diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 5c234106..e0f75312 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -69540,7 +69540,6 @@ - MAM02039m: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000142920" - rxnFrom: "HMRdatabase" - eccodes: "4.1.1.19" - references: "PMID:10800966;PMID:14738999" @@ -70381,7 +70380,7 @@ - MAM02921c: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000064763 or ENSG00000118514 or ENSG00000197601" + - gene_reaction_rule: "ENSG00000197601" - rxnFrom: "HMRdatabase" - eccodes: "1.2.1.-" - references: "PMID:7040832;PMID:10047787" @@ -70399,7 +70398,7 @@ - MAM02922c: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000064763 or ENSG00000118514 or ENSG00000197601" + - gene_reaction_rule: "ENSG00000118514 or ENSG00000197601" - rxnFrom: "HMRdatabase" - eccodes: "1.2.1.-" - references: "PMID:7040832;PMID:10047787" @@ -70646,7 +70645,7 @@ - MAM02925c: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000064763 or ENSG00000118514 or ENSG00000197601" + - gene_reaction_rule: "ENSG00000118514 or ENSG00000197601" - rxnFrom: "HMRdatabase" - eccodes: "1.2.1.-" - references: "PMID:10047787;PMID:7040832" @@ -72915,7 +72914,6 @@ - MAM02152c: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117305" - rxnFrom: "HMRdatabase" - eccodes: "4.4.1.22" - subsystem: @@ -72970,7 +72968,7 @@ - MAM02720c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254" + - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746" - rxnFrom: "HMRdatabase" - eccodes: - "1.2.1.5" @@ -72991,7 +72989,7 @@ - MAM02720m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254" + - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746" - rxnFrom: "HMRdatabase" - eccodes: - "1.2.1.5" @@ -73012,7 +73010,7 @@ - MAM02720c: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254" + - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746" - rxnFrom: "HMRdatabase" - eccodes: "1.2.1.5" - references: "PMID:17379813;PMID:18621017" @@ -73031,7 +73029,7 @@ - MAM02720m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746 or ENSG00000184254" + - gene_reaction_rule: "ENSG00000006534 or ENSG00000108602 or ENSG00000132746" - rxnFrom: "HMRdatabase" - eccodes: "1.2.1.5" - references: "PMID:17379813;PMID:18621017" @@ -73193,7 +73191,7 @@ - MAM02553c: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000147576 or ENSG00000172955 or ENSG00000187758 or ENSG00000196344 or ENSG00000196616 or ENSG00000197894 or ENSG00000198099 or ENSG00000248144" + - gene_reaction_rule: "ENSG00000147576 or ENSG00000172955 or ENSG00000187758 or ENSG00000196344 or ENSG00000197894 or ENSG00000248144" - rxnFrom: "HMRdatabase" - eccodes: "1.1.1.1" - subsystem: @@ -73334,7 +73332,6 @@ - MAM02630c: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000077498" - rxnFrom: "HMRdatabase" - eccodes: "1.14.18.1" - subsystem: @@ -200664,7 +200661,7 @@ - MAM02041l: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000005381 or ENSG00000117592" + - gene_reaction_rule: "ENSG00000005381" - rxnFrom: "Recon3D" - eccodes: "1.11.1.7" - references: "PMID:9164836" @@ -239809,7 +239806,6 @@ - MAM03564c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000123989 and ENSG00000131873) or ENSG00000147408 or ENSG00000169826 or ENSG00000198108" - rxnFrom: "Recon3D" - eccodes: "2.4.1.17" - references: "PMID:19116261" @@ -239827,7 +239823,6 @@ - MAM03563c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000123989 and ENSG00000131873) or ENSG00000147408 or ENSG00000169826 or ENSG00000198108" - rxnFrom: "Recon3D" - eccodes: "2.4.1.17" - references: "PMID:23683503" @@ -264722,9 +264717,6 @@ - !!omap - id: "ENSG00000142892" - name: "PIGK" - - !!omap - - id: "ENSG00000142920" - - name: "AZIN2" - !!omap - id: "ENSG00000142973" - name: "CYP4B1" diff --git a/model/genes.tsv b/model/genes.tsv index 5030bb99..0db8760e 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -1469,7 +1469,6 @@ "ENSG00000142623" "ENST00000375471;ENST00000483501;ENST00000648847;ENST00000460293" "ENSP00000364620" "Q9ULC6" "PADI1" "29943" "peptidyl arginine deiminase 1" "HPAD10;PAD1;PDI;PDI1" "Nucleus;Cytosol" "SwissProt;CellAtlas" "ENSG00000142657" "ENST00000491493;ENST00000487775;ENST00000270776;ENST00000477958;ENST00000483936;ENST00000465632;ENST00000460189;ENST00000493288;ENST00000498356;ENST00000496718" "ENSP00000466358;ENSP00000270776;ENSP00000465311;ENSP00000466156;ENSP00000466574;ENSP00000467362" "P52209" "PGD" "5226" "phosphogluconate dehydrogenase" "" "Cytosol" "SwissProt;CellAtlas" "ENSG00000142892" "ENST00000370812;ENST00000445065;ENST00000487906;ENST00000359130;ENST00000478391" "ENSP00000359848;ENSP00000388854;ENSP00000474518;ENSP00000352041" "Q92643" "PIGK" "10026" "phosphatidylinositol glycan anchor biosynthesis class K" "GPI8;hGPI8" "Endoplasmic reticulum" "SwissProt" -"ENSG00000142920" "ENST00000478635;ENST00000481886;ENST00000475935;ENST00000294517;ENST00000462920;ENST00000471119;ENST00000495135;ENST00000477570;ENST00000483027;ENST00000492420;ENST00000373443;ENST00000497710;ENST00000473089;ENST00000652171;ENST00000484656;ENST00000373440;ENST00000652381;ENST00000373441;ENST00000478204;ENST00000497280;ENST00000492521" "ENSP00000294517;ENSP00000362542;ENSP00000498229;ENSP00000362539;ENSP00000362540" "Q96A70" "AZIN2" "113451" "antizyme inhibitor 2" "ADC;KIAA1945;ODC-p;ODC1L;ODCp" "Endoplasmic reticulum;Golgi apparatus;Nucleus;Cytosol" "SwissProt;CellAtlas" "ENSG00000142973" "ENST00000546128;ENST00000413093;ENST00000640628;ENST00000534708;ENST00000271153;ENST00000371923;ENST00000529715;ENST00000464439;ENST00000371919;ENST00000614163;ENST00000526297;ENST00000452782;ENST00000468637;ENST00000481248;ENST00000497005" "ENSP00000492115;ENSP00000433367;ENSP00000271153;ENSP00000360991;ENSP00000443212;ENSP00000433068;ENSP00000360987;ENSP00000484629;ENSP00000438995" "P13584" "CYP4B1" "1580" "cytochrome P450 family 4 subfamily B member 1" "" "Endoplasmic reticulum" "SwissProt" "ENSG00000143036" "ENST00000446120;ENST00000271227;ENST00000527077;ENST00000529450;ENST00000467909;ENST00000422520;ENST00000532427;ENST00000475883;ENST00000530397;ENST00000532670" "ENSP00000389143;ENSP00000271227;ENSP00000433641;ENSP00000431836;ENSP00000432789;ENSP00000410832;ENSP00000436661;ENSP00000434457;ENSP00000432880" "Q8N4M1" "SLC44A3" "126969" "solute carrier family 44 member 3" "CTL3;MGC45474" "Cell membrane" "DeepLoc2" "ENSG00000143149" "ENST00000354775;ENST00000463610;ENST00000491436;ENST00000461664;ENST00000471457" "ENSP00000346827" "P49189" "ALDH9A1" "223" "aldehyde dehydrogenase 9 family member A1" "ALDH4;ALDH7;ALDH9;E3" "Cytosol" "SwissProt;CellAtlas"