diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index 14656a44..2af418d9 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -243,6 +243,10 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR07790" "" "FADtx" "" "" "" "FADtx" "MNXR99217" "HMR_7790" "RCR20203" "" 0 "" "" "HMR_7790" "MAR08564" "" "KYNAKGAT" "" "" "" "KYNAKGAT" "MNXR100948" "HMR_8564" "RCR11356" "" 0 "" "" "HMR_8564" "MAR08565" "R03445" "KYNATESYN" "" "" "" "KYNATESYN" "MNXR100949" "HMR_8565" "RCR11357" "" 0 "" "RHEA:42452" "HMR_8565" +"MAR04843" "" "" "" "r0801" "" "r0801" "MNXR105390" "HMR_4843" "RCR20168" "" 0 "" "" "HMR_4843" +"MAR09019" "" "" "" "" "" "HMR_9019" "" "HMR_9019" "RCR20242" "" 0 "" "" "HMR_9019" +"MAR07823" "" "DNDPt51m" "" "" "" "DCTPtm" "MNXR97204" "" "" "" 0 "" "" "DCTPtm" +"MAR07926" "" "DGTPtm" "" "" "" "DGTPtm" "MNXR97327" "" "" "" 0 "" "" "DGTPtm" "MAR01483" "" "LIPOti" "" "" "" "LIPOti" "MNXR101093" "" "" "" 0 "" "" "LIPOti" "MAR06406" "" "LIPOti" "RT1089" "" "" "" "MNXR101093" "HMR_6406" "RCR41534" "" 0 "" "" "HMR_6406" "MAR00478" "R00844" "" "" "" "R-HSA-75889" "HMR_0478" "MNXR99876" "HMR_0478" "RCR14575" "" 0 "RHEA:11098" "RHEA:11096" "HMR_0478" diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 8f059c3f..9d0c2860 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -195001,22 +195001,6 @@ - subsystem: - "Transport reactions" - confidence_score: 0 - - !!omap - - id: "MAR09019" - - name: "" - - metabolites: !!omap - - MAM01424c: -1 - - MAM01424m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "HMRdatabase" - - eccodes: "" - - references: "" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - !!omap - id: "MAR09020" - name: "" @@ -196126,24 +196110,6 @@ - subsystem: - "Transport reactions" - confidence_score: 0 - - !!omap - - id: "MAR04843" - - name: "" - - metabolites: !!omap - - MAM01948c: -1 - - MAM01948m: 1 - - MAM02034c: 1 - - MAM02034m: -1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000108602 or ENSG00000132746 or ENSG00000184254" - - rxnNotes: "" - - rxnFrom: "HMRdatabase" - - eccodes: "" - - references: "PMID:11078702" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - !!omap - id: "MAR04850" - name: "" @@ -244767,38 +244733,6 @@ - subsystem: - "Transport reactions" - confidence_score: 0 - - !!omap - - id: "MAR07823" - - name: "Transport of dCTP into Mitochondria" - - metabolites: !!omap - - MAM01645c: -1 - - MAM01645m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:16816105;PMID:17403938" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - - !!omap - - id: "MAR07926" - - name: "Transport of dGTP into Mitochondria" - - metabolites: !!omap - - MAM01688c: -1 - - MAM01688m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:16816105;PMID:17403938" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - !!omap - id: "MAR08111" - name: "Transport of Dihydroxyacetone Phosphate into Cytosol" @@ -244877,13 +244811,13 @@ - metabolites: !!omap - MAM01753c: -1 - MAM01753m: 1 - - lower_bound: 0 + - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "" + - gene_reaction_rule: "ENSG00000171612" - rxnNotes: "" - rxnFrom: "Recon3D" - eccodes: "" - - references: "PMID:16816105;PMID:17403938" + - references: "PMID:25320081" - subsystem: - "Transport reactions" - confidence_score: 0 @@ -304763,6 +304697,630 @@ - subsystem: - "Transport reactions" - confidence_score: 0 + - !!omap + - id: "MAR20132" + - name: "MAR20132" + - metabolites: !!omap + - MAM01424c: 1 + - MAM01424m: -1 + - MAM01623c: -1 + - MAM01623m: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20133" + - name: "MAR20133" + - metabolites: !!omap + - MAM01590c: 1 + - MAM01590m: -1 + - MAM01623c: -1 + - MAM01623m: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20134" + - name: "MAR20134" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01645c: 1 + - MAM01645m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20135" + - name: "MAR20135" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01643c: 1 + - MAM01643m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20136" + - name: "MAR20136" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01644c: 1 + - MAM01644m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20137" + - name: "MAR20137" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM02034c: 1 + - MAM02034m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20138" + - name: "MAR20138" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01948c: 1 + - MAM01948m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20139" + - name: "MAR20139" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM02016c: 1 + - MAM02016m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20140" + - name: "MAR20140" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01688c: 1 + - MAM01688m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20141" + - name: "MAR20141" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01680c: 1 + - MAM01680m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20142" + - name: "MAR20142" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01686c: 1 + - MAM01686m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20143" + - name: "MAR20143" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM02193c: 1 + - MAM02193m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20144" + - name: "MAR20144" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM02161c: 1 + - MAM02161m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20145" + - name: "MAR20145" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM02167c: 1 + - MAM02167m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20146" + - name: "MAR20146" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120 or ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20147" + - name: "MAR20147" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM03106c: 1 + - MAM03106m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20148" + - name: "MAR20148" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM03114c: 1 + - MAM03114m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20149" + - name: "MAR20149" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01756c: 1 + - MAM01756m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20150" + - name: "MAR20150" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01754c: 1 + - MAM01754m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20151" + - name: "MAR20151" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - MAM01755c: 1 + - MAM01755m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20152" + - name: "MAR20152" + - metabolites: !!omap + - MAM01424c: -1 + - MAM01424m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20153" + - name: "MAR20153" + - metabolites: !!omap + - MAM01645c: -1 + - MAM01645m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20154" + - name: "MAR20154" + - metabolites: !!omap + - MAM01643c: -1 + - MAM01643m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20155" + - name: "MAR20155" + - metabolites: !!omap + - MAM02034c: -1 + - MAM02034m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20156" + - name: "MAR20156" + - metabolites: !!omap + - MAM01948c: -1 + - MAM01948m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20157" + - name: "MAR20157" + - metabolites: !!omap + - MAM01688c: -1 + - MAM01688m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20158" + - name: "MAR20158" + - metabolites: !!omap + - MAM01680c: -1 + - MAM01680m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20159" + - name: "MAR20159" + - metabolites: !!omap + - MAM02193c: -1 + - MAM02193m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20160" + - name: "MAR20160" + - metabolites: !!omap + - MAM01753c: -1 + - MAM01753m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20161" + - name: "MAR20161" + - metabolites: !!omap + - MAM01747c: -1 + - MAM01747m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20162" + - name: "MAR20162" + - metabolites: !!omap + - MAM03106c: -1 + - MAM03106m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20163" + - name: "MAR20163" + - metabolites: !!omap + - MAM01756c: -1 + - MAM01756m: 1 + - MAM03130c: 1 + - MAM03130m: -1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20164" + - name: "MAR20164" + - metabolites: !!omap + - MAM01623c: -1 + - MAM01623m: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120 or ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20165" + - name: "MAR20165" + - metabolites: !!omap + - MAM02034c: -1 + - MAM02034m: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120 or ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 + - !!omap + - id: "MAR20166" + - name: "MAR20166" + - metabolites: !!omap + - MAM03130c: -1 + - MAM03130m: 1 + - lower_bound: -1000 + - upper_bound: 1000 + - gene_reaction_rule: "ENSG00000114120 or ENSG00000171612" + - rxnNotes: "" + - rxnFrom: "" + - eccodes: "" + - references: "PMID:25320081" + - subsystem: + - "Transport reactions" + - confidence_score: 0 - genes: - !!omap - id: "ENSG00000000419" @@ -307218,6 +307776,9 @@ - !!omap - id: "ENSG00000114115" - name: "RBP1" + - !!omap + - id: "ENSG00000114120" + - name: "SLC25A36" - !!omap - id: "ENSG00000114124" - name: "GRK7" @@ -311415,6 +311976,9 @@ - !!omap - id: "ENSG00000171608" - name: "PIK3CD" + - !!omap + - id: "ENSG00000171612" + - name: "SLC25A33" - !!omap - id: "ENSG00000171723" - name: "GPHN" diff --git a/model/genes.tsv b/model/genes.tsv index 4b17c98d..e93508b7 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -2884,3 +2884,5 @@ genes geneENSTID geneENSPID geneUniProtID geneSymbols geneEntrezID geneNames gen "ENSG00000111319" "ENST00000228916;ENST00000360168;ENST00000540037;ENST00000543768;ENST00000396966;ENST00000536788" "ENSP00000228916;ENSP00000353292;ENSP00000440876;ENSP00000438739;ENSP00000380166;ENSP00000443434" "P37088" "SCNN1A" "6337" "sodium channel epithelial 1 subunit alpha" "" "" "" "ENSG00000162572" "ENST00000379116;ENST00000338555;ENST00000400928;ENST00000325425;ENST00000379099;ENST00000470022" "ENSP00000368411;ENSP00000339504;ENSP00000383717;ENSP00000321594;ENSP00000368393;ENSP00000420548" "P51172" "SCNN1D" "6339" "sodium channel epithelial 1 subunit delta" "" "" "" "ENSG00000153253" "ENST00000283254;ENST00000706067;ENST00000639244;ENST00000409101;ENST00000668657;ENST00000440431;ENST00000453007" "ENSP00000283254;ENSP00000516211;ENSP00000492251;ENSP00000386726;ENSP00000499420;ENSP00000403348;ENSP00000391569" "Q9NY46" "SCN3A" "6328" "sodium voltage-gated channel alpha subunit 