From 199992c7a4cc99d141723026ff141ffe282dada3 Mon Sep 17 00:00:00 2001 From: Jiahao Luo <67491919+JHL-452b@users.noreply.github.com> Date: Fri, 8 Nov 2024 15:05:46 +0800 Subject: [PATCH] fix-GPR_curation_for_Carnitine_shuttle --- model/Human-GEM.yml | 123 +++++++++++++++++++++----------------------- model/genes.tsv | 1 - 2 files changed, 60 insertions(+), 64 deletions(-) diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index e9484f6b..d3f123f3 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -110881,7 +110881,7 @@ - MAM02348c: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000110090 or ENSG00000169169 or ENSG00000205560" + - gene_reaction_rule: "ENSG00000110090 or ENSG00000205560" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "2.3.1.21" @@ -111080,7 +111080,7 @@ - MAM02634m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000178537 or ENSG00000197119" + - gene_reaction_rule: "ENSG00000178537" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111116,7 +111116,7 @@ - MAM02657m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000178537 or ENSG00000197119" + - gene_reaction_rule: "ENSG00000178537" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111152,7 +111152,7 @@ - MAM02443m: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111188,7 +111188,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111224,7 +111224,7 @@ - MAM03049m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111260,7 +111260,7 @@ - MAM02973m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111296,7 +111296,7 @@ - MAM02974m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111332,7 +111332,7 @@ - MAM02975m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111368,7 +111368,7 @@ - MAM02976m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111404,7 +111404,7 @@ - MAM02688m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111440,11 +111440,11 @@ - MAM02411m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" - - references: "PMID:14598172;PMID:18406340;PMID:6361812;PMID:8132483;PMID:1735445;PMID:1988962;PMID:2351134;PMID:2355017;PMID:7892212PMID:9399886" + - references: "PMID:14598172;PMID:18406340;PMID:6361812;PMID:8132483;PMID:1735445;PMID:1988962;PMID:2351134;PMID:2355017;PMID:7892212;PMID:9399886;PubMed:10215651;PubMed:15107849;PubMed:16729965" - subsystem: - "Carnitine shuttle (mitochondrial)" - confidence_score: 0 @@ -111476,7 +111476,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111512,7 +111512,7 @@ - MAM02676m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111548,7 +111548,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111584,7 +111584,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111620,7 +111620,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111656,11 +111656,11 @@ - MAM02940m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" - - references: "" + - references: "PubMed:10215651;PubMed:15107849;PubMed:16729965" - subsystem: - "Carnitine shuttle (mitochondrial)" - confidence_score: 0 @@ -111692,7 +111692,7 @@ - MAM02639m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111728,7 +111728,7 @@ - MAM02640m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111764,7 +111764,7 @@ - MAM02410m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111800,7 +111800,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111836,7 +111836,7 @@ - MAM02638m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111872,7 +111872,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111908,7 +111908,7 @@ - MAM02611m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111944,7 +111944,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -111980,7 +111980,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112016,7 +112016,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112052,7 +112052,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112088,7 +112088,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112124,7 +112124,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112160,7 +112160,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112196,7 +112196,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112232,7 +112232,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112268,7 +112268,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112304,7 +112304,7 @@ - MAM02637m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112340,7 +112340,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112376,7 +112376,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112412,7 +112412,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112448,7 +112448,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112484,7 +112484,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112520,11 +112520,11 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" - - references: "" + - references: "PubMed:10215651;PubMed:15107849;PubMed:16729965" - subsystem: - "Carnitine shuttle (mitochondrial)" - confidence_score: 0 @@ -112556,7 +112556,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112592,7 +112592,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112628,7 +112628,7 @@ - MAM02388m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112664,7 +112664,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112700,7 +112700,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112736,7 +112736,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112772,7 +112772,7 @@ - MAM02636m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112808,7 +112808,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112844,7 +112844,7 @@ - MAM02348m: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112880,7 +112880,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -112917,7 +112917,7 @@ - MAM02348m: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197119 or ENSG00000197208" + - gene_reaction_rule: "ENSG00000149742 or ENSG00000175003 or ENSG00000178537 or ENSG00000197208" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -113097,7 +113097,7 @@ - MAM02409x: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000178537 or ENSG00000197119" + - gene_reaction_rule: "ENSG00000178537" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -113133,7 +113133,7 @@ - MAM02657x: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000178537 or ENSG00000197119" + - gene_reaction_rule: "ENSG00000178537" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -113205,7 +113205,7 @@ - MAM02443r: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000178537 or ENSG00000197119" + - gene_reaction_rule: "ENSG00000178537" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "" @@ -115366,7 +115366,7 @@ - MAM02348c: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000110090 or ENSG00000169169 or ENSG00000205560" + - gene_reaction_rule: "ENSG00000110090 or ENSG00000205560" - rxnNotes: "" - rxnFrom: "HMRdatabase" - eccodes: "2.3.1.21" @@ -312494,9 +312494,6 @@ - !!omap - id: "ENSG00000197093" - name: "GAL3ST4" - - !!omap - - id: "ENSG00000197119" - - name: "SLC25A29" - !!omap - id: "ENSG00000197121" - name: "PGAP1" diff --git a/model/genes.tsv b/model/genes.tsv index 763bde13..adf1b15b 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -2585,7 +2585,6 @@ ENSG00000196839 "ENST00000464097;ENST00000372874;ENST00000536532;ENST00000492931 ENSG00000196950 "ENST00000458054;ENST00000409086;ENST00000444421;ENST00000359634;ENST00000430412;ENST00000412905;ENST00000464301;ENST00000418005;ENST00000465851" "ENSP00000389640;ENSP00000386766;ENSP00000394469;ENSP00000352655;ENSP00000394995;ENSP00000406590;ENSP00000409272" Q9ULF5 SLC39A10 57181 solute carrier family 39 member 10 "DKFZp564L2123;FLJ90515;KIAA1265" "Cytosol;Nucleus" CellAtlas ENSG00000196968 "ENST00000372841;ENST00000394790;ENST00000465695;ENST00000489264" "ENSP00000361932;ENSP00000378270" Q495W5 FUT11 170384 fucosyltransferase 11 MGC33202 "Golgi apparatus;Nucleus" "SwissProt;CellAtlas" ENSG00000197093 "ENST00000413800;ENST00000495882;ENST00000360039;ENST00000423751;ENST00000411994;ENST00000498000;ENST00000482469;ENST00000460995" "ENSP00000400451;ENSP00000353142;ENSP00000399066;ENSP00000414733;ENSP00000488586;ENSP00000487594;ENSP00000488800" Q96RP7 GAL3ST4 79690 galactose-3-O-sulfotransferase 4 FLJ12116 "Golgi apparatus;Nucleus;Cytosol" "SwissProt;CellAtlas" -ENSG00000197119 "ENST00000359232;ENST00000554912;ENST00000392908;ENST00000556505;ENST00000555927;ENST00000554224;ENST00000556715;ENST00000554291;ENST00000554060;ENST00000556868;ENST00000555475;ENST00000553359;ENST00000556873;ENST00000553574;ENST00000555051;ENST00000555949;ENST00000557438;ENST00000555888;ENST00000556201;ENST00000556844" "ENSP00000352167;ENSP00000450913;ENSP00000376640;ENSP00000452446;ENSP00000452078;ENSP00000451573;ENSP00000451952;ENSP00000452324;ENSP00000451644;ENSP00000451808" Q8N8R3 SLC25A29 123096 solute carrier family 25 member 29 "C14orf69;FLJ38975" Inner mitochondria SwissProt ENSG00000197121 "ENST00000354764;ENST00000423035;ENST00000422444;ENST00000459896;ENST00000470179;ENST00000409475;ENST00000476250;ENST00000482051;ENST00000409188;ENST00000374738;ENST00000485830" "ENSP00000346809;ENSP00000415405;ENSP00000390555;ENSP00000387028;ENSP00000386802;ENSP00000363870" Q75T13 PGAP1 80055 post-GPI attachment to proteins inositol deacylase 1 "Bst1;FLJ12377;SPG67" Endoplasmic reticulum SwissProt ENSG00000197142 "ENST00000354655;ENST00000393081;ENST00000433418;ENST00000356116;ENST00000354273;ENST00000495539;ENST00000467340;ENST00000496328" "ENSP00000346680;ENSP00000376796;ENSP00000403647;ENSP00000348429;ENSP00000346223;ENSP00000507158" Q9ULC5 ACSL5 51703 acyl-CoA synthetase long chain family member 5 "ACS2;ACS5;FACL5" "Endoplasmic reticulum;Mitochondria;Nucleus" "SwissProt;CellAtlas" ENSG00000197165 "ENST00000534108;ENST00000533150;ENST00000335715;ENST00000395630;ENST00000526384" "ENSP00000433075;ENSP00000435271;ENSP00000338742;ENSP00000378992;ENSP00000435358" P50226 SULT1A2 6799 sulfotransferase family 1A member 2 "HAST4;STP2" Cytosol SwissProt