can easily be implemented in the yeast-GEM repo.
@edkerk edkerk mentioned this issue Oct 28, 2024
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edkerk commented Oct 28, 2024

Not all curations are exactly implemented as proposed in the paper, as commented in the curation script.

@edkerk edkerk mentioned this issue Nov 23, 2024
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yeast 9.0.2 SysBioChalmers/yeast-GEM
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