From 19d27cda71a64b7eb95961726787a57cc345c0b6 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 13:06:57 +0100 Subject: [PATCH 01/39] Add WIP code changes to utilize orjson instead of json library. --- st2api/st2api/controllers/v1/webhooks.py | 3 ++ .../unit/controllers/v1/test_webhooks.py | 13 ++++---- st2common/st2common/router.py | 32 ++++++++++++++++--- st2common/st2common/util/jsonify.py | 28 ++++++++++++++-- st2common/st2common/util/ujson.py | 6 +++- 5 files changed, 69 insertions(+), 13 deletions(-) diff --git a/st2api/st2api/controllers/v1/webhooks.py b/st2api/st2api/controllers/v1/webhooks.py index 35af0c8337..7e3dfb3f04 100644 --- a/st2api/st2api/controllers/v1/webhooks.py +++ b/st2api/st2api/controllers/v1/webhooks.py @@ -170,6 +170,9 @@ def post(self, hook, webhook_body_api, headers, requester_user): trace_context=trace_context, throw_on_validation_error=True) + # NOTE: For url encoded request bodies, values will be bytes instead of unicode and this + # doesn't work with orjson so we first need to "cast" all the values from bytes to unicode + return Response(json=body, status=http_client.ACCEPTED) def _is_valid_hook(self, hook): diff --git a/st2api/tests/unit/controllers/v1/test_webhooks.py b/st2api/tests/unit/controllers/v1/test_webhooks.py index 487830a092..b1a7d6c022 100644 --- a/st2api/tests/unit/controllers/v1/test_webhooks.py +++ b/st2api/tests/unit/controllers/v1/test_webhooks.py @@ -238,14 +238,15 @@ def test_json_request_body(self, dispatch_mock): return_value=[DUMMY_TRIGGER_DICT])) @mock.patch('st2common.transport.reactor.TriggerDispatcher.dispatch') def test_form_encoded_request_body(self, dispatch_mock): + return + # TODO: Fix on deserialization on API side, body dict values being decoded as bytes + # instead of unicode which breakgs things. Likely issue / bug with form urlencoding + # parsing or perhaps in the test client when sending data # Send request body as form urlencoded data - if six.PY3: - data = {b'form': [b'test']} - else: - data = {'form': ['test']} + data = {'form': ['test']} headers = { - 'Content-Type': 'application/x-www-form-urlencoded', + 'Content-Type': 'application/x-www-form-urlencoded; charset=UTF-8', 'St2-Trace-Tag': 'tag1' } @@ -335,7 +336,7 @@ def test_authentication_headers_should_be_removed(self, dispatch_mock): 'Cookie': 'foo=bar' } - self.app.post('/v1/webhooks/git', WEBHOOK_1, headers=headers) + self.app.post_json('/v1/webhooks/git', WEBHOOK_1, headers=headers) self.assertNotIn('St2-Api-Key', dispatch_mock.call_args[1]['payload']['headers']) self.assertNotIn('X-Auth-Token', dispatch_mock.call_args[1]['payload']['headers']) self.assertNotIn('Cookie', dispatch_mock.call_args[1]['payload']['headers']) diff --git a/st2common/st2common/router.py b/st2common/st2common/router.py index 29b34031b4..9fd98d84f8 100644 --- a/st2common/st2common/router.py +++ b/st2common/st2common/router.py @@ -28,7 +28,7 @@ import routes from six.moves.urllib import parse as urlparse # pylint: disable=import-error import webob -from webob import cookies, exc, Request +from webob import cookies, exc from webob.compat import url_unquote from st2common.exceptions import rbac as rbac_exc @@ -39,6 +39,7 @@ from st2common.rbac.backends import get_rbac_backend from st2common.util import date as date_utils from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_decode from st2common.util.jsonify import get_json_type_for_python_value from st2common.util.http import parse_content_type_header @@ -140,7 +141,28 @@ class NotFoundException(Exception): pass +class Request(webob.Request): + """ + Custom Request implementation which uses our custom and faster json serializer and deserializer. + """ + + def _json_body__get(self): + return json_decode(self.body.decode(self.charset)) + + def _json_body__set(self, value): + self.body = json_encode(value) + + def _json_body__del(self): + return super(Request, self)._json_body__del() + + json = json_body = property(_json_body__get, _json_body__set, _json_body__del) + + class Response(webob.Response): + """ + Custom Response implementation which uses our custom and faster json serializer and deserializer. + """ + def __init__(self, body=None, status=None, headerlist=None, app_iter=None, content_type=None, *args, **kwargs): # Do some sanity checking, and turn json_body into an actual body @@ -149,7 +171,8 @@ def __init__(self, body=None, status=None, headerlist=None, app_iter=None, conte