3" "" "" "" +"ENSG00000171612" "ENST00000302692" "ENSP00000306328" "Q9BSK2" "SLC25A33" "84275" "solute carrier family 25 member 33" "" "" "" +"ENSG00000114120" "ENST00000324194;ENST00000446041;ENST00000507429;ENST00000453248;ENST00000513887;ENST00000648615;ENST00000502594;ENST00000512023;ENST00000512506;ENST00000631654" "ENSP00000320688;ENSP00000401938;ENSP00000421470;ENSP00000391521;ENSP00000422265;ENSP00000497436;ENSP00000423319;ENSP00000424505;ENSP00000423711;ENSP00000487839" "Q96CQ1" "SLC25A36" "55186" "solute carrier family 25 member 36" "" "" "" diff --git a/model/reactions.tsv b/model/reactions.tsv index 44146d71..5de1d8ae 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -6639,7 +6639,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR08022" "" "2AMADPTm" "" "" "" "2AMADPTm" "MNXR94780" "HMR_8022" "RCR20241" "" 0 "" "" "HMR_8022" "MAR08070" "" "" "" "" "" "SLDtm" "" "HMR_8070" "RCR20536" "" 0 "" "" "HMR_8070" "MAR09015" "" "" "" "" "" "AMETtd" "" "HMR_9015" "RCR20135" "" 0 "" "" "HMR_9015" -"MAR09019" "" "" "" "" "" "HMR_9019" "" "HMR_9019" "RCR20242" "" 0 "" "" "HMR_9019" "MAR09020" "" "" "" "" "" "FADtm" "" "HMR_9020" "RCR20537" "" 0 "" "" "HMR_9020" "MAR00157" "" "" "" "" "" "HMR_0157" "" "HMR_0157" "RCR20164" "" 0 "" "" "HMR_0157" "MAR00158" "" "" "" "r1401" "" "r1401" "MNXR105470" "HMR_0158" "RCR20165" "" 0 "" "" "HMR_0158" @@ -6707,7 +6706,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR04754" "" "PPPG9tm" "" "r0976" "" "PPPG9tm" "MNXR103127" "HMR_4754" "RCR20570" "3.A.1.210" 0 "RHEA:27649" "RHEA:27646" "HMR_4754" "MAR04756" "" "HMR_4756" "" "" "" "HMR_4756" "" "HMR_4756" "RCR20262" "" 0 "" "" "HMR_4756" "MAR04760" "" "PHEMEtm" "" "r0880" "" "PHEMEtm" "MNXR102625" "HMR_4760" "RCR20571" "3.A.1.210" 0 "" "" "HMR_4760" -"MAR04843" "" "" "" "r0801" "" "r0801" "MNXR105390" "HMR_4843" "RCR20168" "" 0 "" "" "HMR_4843" "MAR04850" "" "" "" "r0818" "" "r0818" "MNXR97813" "HMR_4850" "RCR20572" "" 0 "" "" "HMR_4850" "MAR04851" "" "" "" "r0819" "" "r0819" "MNXR105393" "HMR_4851" "RCR20573" "2.A.29.2.2" 0 "" "" "HMR_4851" "MAR04852" "" "AKGMALtm" "" "r0820" "" "AKGMALtm" "MNXR95659" "HMR_4852" "RCR20169" "2.A.29.2.2" 0 "" "" "HMR_4852" @@ -9510,8 +9508,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR07817" "" "CYSAMOe" "" "" "" "CYSAMOe" "MNXR96988" "" "" "" 0 "RHEA:14410" "RHEA:14409" "CYSAMOe" "MAR07819" "" "Coqe" "" "" "" "Coqe" "MNXR97066" "" "" "" 0 "" "" "Coqe" "MAR07821" "" "DATPtm_cho" "" "" "" "DATPtm" "MNXR97176" "" "" "" 0 "" "" "DATPtm" -"MAR07823" "" "DNDPt51m" "" "" "" "DCTPtm" "MNXR97204" "" "" "" 0 "" "" "DCTPtm" -"MAR07926" "" "DGTPtm" "" "" "" "DGTPtm" "MNXR97327" "" "" "" 0 "" "" "DGTPtm" "MAR08111" "" "DHAPtm" "" "" "" "DHAPtc" "MNXR97366" "" "" "" 0 "" "" "DHAPtc" "MAR08204" "" "DPCOAPPe" "" "" "" "DPCOAPPe" "MNXR97763" "" "" "" 0 "" "" "DPCOAPPe" "MAR08218" "" "DSREDUCr" "" "" "" "DSREDUCr" "" "" "" "" 0 "" "" "DSREDUCr" @@ -12966,3 +12962,38 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR20129" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" "MAR20130" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" "MAR20131" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20132" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20133" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20134" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20135" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20136" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20137" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20138" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20139" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20140" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20141" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20142" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20143" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20144" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20145" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20146" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20147" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20148" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20149" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20150" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20151" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20152" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20153" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20154" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20155" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20156" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20157" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20158" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20159" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20160" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20161" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20162" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20163" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20164" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20165" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" +"MAR20166" "" "" "" "" "" "" "" "" "" "" 0 "" "" ""