upgrade gadgetron to 3.17 or later

[KrisThielemans]

see SyneRBI/SyneRBI_VM#141 for possible issues. might need changes to travis and docker dependencies

[KrisThielemans]

and wiki

[KrisThielemans]

update version_config but need to check with VM as well

[KrisThielemans]

@evgueni-ovtchinnikov can you check this one please? It's the last major change before 2.3 I believe.

[evgueni-ovtchinnikov]

Build fails with

CMake Error at /usr/local/share/cmake-3.13/Modules/FindPackageHandleStandardArgs.cmake:137 (message):
  Could NOT find LAPACKE (missing: LAPACKE_INCLUDE_DIR LAPACKE_LIBRARIES)
Call Stack (most recent call first):
  /usr/local/share/cmake-3.13/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE)
  cmake/FindLAPACKE.cmake:19 (find_package_handle_standard_args)
  CMakeLists.txt:300 (find_package)

[rijobro]

You'll need to install extra prerequisites, specifically LAPACKE:

https://github.com/SyneRBI/SyneRBI_VM/blob/80e4ce94e1cad64e72b2cc7f751386321d9ab719/scripts/INSTALL_prerequisites_with_apt-get.sh#L21-L23

[evgueni-ovtchinnikov]

should i add it then to INSTALL_prerequisites_with_apt-get.sh?

[rijobro]

I noticed it was missing and added a few minutes ago: SyneRBI/SyneRBI_VM@80e4ce9.

[KrisThielemans]

will need to be added in the docker scripts as well, as these are still independent.

[KrisThielemans]

On MacOS, @DANAJK wrote the following on Slack:

The instructions for the current course on gadgetron say:

Mac OS
Gadgetron doesn't currently build on Mac OS. You may try MacPorts or HomeBrew. However, users should have better luck with the following options:

• Software such as Parallels, VirtualBox, etc., can be used to install a Ubuntu virtual machine (VM), then install Gadgetron into that Ubuntu VM, as detailed above for the native Ubuntu installation.
• Alternatively, Docker Desktop Community Edition for Mac can be used to download and install a Gadgetron Docker container. After the Docker software installation is complete, and a network connection is available, the Gadgetron Docker container is installed by running the command:

docker pull gadgetron/ubuntu_2004

Once the container has been downloaded and installed into the user's Docker environment, the user should then be able to launch it as they would any other container, for example:

docker run --name gtLocal gadgetron/ubuntu_2004

and interact with the running container using any of Docker's standard suite of command line tools.

[rijobro]

It also doesn't look like Gadgetron will be functional on OSX any time soon, see: gadgetron/gadgetron#822 (comment) (and possibly: gadgetron/gadgetron#787 (comment)).

[paskino]

Work is ongoing in #438

[paskino]

closed by #438