diff --git a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv index c572c2dd..07ca3d73 100644 --- a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv +++ b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv @@ -2212,4 +2212,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00591c" "MAM00591" "" "C14748" "" "CHEBI:34306" "" "" "" "HC02179" "" "MNXM6760" "m00591c" "m00591c" "MAM00591e" "MAM00591" "" "C14748" "" "CHEBI:34306" "" "" "" "HC02179" "" "MNXM6760" "m00591s" "m00591s" "MAM03162c" "MAM03162" "" "C05578" "" "CHEBI:27404" "" "" "" "" "M03162" "MNXM2336" "m03162c" "m03162c" -"MAM03231c" "MAM03231" "" "" "" "CHEBI:57277" "" "" "" "" "3hppa" "" "" "3hppa_c" \ No newline at end of file +"MAM03231c" "MAM03231" "" "" "" "CHEBI:57277" "" "" "" "" "3hppa" "" "" "3hppa_c" +"MAM03540c" "MAM03540" "ddeccrn" "" "" "" "168381" "" "" "" "ddeccrn" "" "" "ddeccrn_c" +"MAM03540e" "MAM03540" "ddeccrn" "" "" "" "168381" "" "" "" "ddeccrn" "" "" "ddeccrn_s" \ No newline at end of file diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index e50aa602..24e8a69c 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -173,4 +173,5 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR06252" "" "" "" "r2346" "" "" "MNXR106235" "HMR_6252" "RCR40129" "" 0 "" "" "HMR_6252" "MAR09733" "R03674" "" "" "" "" "HMR_9733" "MNXR108330" "HMR_9733" "RCR14346" "" 0 "" "" "HMR_9733" "MAR09734" "R04884" "" "" "" "" "HMR_9734" "MNXR109190" "HMR_9734" "RCR14347" "" 0 "RHEA:33516" "RHEA:33515" "HMR_9734" -"MAR10025" "" "" "" "" "" "" "" "" "" "" 0 "" "" "HMR_10025" \ No newline at end of file +"MAR10025" "" "" "" "" "" "" "" "" "" "" 0 "" "" "HMR_10025" +"MAR04506" "" "C120CPT1" "" "" "" "C120CPT1" "" "" "" "" 0 "" "" "C120CPT1" \ No newline at end of file diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index d27f13d9..57cdd748 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -49969,14 +49969,6 @@ - charge: 0 - inchis: "InChI=1/C17H33NO5/c1-5-6-7-8-9-10-14(19)13-17(22)23-15(18(2,3)4)11-12-16(20)21/h14-15,19H,5-13H2,1-4H3" - metFrom: "Recon3D" - - !!omap - - id: "MAM03540c" - - name: "Lauroyl Carnitine" - - compartment: "c" - - formula: "C19H37NO4" - - charge: 0 - - inchis: "InChI=1S/C19H37NO4/c1-5-6-7-8-9-10-11-12-13-14-19(23)24-17(15-18(21)22)16-20(2,3)4/h17H,5-16H2,1-4H3/t17-/m1/s1" - - metFrom: "Recon3D" - !!omap - id: "MAM00042c" - name: "(2E)-dodecenoyl-CoA" @@ -50497,14 +50489,6 @@ - charge: 0 - inchis: "InChI=1/C19H37NO5/c1-5-6-7-8-9-10-11-12-16(21)13-19(24)25-17(14-18(22)23)15-20(2,3)4/h16-17,21H,5-15H2,1-4H3" - metFrom: "Recon3D" - - !!omap - - id: "MAM03540e" - - name: "Lauroyl Carnitine" - - compartment: "e" - - formula: "C19H37NO4" - - charge: 0 - - inchis: "InChI=1S/C19H37NO4/c1-5-6-7-8-9-10-11-12-13-14-19(23)24-17(15-18(21)22)16-20(2,3)4/h17H,5-16H2,1-4H3/t17-/m1/s1" - - metFrom: "Recon3D" - !!omap - id: "MAM03541e" - name: "Dodecenoyl Carnitine" @@ -67935,6 +67919,13 @@ - compartment: "m" - formula: "C24H39O4" - charge: -1 + - !!omap + - id: "MAM01729e" + - name: "dodecanoylcarnitine" + - compartment: "e" + - formula: "C19H37NO4" + - charge: 0 + - inchis: "" - metFrom: "HMRdatabase" - reactions: @@ -110746,9 +110737,9 @@ - upper_bound: 1000 - gene_reaction_rule: "ENSG00000110090 or ENSG00000169169 or ENSG00000205560" - rxnNotes: "" - - rxnFrom: "HMRdatabase" + - rxnFrom: "HMRdatabase;Recon3D" - eccodes: "2.3.1.21" - - references: "" + - references: "PMID:12828998;PMID:9498103;PMID:3955080" - subsystem: - "Carnitine shuttle (cytosolic)" - confidence_score: 0 @@ -239483,24 +239474,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR04506" - - name: "Production of Dodecanoylcarnitine" - - metabolites: !!omap - - MAM01597c: 1 - - MAM02345c: -1 - - MAM02348c: -1 - - MAM03540c: 1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000110090 or ENSG00000169169 or ENSG00000205560" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:12828998;PMID:9498103;PMID:3955080" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR04508" - name: "Production of Dodecenoylcarnitine" @@ -240716,7 +240689,7 @@ - id: "MAR04923" - name: "Exchange of Lauroyl Carnitine" - metabolites: !!omap - - MAM03540e: -1 + - MAM01729e: -1 - lower_bound: -1000 - upper_bound: 1000 - gene_reaction_rule: "" @@ -270716,8 +270689,8 @@ - id: "MAR11266" - name: "Transport of Lauroyl Carnitine" - metabolites: !!omap - - MAM03540c: 1 - - MAM03540e: -1 + - MAM01729c: 1 + - MAM01729e: -1 - lower_bound: -1000 - upper_bound: 1000 - gene_reaction_rule: "" diff --git a/model/metabolites.tsv b/model/metabolites.tsv index 3c22fb35..f09ad7e0 100644 --- a/model/metabolites.tsv +++ b/model/metabolites.tsv @@ -879,8 +879,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00528c" "MAM00528" "mi34p" "C04063" "HMDB0006235" "CHEBI:28858" "440211" "" "" "" "mi34p" "MNXM163431;MNXM2768" "m00528c" "m00528c" "MAM00529c" "MAM00529" "mi3p__D" "C04006" "" "CHEBI:18169" "440194" "" "" "" "mi3p_D" "MNXM540" "m00529c" "m00529c" "MAM00530c" "MAM00530" "mi4p__D" "C03546" "" "CHEBI:18384" "" "" "" "" "mi4p_D" "MNXM2063" "m00530c" "m00530c" -"MAM00531c" "MAM00531" "ppmi1346p" "C18058" "" "" "890" "" "" "" "ppmi1346p" "MNXM34087" "m00531c" "m00531c" -"MAM00531n" "MAM00531" "ppmi1346p" "C18058" "" "" "890" "" "" "" "ppmi1346p" "MNXM34087" "m00531n" "m00531n" +"MAM00531c" "MAM00531" "ppmi1346p" "C18058" "" "" "96024277" "" "" "" "ppmi1346p" "MNXM34087" "m00531c" "m00531c" +"MAM00531n" "MAM00531" "ppmi1346p" "C18058" "" "" "96024277" "" "" "" "ppmi1346p" "MNXM34087" "m00531n" "m00531n" "MAM00532c" "MAM00532" "" "" "" "" "" "LMGP10060005" "" "" "M00532" "MNXM116015" "m00532c" "m00532c" "MAM00533c" "MAM00533" "" "" "" "" "" "" "CE6504" "" "CE6504" "MNXM164037" "m00533c" "m00533c" "MAM00534c" "MAM00534" "" "" "" "" "53481443" "" "CE3481" "" "CE3481" "MNXM32836" "m00534c" "m00534c" @@ -1919,7 +1919,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01227m" "MAM01227" "" "" "" "" "" "" "CE5719" "" "CE5719" "MNXM39477" "m01227m" "m01227m" "MAM01228m" "MAM01228" "" "" "" "" "" "" "CE5847" "" "CE5847" "MNXM39478" "m01228m" "m01228m" "MAM01229c" "MAM01229" "" "" "" "" "" "" "CE3136" "" "CE3136" "MNXM166718" "m01229c" "m01229c" -"MAM01230c" "MAM01230" "retinal_cis_9" "" "" "" "638015" "" "CE5575" "" "retinal_cis_9" "MNXM162775;MNXM2209" "m01230c" "m01230c" +"MAM01230c" "MAM01230" "retinal_cis_9" "" "" "" "6436082" "" "CE5575" "" "retinal_cis_9" "MNXM162775;MNXM2209" "m01230c" "m01230c" "MAM01230r" "MAM01230" "retinal_cis_9" "" "" "" "638015" "" "CE5575" "" "retinal_cis_9" "MNXM162775;MNXM2209" "m01230r" "m01230r" "MAM01231c" "MAM01231" "" "" "" "" "449171" "" "CE1617" "" "CE1617" "MNXM10472" "m01231c" "m01231c" "MAM01231r" "MAM01231" "" "" "" "" "449171" "" "CE1617" "" "CE1617" "MNXM10472" "m01231r" "m01231r" @@ -2924,7 +2924,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01727m" "MAM01727" "" "" "" "" "" "" "" "" "M01727" "" "m01727m" "m01727m" "MAM01727r" "MAM01727" "" "" "" "" "" "" "" "" "M01727" "" "m01727r" "m01727r" "MAM01728c" "MAM01728" "ddcaACP" "C05223" "" "" "" "" "" "HC01394" "ddcaACP" "MNXM5723;MNXM89851" "m01728c" "m01728c" -"MAM01729c" "MAM01729" "" "" "HMDB0002250" "" "168381" "" "" "" "M01729" "MNXM51468;MNXM588354" "m01729c" "m01729c" +"MAM01729c" "MAM01729" "" "" "HMDB0002250" "" "168381" "" "" "" "M01729" "MNXM51468;MNXM588354" "m01729c" "m01729c;MAM03540c" "MAM01729m" "MAM01729" "" "" "HMDB0002250" "" "168381" "" "" "" "M01729" "MNXM51468;MNXM588354" "m01729m" "m01729m" "MAM01729r" "MAM01729" "" "" "HMDB0002250" "" "168381" "" "" "" "M01729" "MNXM51468;MNXM588354" "m01729r" "m01729r" "MAM01730c" "MAM01730" "dolichol__L" "C00381" "" "CHEBI:16091" "" "LMPR03070004" "" "" "dolichol_L" "MNXM147098" "m01730c" "m01730c" @@ -4541,7 +4541,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02646e" "MAM02646" "ocdcea" "C00712" "HMDB0000207" "CHEBI:30823" "5460221" "LMFA01030002" "" "HC00510" "ocdcea" "MNXM306;MNXM727011" "m02646s" "m02646s" "MAM02647c" "MAM02647" "odecoa" "C00510" "HMDB0001322" "CHEBI:15534" "5280355" "LMFA07050055" "" "HC00400" "odecoa" "MNXM1848;MNXM686" "m02647c" "m02647c" "MAM02647m" "MAM02647" "odecoa" "C00510" "HMDB0001322" "CHEBI:15534" "5280355" "LMFA07050055" "" "HC00400" "odecoa" "MNXM1848;MNXM686" "m02647m" "m02647m" -"MAM02647x" "MAM02647" "odecoa" "C00510" "HMDB0001322" "CHEBI:15534" "5280355" "LMFA07050055