diff --git a/.github/workflows/commentMacaw.md b/.github/workflows/commentMacaw.md index 022ee3d0..dd5bd4d0 100644 --- a/.github/workflows/commentMacaw.md +++ b/.github/workflows/commentMacaw.md @@ -1,9 +1,16 @@ +<<<<<<<< HEAD:.github/workflows/commentMacaw.md This PR has been [automatically tested with GH Actions](https://github.com/SysBioChalmers/Human-GEM/actions/runs/{GH_ACTION_RUN}). Here is the output of the [MACAW](https://github.com/Devlin-Moyer/macaw) test: +======== +This PR has been [automatically tested with GH Actions](https://github.com/SysBioChalmers/Human-GEM/actions/runs/{GH_ACTION_RUN}). Here is the output of the gene essentiality test: +>>>>>>>> develop:.github/workflows/commentsFromTests.md
{TEST_RESULTS}+<<<<<<<< HEAD:.github/workflows/commentMacaw.md This and a more detailed output from MACAW are also committed to `data/macawResults/`. +======== +>>>>>>>> develop:.github/workflows/commentsFromTests.md > _Note: In the case of multiple test runs, this post will be edited._ diff --git a/.github/workflows/commentsFromTests.md b/.github/workflows/commentsFromTests.md deleted file mode 100644 index dd2ba900..00000000 --- a/.github/workflows/commentsFromTests.md +++ /dev/null @@ -1,7 +0,0 @@ -This PR has been [automatically tested with GH Actions](https://github.com/SysBioChalmers/Human-GEM/actions/runs/{GH_ACTION_RUN}). Here is the output of the gene essentiality test: - -
-{TEST_RESULTS} -- -> _Note: In the case of multiple test runs, this post will be edited._ diff --git a/data/testResults/README.md b/data/testResults/README.md index 5b0034ab..160c9df5 100644 --- a/data/testResults/README.md +++ b/data/testResults/README.md @@ -2,7 +2,7 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/macaw) `dead_end_test` and `duplicate_test` tests, and from cell-line specific gene essentiality prediction based on the [Hart _et al._ (2015)](https://doi.org/10.1016/j.cell.2015.11.015) dataset. -The test results shown here were obtained by the GitHub Actions run in **PR #675** (MACAW) and **PR #675** (gene essentiality), and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR. +The test results shown here were obtained by the GitHub Actions run in **PR #882** (MACAW) and **PR #675** (gene essentiality), and will be updated by any subsequent PR. Summary results are shown as a comment in the corresponding PR. ### MACAW: `dead_end_test` Looks for metabolites in Human-GEM that can only be produced by all reactions they participate in or only consumed, then identifies all reactions that are prevented from sustaining steady-state fluxes because of each of these dead-end metabolites. The simplest case of a dead-end metabolite is one that only participates in a single reaction. Also flags all reversible reactions that can only carry fluxes in a single direction because one of their metabolites can either only be consumed or only be produced by all other reactions it participates in.