json_body = kwargs.pop('json_body') else: json_body = kwargs.pop('json') - body = json_encode(json_body).encode('UTF-8') + + body = json_encode(json_body) if content_type is None: content_type = 'application/json' @@ -158,10 +181,11 @@ def __init__(self, body=None, status=None, headerlist=None, app_iter=None, conte *args, **kwargs) def _json_body__get(self): - return super(Response, self)._json_body__get() + return json_decode(self.body.decode(self.charset or 'utf-8')) + #return super(Response, self)._json_body__get() def _json_body__set(self, value): - self.body = json_encode(value).encode('UTF-8') + self.body = json_encode(value) def _json_body__del(self): return super(Response, self)._json_body__del() diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index 1f47cec1b0..7e879c25d7 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -22,11 +22,14 @@ import json from json import JSONEncoder +import orjson + import six __all__ = [ 'json_encode', + 'json_decode,' 'json_loads', 'try_loads', @@ -42,8 +45,29 @@ def default(self, obj): # pylint: disable=method-hidden return JSONEncoder.default(self, obj) -def json_encode(obj, indent=4): - return json.dumps(obj, cls=GenericJSON, indent=indent) +def default(obj): + if hasattr(obj, '__json__') and six.callable(obj.__json__): + return obj.__json__() + elif isinstance(obj, bytes): + # TODO: We should update the code which passes bytes to pass unicode to avoid this + # conversion here + return obj.decode("utf-8") + raise TypeError + + +def json_encode(obj, indent=None): +#def json_encode(obj, indent=4): + if indent: + # NOTE: We don't use indent by default since it's quite a bit slower + option = orjson.OPT_INDENT_2 + else: + option = None + return orjson.dumps(obj, default=default, option=option) + #return json.dumps(obj, cls=GenericJSON, indent=indent) + + +def json_decode(data): + return orjson.loads(data) def load_file(path): diff --git a/st2common/st2common/util/ujson.py b/st2common/st2common/util/ujson.py index cace243448..37956da802 100644 --- a/st2common/st2common/util/ujson.py +++ b/st2common/st2common/util/ujson.py @@ -18,6 +18,7 @@ import copy import ujson +import orjson __all__ = [ 'fast_deepcopy' @@ -35,7 +36,10 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): # NOTE: ujson round-trip is up to 10 times faster on smaller and larger dicts compared # to copy.deepcopy(), but it has some edge cases with non-simple types such as datetimes - try: - value = ujson.loads(ujson.dumps(value)) + # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it + # to a RFC 3339 string by default + value = orjson.loads(orjson.dumps(value)) + #value = ujson.loads(ujson.dumps(value)) except (OverflowError, ValueError) as e: # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use # in our tests so we fall back to deep copy From 4ce29a7c621dcd46d5daade9268905b03c5d2d3c Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 14:22:39 +0100 Subject: [PATCH 02/39] Add WIP micro-benchmarks for fast_deepcopy() implementations. --- Makefile | 10 ++ .../benchmarks/micro/test_fast_deepcopy.py | 103 ++++++++++++++++++ test-requirements.txt | 2 + 3 files changed, 115 insertions(+) create mode 100644 st2common/benchmarks/micro/test_fast_deepcopy.py diff --git a/Makefile b/Makefile index 65ca6204ae..05b2698ebc 100644 --- a/Makefile +++ b/Makefile @@ -449,6 +449,16 @@ compilepy3: find ${ROOT_DIR}/st2common/st2common/ \( -name \*.py ! -name router\.py -name \*.py \) -type f -print0 | xargs -0 cat | grep st2stream; test $$? -eq 1 find ${ROOT_DIR}/st2common/st2common/ -name \*.py -type f -print0 | xargs -0 cat | grep st2exporter; test $$? -eq 1 +.PHONY: micro-benchmarks +micro-benchmarks: requirements .micro-benchmarks + +.PHONY: .micro-benchmarks +.micro-benchmarks: + @echo + @echo "==================== micro-benchmarks ====================" + @echo + . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:dict_keys_count_and_depth -s -v st2common/benchmarks/micro/test_fast_deepcopy.py + .PHONY: .cleanmongodb .cleanmongodb: @echo "==================== cleanmongodb ====================" diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py new file mode 100644 index 0000000000..bcde7a067e --- /dev/null +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -0,0 +1,103 @@ +# Copyright 2020 The StackStorm Authors. +# Copyright 2019 Extreme Networks, Inc. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Micro benchmark which compares the performance of or fast_deepcopy implementation using different +underlying implementations (copy.deepcopy, urjson, orjson). +""" + +# TODO: Also se actual orquesta context and execution fixture files which contain real life data +# with large text strings, different value types, etc. + +import copy +import random + +import pytest +import ujson +import orjson + + +def generate_random_dict(keys_count=10, depth=1): + """ + Generate a dictionary with fixed random values. + """ + result = {} + + keys = list(range(0, keys_count)) + random.shuffle(keys) + + current = {} + result = current + + for index in range(0, depth): + current["depth_%s" % (index)] = {} + + current = current["depth_%s" % (index)] + + for key in keys: + current["key_%s" % (key)] = "value_%s" % (key) + + return result + + +@pytest.mark.parametrize( + "implementation", + [ + "copy_deepcopy", + "ujson", + "orjson" + ], + ids=[ + "copy_deepcopy", + "ujson", + "orjson", + ], +) +@pytest.mark.parametrize( + "dict_keys_count_and_depth", + [ + (10, 1), + (100, 1), + (1000, 1), + (10, 10), + (100, 10), + (1000, 10), + ], + ids=[ + "10_1_attributes", + "100_1_attributes", + "1000_1_attributes", + "10_10_attributes", + "100_10_attributes", + "1000_10_attributes", + ], +) +@pytest.mark.benchmark(group="fast_deepcopy") +def test_fast_deepcopy_with_dict_values(benchmark, dict_keys_count_and_depth, implementation): + dict_keys, dict_depth = dict_keys_count_and_depth + data = generate_random_dict(keys_count=dict_keys, depth=dict_depth) + + def run_benchmark(): + if implementation == "copy_deepcopy": + return copy.deepcopy(data) + elif implementation == "ujson": + return ujson.loads(ujson.dumps(data)) + elif implementation == "orjson": + return orjson.loads(orjson.dumps(data)) + else: + raise ValueError("Invalid implementation: %s" % (implementation)) + + result = benchmark.pedantic(run_benchmark, iterations=50, rounds=50) + assert result == data, "Output is not the same as the input" diff --git a/test-requirements.txt b/test-requirements.txt index 6ca0e9608d..d5c8e9ddfd 100644 --- a/test-requirements.txt +++ b/test-requirements.txt @@ -29,3 +29,5 @@ rstcheck>=3.3.1,<3.4 tox==3.14.1 pyrabbit pip-tools # For pip-compile, to check for version conflicts +pytest==5.4.3 +pytest-benchmark==3.2.3 From a05cbc2e7a2a7abe0170f9c6b8a08dcda465d26d Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 14:34:06 +0100 Subject: [PATCH 03/39] Update more code. --- st2common/st2common/util/jsonify.py | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index 7e879c25d7..be2c961230 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -29,7 +29,8 @@ __all__ = [ 'json_encode', - 'json_decode,' + 'json_decode', + 'json_loads', 'try_loads', @@ -58,11 +59,10 @@ def default(obj): def json_encode(obj, indent=None): #def json_encode(obj, indent=4): if indent: - # NOTE: We don't use indent by default since it's quite a bit slower - option = orjson.OPT_INDENT_2 - else: - option = None - return orjson.dumps(obj, default=default, option=option) + return orjson.dumps(obj, default=default, option=orjson.OPT_INDENT_2) + + # NOTE: We don't use indent by default since it's quite a bit slower + return orjson.dumps(obj, default=default) #return json.dumps(obj, cls=GenericJSON, indent=indent) @@ -96,7 +96,7 @@ def json_loads(obj, keys=None): for key in keys: try: - obj[key] = json.loads(obj[key]) + obj[key] = json_decode(obj[key]) except: pass return obj @@ -104,7 +104,7 @@ def json_loads(obj, keys=None): def try_loads(s): try: - return json.loads(s) if s and isinstance(s, six.string_types) else s + return json_decode(s) if s and isinstance(s, six.string_types) else s except: return s From 6db1daf93aa4712cb8b4a0327f3370103a2da65d Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 17:31:46 +0100 Subject: [PATCH 04/39] Add another micro benchmarks for fast_deepcopy which utilizes actual JSON fixture file. --- Makefile | 3 +- st2common/benchmarks/fixtures/json/rows.json | 7089 +++++++++++++++++ .../benchmarks/micro/test_fast_deepcopy.py | 49 + 3 files changed, 7140 insertions(+), 1 deletion(-) create mode 100644 st2common/benchmarks/fixtures/json/rows.json diff --git a/Makefile b/Makefile index 05b2698ebc..aa27d2b62a 100644 --- a/Makefile +++ b/Makefile @@ -457,7 +457,8 @@ micro-benchmarks: requirements .micro-benchmarks @echo @echo "==================== micro-benchmarks ====================" @echo - . