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Suspected duplicated metabolites from LipidMaps #620

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JHL-452b opened this issue Jun 8, 2023 · 2 comments
Closed
2 tasks

Suspected duplicated metabolites from LipidMaps #620

JHL-452b opened this issue Jun 8, 2023 · 2 comments
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@JHL-452b
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JHL-452b commented Jun 8, 2023

Current behavior:

Suspected duplicated metabolites from LipidMaps:

reference ID met ID affected rxns Action for mets Action for rxns Comments
LMST02030130 MAM00759c MAM01314c No replace MAM00759c to MAM01314c No
LMFA07050016 MAM00892m MAM00895m MAM00892x MAM00895x change LipidMaps ID annotation for MAM00892 to LMFA07050249; change LipidMaps ID annotation for MAM00895 to LMFA07050250 (LMFA07050016 has been retired.) No duplicates
LMFA07050055 MAM00057c MAM00057m MAM00057x MAM00057n MAM02647c MAM02647m MAM02647x MAM02647r change LipidMaps ID annotation for MAM00057 to LMFA07050385; change LipidMaps ID annotation for MAM02647 to LMFA07050356 (LMFA07050055 has been retired.) No duplicates
LMGP10010000 MAM02726c MAM02727m MAM02728c MAM02728g MAM02728r MAM02729c MAM02730c MAM02731c MAM02732c MAM02733c MAM02733r MAM02733m MAM02733n MAM02733g MAM02733e MAM02728m MAM02730m MAM02730r MAM02730g MAM02731r MAM02731g R group in the formula
LMGL02010000 MAM00233c MAM00234e MAM00235c MAM00236c MAM00236r MAM00237c MAM00238c MAM00239c MAM00240c MAM00240g MAM00240n MAM00241e MAM00240r MAM00240e MAM00235g MAM00235n MAM00235e MAM00237n R group in the formula
LMGL03010000 MAM02956e MAM02957e MAM02958c MAM02958l MAM02958r MAM02959e MAM02959c MAM02956c MAM02956l MAM02959r R group in the formula
LMGP10050000 MAM00473c MAM00485c MAM00486c MAM00487c MAM00488c MAM00489c MAM00490c MAM10006e MAM10006m MAM10006c R group in the formula
PROTEIN MAM00186c MAM00186l MAM00186e MAM01268c MAM01268m MAM01268n MAM01268x MAM01268r MAM01268e MAM01308c MAM01308l MAM01308e MAM01343c MAM01343l MAM01343e MAM01345c MAM01345l MAM01345e MAM01349c MAM01350c MAM01350l MAM01350r MAM01350e MAM01351c MAM01351l MAM01351r MAM01352l MAM01353c MAM01353r MAM01354c MAM01354r MAM01355c MAM01355r MAM01359c MAM01359l MAM01359r MAM01816n MAM01827c MAM01827l MAM01827e MAM02012c MAM02012l MAM02044c MAM02044l MAM02044e MAM02414c MAM02414l MAM02414e MAM02484m MAM02485c MAM02485m MAM02753c MAM02753l MAM02753e MAM02802c MAM02802l MAM02802e MAM02837e MAM02935c MAM02935l MAM02935m MAM01351e MAM01353e MAM01354e MAM01355e MAM01359e peotein
LMGP13010000 MAM01426m MAM01427c MAM01427l MAM01427r MAM01427m MAM01426c R group in the formula
LMGL01010000 MAM00503c MAM00503e MAM00504c MAM00505c MAM00506c MAM00507c MAM00508c MAM00509c MAM00510c MAM00510e R group in the formula
  • change LipidMaps ID annotations for MAM00892m, MAM00892x, MAM00895m, MAM00895x, MAM00057c, MAM00057m, MAM00057x, MAM00057n, MAM02647c, MAM02647m, MAM02647x, MAM02647r
  • replace mets
old ID new ID
MAM00759c MAM01314c
@feiranl
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feiranl commented Jun 20, 2023

Good to go!

@haowang-bioinfo
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fixed in #650

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