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load ortholog relationships from AGR's "strict orthology" project #140

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andrewsu opened this issue Mar 20, 2020 · 3 comments
Open

load ortholog relationships from AGR's "strict orthology" project #140

andrewsu opened this issue Mar 20, 2020 · 3 comments

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@andrewsu
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File available here: https://www.alliancegenome.org/downloads

Suggested by Judy Blake from MGI/AGR

@rwst
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rwst commented May 16, 2020

What about ortholog groups from https://omabrowser.org/oma/home/ ?

@andrewsu
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OMA is currently licensed under CC-BY-SA https://omabrowser.org/oma/license/ so we would not be able to load to Wikidata without asking them to relicense.

Also, since the AGR is a consortium of many of the most popular model organisms, I think they would be the most trustworthy source for ortholog data on that subset of organisms.

@rwst
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rwst commented May 18, 2020

Is there any variation in the definition of ortholog? The sets from both projects should not contradict in my opinion. But the license issue matters so I'm glad there is a source we can use. I have already criticized the ortholog property (P684) here: https://www.wikidata.org/wiki/Property_talk:P684#not_efficient_spacewise

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