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bam_stat_make_input.sh bug - missing command mkdir ${outdir} #4

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NJNataren opened this issue Mar 18, 2024 · 0 comments
Open

bam_stat_make_input.sh bug - missing command mkdir ${outdir} #4

NJNataren opened this issue Mar 18, 2024 · 0 comments

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@NJNataren
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NJNataren commented Mar 18, 2024 •
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Script was not creating the directory
outdir=../QC_reports/${cohort}_final_bams

This was due to missing ${outdir} in the mkdir command, which should be
mkdir -p ${INPUTS} ${outdir} ${logdir}
@NJNataren NJNataren changed the title bam_stat_make_input.sh bug bam_stat_make_input.sh bugs Mar 18, 2024
@NJNataren NJNataren changed the title bam_stat_make_input.sh bugs bam_stat_make_input.sh bug - missing command mkdir ${outdir} Mar 18, 2024
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