diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index a1c70245..c21654f1 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -282,3 +282,4 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03322" "" "" "RE3627X" "" "" "HMR_3322" "MNXR124610" "HMR_3322" "RCR14521" "" 0 "" "" "HMR_3322" "MAR03296" "" "" "RE3627M" "" "R-HSA-109343" "HMR_3296" "MNXR124610" "HMR_3296" "RCR12779" "" 0 "" "" "HMR_3296" "MAR04005" "" "" "" "" "" "RE3627C" "" "" "" "" 0 "" "" "RE3627C" +"MAR00965" "" "FAOXC2252053m" "" "" "" "FAOXC2252053m" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053m" diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 7e2852a1..6cb1ad9f 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -221984,30 +221984,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR00965" - - name: "Beta Oxidation of Long Chain Fatty Acid" - - metabolites: !!omap - - MAM00093m: -1 - - MAM00103m: 1 - - MAM01261m: 1 - - MAM01597m: -1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02041m: 1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM02630m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117054 or ENSG00000122971" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "4.2.1.74" - - references: "" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR00968" - name: "Beta Oxidation of Long Chain Fatty Acid" @@ -222046,7 +222022,7 @@ - MAM02553m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000117054 or ENSG00000122971" + - gene_reaction_rule: "(ENSG00000115361 and ENSG00000167969 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000115361 and ENSG00000198721 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000177646 and ENSG00000167969 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000177646 and ENSG00000198721 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029)" - rxnNotes: "" - rxnFrom: "Recon3D" - eccodes: "4.2.1.74" diff --git a/model/reactions.tsv b/model/reactions.tsv index 6197a93d..c5e1c473 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -8273,9 +8273,8 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR00927" "" "FAOXC2051843x" "" "" "" "FAOXC2051843x" "MNXR99344" "" "" "" 0 "" "" "FAOXC2051843x" "MAR00930" "" "FAOXC2242046m" "" "" "" "FAOXC2242046m" "MNXR99349" "" "" "" 0 "" "" "FAOXC2242046m" "MAR00952" "" "FAOXC2242046x" "" "" "" "FAOXC2242046x" "MNXR99350" "" "" "" 0 "" "" "FAOXC2242046x" -"MAR00965" "" "FAOXC2252053m" "" "" "" "FAOXC2252053m" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053m" "MAR00968" "" "FAOXC2252053x" "" "" "" "FAOXC2252053x" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053x" -"MAR00970" "" "FAOXC226205m" "" "" "" "FAOXC226205m" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205m" +"MAR00970" "" "FAOXC226205m" "" "" "" "FAOXC226205m" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205m;MAR00965" "MAR00972" "" "FAOXC226205x" "" "" "" "FAOXC226205x" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205x" "MAR00974" "" "FAOXC240200x" "" "" "" "FAOXC240200x" "MNXR99359" "" "" "" 0 "" "" "FAOXC240200x" "MAR00975" "" "FAOXC241181x" "" "" "" "FAOXC241181x" "MNXR99361" "" "" "" 0 "" "" "FAOXC241181x"