From 402ecb67b2cc7c560658ac1a8b1b98066f1ffef3 Mon Sep 17 00:00:00 2001 From: Devlin-Moyer Date: Wed, 18 Oct 2023 11:04:30 -0400 Subject: [PATCH] fix: two of the new reactions were accidentally identical --- model/Human-GEM.yml | 130 +++++++++++++++++++------------------------- model/reactions.tsv | 1 - 2 files changed, 56 insertions(+), 75 deletions(-) diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index bc29c1e8..ee787784 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -304952,24 +304952,6 @@ - !!omap - id: "MAR20139" - name: "MAR20139" - - metabolites: !!omap - - MAM01623c: -1 - - MAM01623m: 1 - - MAM01948c: 1 - - MAM01948m: -1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000114120" - - rxnNotes: "" - - rxnFrom: "" - - eccodes: "" - - references: "PMID:25320081" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - - !!omap - - id: "MAR20140" - - name: "MAR20140" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -304986,8 +304968,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20141" - - name: "MAR20141" + - id: "MAR20140" + - name: "MAR20140" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305004,8 +304986,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20142" - - name: "MAR20142" + - id: "MAR20141" + - name: "MAR20141" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305022,8 +305004,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20143" - - name: "MAR20143" + - id: "MAR20142" + - name: "MAR20142" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305040,8 +305022,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20144" - - name: "MAR20144" + - id: "MAR20143" + - name: "MAR20143" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305058,8 +305040,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20145" - - name: "MAR20145" + - id: "MAR20144" + - name: "MAR20144" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305076,8 +305058,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20146" - - name: "MAR20146" + - id: "MAR20145" + - name: "MAR20145" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305094,8 +305076,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20147" - - name: "MAR20147" + - id: "MAR20146" + - name: "MAR20146" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305112,8 +305094,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20148" - - name: "MAR20148" + - id: "MAR20147" + - name: "MAR20147" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305130,8 +305112,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20149" - - name: "MAR20149" + - id: "MAR20148" + - name: "MAR20148" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305148,8 +305130,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20150" - - name: "MAR20150" + - id: "MAR20149" + - name: "MAR20149" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305166,8 +305148,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20151" - - name: "MAR20151" + - id: "MAR20150" + - name: "MAR20150" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305184,8 +305166,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20152" - - name: "MAR20152" + - id: "MAR20151" + - name: "MAR20151" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305202,8 +305184,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20153" - - name: "MAR20153" + - id: "MAR20152" + - name: "MAR20152" - metabolites: !!omap - MAM01424c: -1 - MAM01424m: 1 @@ -305220,8 +305202,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20154" - - name: "MAR20154" + - id: "MAR20153" + - name: "MAR20153" - metabolites: !!omap - MAM01645c: -1 - MAM01645m: 1 @@ -305238,8 +305220,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20155" - - name: "MAR20155" + - id: "MAR20154" + - name: "MAR20154" - metabolites: !!omap - MAM01643c: -1 - MAM01643m: 1 @@ -305256,8 +305238,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20156" - - name: "MAR20156" + - id: "MAR20155" + - name: "MAR20155" - metabolites: !!omap - MAM02034c: -1 - MAM02034m: 1 @@ -305274,8 +305256,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20157" - - name: "MAR20157" + - id: "MAR20156" + - name: "MAR20156" - metabolites: !!omap - MAM01948c: -1 - MAM01948m: 1 @@ -305292,8 +305274,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20158" - - name: "MAR20158" + - id: "MAR20157" + - name: "MAR20157" - metabolites: !!omap - MAM01688c: -1 - MAM01688m: 1 @@ -305310,8 +305292,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20159" - - name: "MAR20159" + - id: "MAR20158" + - name: "MAR20158" - metabolites: !!omap - MAM01680c: -1 - MAM01680m: 1 @@ -305328,8 +305310,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20160" - - name: "MAR20160" + - id: "MAR20159" + - name: "MAR20159" - metabolites: !!omap - MAM02193c: -1 - MAM02193m: 1 @@ -305346,8 +305328,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20161" - - name: "MAR20161" + - id: "MAR20160" + - name: "MAR20160" - metabolites: !!omap - MAM01753c: -1 - MAM01753m: 1 @@ -305364,8 +305346,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20162" - - name: "MAR20162" + - id: "MAR20161" + - name: "MAR20161" - metabolites: !!omap - MAM01747c: -1 - MAM01747m: 1 @@ -305382,8 +305364,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20163" - - name: "MAR20163" + - id: "MAR20162" + - name: "MAR20162" - metabolites: !!omap - MAM03106c: -1 - MAM03106m: 1 @@ -305400,8 +305382,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20164" - - name: "MAR20164" + - id: "MAR20163" + - name: "MAR20163" - metabolites: !!omap - MAM01756c: -1 - MAM01756m: 1 @@ -305418,8 +305400,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20165" - - name: "MAR20165" + - id: "MAR20164" + - name: "MAR20164" - metabolites: !!omap - MAM01623c: -1 - MAM01623m: 1 @@ -305434,8 +305416,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20166" - - name: "MAR20166" + - id: "MAR20165" + - name: "MAR20165" - metabolites: !!omap - MAM02034c: -1 - MAM02034m: 1 @@ -305450,8 +305432,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20167" - - name: "MAR20167" + - id: "MAR20166" + - name: "MAR20166" - metabolites: !!omap - MAM01753c: -1 - MAM01753m: 1 @@ -305466,8 +305448,8 @@ - "Transport reactions" - confidence_score: 0 - !!omap - - id: "MAR20168" - - name: "MAR20168" + - id: "MAR20167" + - name: "MAR20167" - metabolites: !!omap - MAM03130c: -1 - MAM03130m: 1 diff --git a/model/reactions.tsv b/model/reactions.tsv index ef4701db..ced5c3e3 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -13004,4 +13004,3 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR20165" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" "MAR20166" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" "MAR20167" "" "" "" "" "" "" "" "" "" "" 0 "" "" "" -"MAR20168" "" "" "" "" "" "" "" "" "" "" 0 "" "" ""