From e20af6db2502a8d718e56d486836d6e795153905 Mon Sep 17 00:00:00 2001 From: Devlin-Moyer Date: Tue, 27 Jun 2023 19:03:03 -0400 Subject: [PATCH] fix: removed MAR03369 and merged annotations into MAR03289 --- .../deprecatedReactions.tsv | 1 + model/Human-GEM.yml | 24 +++---------------- model/reactions.tsv | 3 +-- 3 files changed, 5 insertions(+), 23 deletions(-) diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index 54ba8a8e..94d6d505 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -193,3 +193,4 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03311" "" "" "RE1518X" "" "" "" "" "HMR_3311" "RCR14519" "" 0 "" "" "HMR_3311" "MAR04966" "" "FAOXC101C102x" "" "" "" "FAOXC101C102x" "" "" "" "" 0 "" "" "FAOXC101C102x" "MAR03364" "" "" "RE2913X" "" "" "" "" "HMR_3364" "RCR12576" "" 0 "" "" "HMR_3364" +"MAR03369" "" "" "RE2914X" "" "" "" "" "HMR_3369" "RCR12580" "" 0 "" "" "HMR_3369" diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 369c4b46..14c2b904 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -117971,24 +117971,6 @@ - subsystem: - "Beta oxidation of unsaturated fatty acids (n-9) (peroxisomal)" - confidence_score: 0 - - !!omap - - id: "MAR03369" - - name: "" - - metabolites: !!omap - - MAM00118x: -1 - - MAM02041x: 1 - - MAM02630x: -1 - - MAM03023x: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000087008 or ENSG00000161533" - - rxnNotes: "" - - rxnFrom: "HMRdatabase" - - eccodes: "1.3.3.6" - - references: "PMID:1047780;PMID:8973539;PMID:11135616" - - subsystem: - - "Beta oxidation of unsaturated fatty acids (n-9) (peroxisomal)" - - confidence_score: 0 - !!omap - id: "MAR03370" - name: "" @@ -233430,11 +233412,11 @@ - upper_bound: 1000 - gene_reaction_rule: "ENSG00000087008 or ENSG00000161533" - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "1.3.99.3" + - rxnFrom: "Recon3D;HMRdatabase" + - eccodes: "1.3.99.3;1.3.3.6" - references: "PMID:1047780;PMID:11135616;PMID:8973539" - subsystem: - - "Fatty acid oxidation" + - "Beta oxidation of unsaturated fatty acids (n-9) (peroxisomal)" - confidence_score: 0 - !!omap - id: "MAR03291" diff --git a/model/reactions.tsv b/model/reactions.tsv index fedc7c35..8eb10497 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -2589,7 +2589,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03365" "" "" "RE2919X" "" "" "RE2919X" "" "HMR_3365" "RCR12577" "" 0 "" "" "HMR_3365" "MAR03367" "" "" "RE2908X" "" "" "RE2908X" "" "HMR_3367" "RCR12578" "" 0 "" "" "HMR_3367" "MAR03368" "" "" "RE2916X" "" "" "RE2916X" "" "HMR_3368" "RCR12579" "" 0 "" "" "HMR_3368" -"MAR03369" "" "" "RE2914X" "" "" "" "" "HMR_3369" "RCR12580" "" 0 "" "" "HMR_3369" "MAR03370" "" "" "RE2920X" "" "" "RE2920X" "" "HMR_3370" "RCR12581" "" 0 "" "" "HMR_3370" "MAR03372" "" "" "RE2909X" "" "" "RE2909X" "" "HMR_3372" "RCR12582" "" 0 "" "" "HMR_3372" "MAR03373" "" "" "RE2917X" "" "" "RE2917X" "" "HMR_3373" "RCR12583" "" 0 "" "" "HMR_3373" @@ -8880,7 +8879,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03273" "" "RE2912M" "" "" "" "RE2912M" "" "" "" "" 0 "" "" "RE2912M" "MAR03274" "" "" "" "" "" "RE2912X" "" "" "" "" 0 "" "" "RE2912X" "MAR03276" "" "" "RE2913X" "" "" "RE2913X" "" "HMR_3364" "RCR12576" "" 0 "" "" "RE2913X;HMR_3364;MAR03364" -"MAR03289" "" "" "" "" "" "RE2914X" "" "" "" "" 0 "" "" "RE2914X" +"MAR03289" "" "" "RE2914X" "" "" "RE2914X" "" "HMR_3369" "RCR12580" "" 0 "" "" "RE2914X;HMR_3369;MAR03369" "MAR03291" "" "" "" "" "" "RE2915M" "" "" "" "" 0 "" "" "RE2915M" "MAR03295" "" "" "" "" "" "RE2915X" "" "" "" "" 0 "" "" "RE2915X" "MAR03297" "" "" "" "" "" "RE2921M" "" "" "" "" 0 "" "" "RE2921M"