" "" "HC00400" "odecoa" "MNXM1848;MNXM686" "m02647p" "m02647p" +"MAM02647x" "MAM02647" "odecoa" "C00510" "HMDB0001322" "CHEBI:15534" "5497111" "LMFA07050055" "" "HC00400" "odecoa" "MNXM1848;MNXM686" "m02647p" "m02647p" "MAM02647r" "MAM02647" "odecoa" "C00510" "HMDB0001322" "CHEBI:15534" "5280355" "LMFA07050055" "" "HC00400" "odecoa" "MNXM1848;MNXM686" "m02647r" "m02647r" "MAM02648c" "MAM02648" "eicostet" "" "HMDB0002177" "" "11722594" "LMFA01030176" "" "" "eicostet" "MNXM11474" "m02648c" "m02648c" "MAM02648l" "MAM02648" "eicostet" "" "HMDB0002177" "" "11722594" "LMFA01030176" "" "" "eicostet" "MNXM11474" "m02648l" "m02648l" @@ -4595,17 +4595,17 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02675l" "MAM02675" "hdcea" "C08362" "HMDB0003229" "CHEBI:28716" "445638" "LMFA01030056" "" "HC01981" "hdcea" "MNXM950" "m02675l" "m02675l" "MAM02675r" "MAM02675" "hdcea" "C08362" "HMDB0003229" "CHEBI:28716" "445638" "LMFA01030056" "" "HC01981" "hdcea" "MNXM950" "m02675r" "m02675r" "MAM02675e" "MAM02675" "hdcea" "C08362" "HMDB0003229" "CHEBI:28716" "445638" "LMFA01030056" "" "HC01981" "hdcea" "MNXM950" "m02675s" "m02675s" -"MAM02676c" "MAM02676" "hdcecrn" "" "" "" "11953816" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676c" "m02676c" -"MAM02676m" "MAM02676" "hdcecrn" "" "" "" "11953816" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676m" "m02676m" -"MAM02676r" "MAM02676" "hdcecrn" "" "" "" "11953816" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676r" "m02676r" +"MAM02676c" "MAM02676" "hdcecrn" "" "" "" "129849228" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676c" "m02676c" +"MAM02676m" "MAM02676" "hdcecrn" "" "" "" "129849228" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676m" "m02676m" +"MAM02676r" "MAM02676" "hdcecrn" "" "" "" "129849228" "" "" "HC10854" "hdcecrn" "MNXM8716" "m02676r" "m02676r" "MAM02677c" "MAM02677" "hdcoa" "" "HMDB0006532" "CHEBI:53152" "53477852" "LMFA07050059" "CE0852" "HC10852" "hdcoa" "MNXM781;MNXM90167" "m02677c" "m02677c" "MAM02677m" "MAM02677" "hdcoa" "" "HMDB0006532" "CHEBI:53152" "53477852" "LMFA07050059" "CE0852" "HC10852" "hdcoa" "MNXM781;MNXM90167" "m02677m" "m02677m" "MAM02677x" "MAM02677" "hdcoa" "" "HMDB0006532" "CHEBI:53152" "53477852" "LMFA07050059" "CE0852" "HC10852" "hdcoa" "MNXM781;MNXM90167" "m02677p" "m02677p" "MAM02677r" "MAM02677" "hdcoa" "" "HMDB0006532" "CHEBI:53152" "53477852" "LMFA07050059" "CE0852" "HC10852" "hdcoa" "MNXM781;MNXM90167" "m02677r" "m02677r" -"MAM02678c" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "15667" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678c" "m02678c" -"MAM02678m" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "15667" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678m" "m02678m" -"MAM02678x" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "15667" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678p" "m02678p" -"MAM02678r" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "15667" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678r" "m02678r" +"MAM02678c" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "644109" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678c" "m02678c" +"MAM02678m" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "644109" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678m" "m02678m" +"MAM02678x" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "644109" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678p" "m02678p" +"MAM02678r" "MAM02678" "pmtcoa" "C00154" "HMDB0001338" "CHEBI:15525" "644109" "LMFA07050002" "" "HC00150" "pmtcoa" "MNXM88" "m02678r" "m02678r" "MAM02679c" "MAM02679" "ptth" "C00831" "HMDB0003426" "CHEBI:16753" "439322" "" "" "HC00554" "" "MNXM727034" "m02679c" "m02679c" "MAM02679m" "MAM02679" "ptth" "C00831" "HMDB0003426" "CHEBI:16753" "439322" "" "" "HC00554" "" "MNXM727034" "m02679m" "m02679m" "MAM02680c" "MAM02680" "pnto__R" "C00864" "HMDB0000210" "CHEBI:7916" "988" "" "" "HC00568" "pnto_R" "MNXM364" "m02680c" "m02680c" @@ -5255,8 +5255,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03019x" "MAM03019" "" "" "" "CHEBI:87717" "" "" "" "" "M03019" "" "m03019p" "m03019p" "MAM03020m" "MAM03020" "" "" "" "CHEBI:77549" "" "" "CE2591" "HC12591" "CE2591" "MNXM683714" "m03020m" "m03020m" "MAM03020x" "MAM03020" "" "" "" "CHEBI:77549" "" "" "CE2591" "HC12591" "CE2591" "MNXM683714" "m03020p" "m03020p" -"MAM03021m" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "53480665" "" "" "" "C05279" "MNXM2039" "m03021m" "m03021m" -"MAM03021x" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "53480665" "" "" "" "C05279" "MNXM2039" "m03021p" "m03021p" +"MAM03021m" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "5280770" "" "" "" "C05279" "MNXM2039" "m03021m" "m03021m" +"MAM03021x" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "5280770" "" "" "" "C05279" "MNXM2039" "m03021p" "m03021p" "MAM03022m" "MAM03022" "" "" "" "CHEBI:87701" "" "" "" "" "M03022" "" "m03022m" "m03022m" "MAM03022x" "MAM03022" "" "" "" "CHEBI:87701" "" "" "" "" "M03022" "" "m03022p" "m03022p" "MAM03023m" "MAM03023" "" "" "" "" "" "" "CE2594" "HC12594" "CE2594;HC12594" "" "m03023m" "m03023m" @@ -6244,7 +6244,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03489e" "MAM03489" "c10dc" "" "" "" "" "" "" "" "c10dc" "MNXM162993" "" "c10dc_s" "MAM00181c" "MAM00181" "" "C05264" "" "CHEBI:28325" "11966158" "LMFA07050014" "" "HC01403" "3hdcoa" "MNXM674" "" "m00181c" "MAM03204c" "MAM03204" "3deccrn" "" "" "" "" "" "" "" "3deccrn" "MNXM150909" "" "3deccrn_c" -"MAM03540c" "MAM03540" "ddeccrn" "" "" "" "168381" "" "" "" "ddeccrn" "" "" "ddeccrn_c" "MAM00042c" "MAM00042" "dd2coa" "C03221" "" "CHEBI:15471" "45266564" "LMFA07050010" "" "HC01078" "dd2coa" "MNXM642" "" "m00042c" "MAM03541c" "MAM03541" "ddece1crn" "" "" "" "" "" "" "" "ddece1crn" "" "" "ddece1crn_c" "MAM03491x" "MAM03491" "c12dccoa" "" "" "CHEBI:76315" "" "" "" "" "c12dccoa" "" "" "c12dccoa_p" @@ -6310,7 +6309,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03502e" "MAM03502" "c8dc" "" "" "" "" "" "" "" "c8dc" "MNXM162999" "" "c8dc_s" "MAM01648r" "MAM01648" "" "C01571" "HMDB0000511" "CHEBI:30813" "2969" "LMFA01010010" "" "HC02175" "dca" "MNXM1043;MNXM162295" "" "m01648r" "MAM03202e" "MAM03202" "3ddcrn" "" "" "" "" "" "" "" "3ddcrn" "MNXM150910" "" "3ddcrn_s" -"MAM03540e" "MAM03540" "ddeccrn" "" "" "" "168381" "" "" "" "ddeccrn" "" "" "ddeccrn_s" "MAM03541e" "MAM03541" "ddece1crn" "" "" "" "" "" "" "" "ddece1crn" "" "" "ddece1crn_s" "MAM03204e" "MAM03204" "3deccrn" "" "" "" "" "" "" "" "3deccrn" "MNXM150909" "" "3deccrn_s" "MAM03544e" "MAM03544" "decdicrn" "" "" "" "53481669" "" "" "" "decdicrn" "" "" "decdicrn_s" @@ -6486,7 +6484,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02741e" "MAM02741" "pan4p" "C01134" "" "CHEBI:16858" "987" "" "" "HC00681" "pan4p" "MNXM373" "" "m02741s" "MAM03933e" "MAM03933" "slfcys" "C05824" "HMDB0000731" "CHEBI:27891" "115015" "" "" "" "slfcys" "MNXM2428" "" "slfcys_s" "MAM01828e" "MAM01828" "fmn" "C00061" "HMDB0001520" "CHEBI:17621" "643976" "" "" "HC00064" "fmn" "MNXM119" "" "m01828s" -"MAM02679e" "MAM02679" "ptth" "C00154" "HMDB0003426" "CHEBI:16753" "15667" "" "" "HC00554" "ptth" "MNXM1154" "" "m02679s" +"MAM02679e" "MAM02679" "ptth" "C00154" "HMDB0003426" "CHEBI:16753" "439322" "" "" "HC00554" "ptth" "MNXM1154" "" "m02679s" "MAM03102e" "MAM03102" "q10h2" "C00390" "" "CHEBI:17976" "9962735" "" "" "HC00324" "q10h2" "MNXM9200" "" "m03102s" "MAM02439x" "MAM02439" "mal__L" "C00149" "HMDB0000156" "CHEBI:30797" "222656" "" "" "HC00146" "mal_L" "MNXM98" "" "m02439p" "MAM03933c" "MAM03933" "slfcys" "C05824" "HMDB0000731" "CHEBI:27891" "115015" "" "" "" "slfcys" "MNXM2428" "" "slfcys_c" @@ -6538,7 +6536,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02639e" "MAM02639" "odecrn" "" "HMDB0005065" "" "" "" "" "" "odecrn" "MNXM65475;MNXM8956" "" "m02639s" "MAM02940e" "MAM02940" "stcrn" "" "" "" "6426855" "LMFA07070008" "" "" "stcrn" "MNXM82716;MNXM9119" "" "m02940s" "MAM02411e" "MAM02411" "pmtcrn" "C02990" "HMDB0000222" "CHEBI:17490" "11953816" "LMFA07070004" "" "HC01034" "pmtcrn" "MNXM162587;MNXM787" "" "m02411s" -"MAM02676e" "MAM02676" "hdcecrn" "" "" "" "11953816" "" "" "HC10854" "hdcecrn" "MNXM8716" "" "m02676s" +"MAM02676e" "MAM02676" "hdcecrn" "" "" "" "129849228" "" "" "HC10854" "hdcecrn" "MNXM8716" "" "m02676s" "MAM01620e" "MAM01620" "pcreat" "C02305" "" "CHEBI:58092" "9548602" "" "" "" "pcreat" "MNXM819;MNXM90130;MNXM91273" "" "m01620s" "MAM01580e" "MAM01580" "" "C00417" "" "CHEBI:32805" "309" "" "" "HC00342" "HC00342" "MNXM162425;MNXM813" "" "m01580s" "MAM01372e" "MAM01372" "" "C08261" "HMDB0000784" "CHEBI:48131" "2266" "LMFA01170054" "" "" "C08261" "MNXM164574" "" "m01372s" @@ -8489,4 +8487,5 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00995n" "MAM00995" "" "" "" "CHEBI:17879" "" "" "" "" "" "MNXM164" "" "" "MAM01316n" "MAM01316" "" "" "" "CHEBI:60721" "" "" "" "" "" "MNXM731626" "" "" "MAM00767n" "MAM00767" "" "" "" "CHEBI:84503" "" "" "" "" "" "MNXM733937" "" "" -"MAM01435m" "MAM01435" "" "C02528" "HMDB0000518" "CHEBI:16755" "10133" "LMST04010032" "" "HC00958" "HC00958" "MNXM1183" "" "MAM03318m" \ No newline at end of file +"MAM01435m" "MAM01435" "" "C02528" "HMDB0000518" "CHEBI:16755" "10133" "LMST04010032" "" "HC00958" "HC00958" "MNXM1183" "" "MAM03318m" +"MAM01729e" "MAM01729" "" "" "HMDB0002250" "" "168381" "" "" "" "M01729" "MNXM51468;MNXM588354" "" "MAM03540e" \ No newline at end of file diff --git a/model/reactions.tsv b/model/reactions.tsv index bb15b980..6e5f9038 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -2183,7 +2183,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR02591" "R02396" "CSNATr" "R02396C" "r0534" "" "CSNATr" "MNXR96926" "HMR_2591" "RCR12360" "" 0 "" "RHEA:21136" "HMR_2591" "MAR02594" "" "C30CPT1" "" "r1396" "" "C30CPT1" "" "HMR_2594" "RCR12361" "" 0 "" "" "HMR_2594" "MAR02599" "R01923" "" "R01923X" "r0431" "" "r0431" "MNXR105343;MNXR107232" "HMR_2599" "RCR12362" "" 0 "" "RHEA:12661" "HMR_2599" -"MAR02602" "" "HMR_2602" "" "" "" "HMR_2602" "" "HMR_2602" "RCR12363" "" 0 "" "" "HMR_2602" +"MAR02602" "" "C120CPT1;HMR_2602" "" "" "" "C120CPT1;HMR_2602" "" "HMR_2602" "RCR12363" "" 0 "" "" "C120CPT1;HMR_2602;MAR04506" "MAR02605" "" "" "" "" "" "HMR_2605" "" "HMR_2605" "RCR12364" "" 0 "" "" "HMR_2605" "MAR02608" "" "HMR_2608" "" "" "" "HMR_2608" "" "HMR_2608" "RCR12365" "" 0 "" "" "HMR_2608" "MAR02611" "" "HMR_2611" "" "" "" "HMR_2611" "" "HMR_2611" "RCR12366" "" 0 "" "" "HMR_2611" @@ -9216,7 +9216,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR04479" "" "C10DCCACT" "" "" "" "C10DCCACT" "MNXR96374" "" "" "" 0 "" "" "C10DCCACT" "MAR04491" "" "C10DCc" "" "" "" "C10DCc" "MNXR96375" "" "" "" 0 "" "" "C10DCc" "MAR04504" "" "C10OHc" "" "" "" "C10OHc" "MNXR96376" "" "" "" 0 "" "" "C10OHc" -"MAR04506" "" "C120CPT1" "" "" "" "C120CPT1" "" "" "" "" 0 "" "" "C120CPT1" "MAR04508" "" "C121CPT1" "" "" "" "C121CPT1" "" "" "" "" 0 "" "" "C121CPT1" "MAR04509" "" "C12DCACOT" "" "" "" "C12DCACOT" "" "" "" "" 0 "" "" "C12DCACOT" "MAR04511" "" "C12DCACT" "" "" "" "C12DCACT" "" "" "" "" 0 "" "" "C12DCACT"