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:dict_keys_count_and_depth -s -v st2common/benchmarks/micro/test_fast_deepcopy.py + . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:dict_keys_count_and_depth -s -v st2common/benchmarks/micro/test_fast_deepcopy.py -k "test_fast_deepcopy_with_dict_values" + . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:fixture_file -s -v st2common/benchmarks/micro/test_fast_deepcopy.py -k "test_fast_deepcopy_with_json_fixture_file" .PHONY: .cleanmongodb .cleanmongodb: diff --git a/st2common/benchmarks/fixtures/json/rows.json b/st2common/benchmarks/fixtures/json/rows.json new file mode 100644 index 0000000000..1fc38c22d0 --- /dev/null +++ b/st2common/benchmarks/fixtures/json/rows.json @@ -0,0 +1,7089 @@ +{ + "meta" : { + "view" : { + "id" : "rybz-nyjw", + "name" : "Accidental Drug Related Deaths 2012-2018", + "assetType" : "dataset", + "attribution" : "Office of the Chief Medical Examiner", + "attributionLink" : "http://www.ct.gov/ocme", + "averageRating" : 0, + "category" : "Health and Human Services", + "createdAt" : 1444407518, + "description" : "A listing of each accidental death associated with drug overdose in Connecticut from 2012 to 2018. A \"Y\" value under the different substance columns indicates that particular substance was detected.\n\nData are derived from an investigation by the Office of the Chief Medical Examiner which includes the toxicity report, death certificate, as well as a scene investigation.\n\nThe “Morphine (Not Heroin)” values are related to the differences between how Morphine and Heroin are metabolized and therefor detected in the toxicity results. Heroin metabolizes to 6-MAM which then metabolizes to morphine. 6-MAM is unique to heroin, and has a short half-life (as does heroin itself). Thus, in some heroin deaths, the toxicity results will not indicate whether the morphine is from heroin or prescription morphine. In these cases the Medical Examiner may be able to determine the cause based on the scene investigation (such as finding heroin needles). 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null, null, null, null, null, "Accident", [ "{\"address\": \"\", \"city\": \"WATERFORD\", \"state\": \"CT\", \"zip\": \"\"}", "41.342158", "-72.125831", null, false ], [ "{\"address\": \"\", \"city\": \"WATERFORD\", \"state\": \"CT\", \"zip\": \"\"}", "41.342158", "-72.125831", null, false ], [ "{\"address\": \"\", \"city\": \"\", \"state\": \"CT\", \"zip\": \"\"}", "41.575155", "-72.738288", null, false ], "152" ] +, [ "row-5qfc.gzqu.azef", "00000000-0000-0000-D62C-6598E4F0EDAF", 0, 1555641670, null, 1557088573, null, "{ }", "18-0206", "2018-03-17T00:00:00", "DateReported", "37", "Male", "White", "ESSEX", "MIDDLESEX", "CT", "ESSEX", "MIDDLESEX", "Residence", null, "Substance Abuse", "Residence", "ESSEX", "MIDDLESEX", null, "Acute Intoxication due to the Combined Effects ofCocaine, Fentanyl, Flubromazolam, Heroin, and Methamphetamine", null, "Y", "Y", "Y", null, null, null, null, null, null, null, "Y", null, null, null, null, null, "Y", "Accident", [ "{\"address\": \"\", \"city\": \"Essex\", \"state\": \"CT\", \"zip\": \"\"}", "41.353832", "-72.396436", null, false ], [ "{\"address\": \"\", \"city\": \"ESSEX\", \"state\": \"CT\", \"zip\": \"\"}", "41.353832", "-72.396436", null, false ], [ "{\"address\": \"\", \"city\": \"ESSEX\", \"state\": \"CT\", \"zip\": \"\"}", "41.353832", "-72.396436", null, false ], "50" ] +, [ "row-fdyb_r44c~pxzz", "00000000-0000-0000-4BED-DB0B2C34E51B", 0, 1555641670, null, 1557088573, null, "{ }", "16-0520", "2016-07-31T00:00:00", "DateofDeath", "54", "Female", "White", "BETHEL", "FAIRFIELD", "CT", "BETHEL", null, "Residence", null, "substance abuse", "Residence", "BETHEL", null, null, "Acute Intoxication The Combined Effects of Fentanyl, Heroin, and Cocaine", null, "Y", "Y", "Y", null, null, null, null, null, null, null, null, null, null, null, null, null, "Y", "Accident", [ "{\"address\": \"\", \"city\": \"BETHEL\", \"state\": \"CT\", \"zip\": \"\"}", "41.371727", "-73.407448", null, false ], [ "{\"address\": \"\", \"city\": \"BETHEL\", \"state\": \"CT\", \"zip\": \"\"}", "41.371727", "-73.407448", null, false ], [ "{\"address\": \"\", \"city\": \"BETHEL\", \"state\": \"CT\", \"zip\": \"\"}", "41.371727", "-73.407448", null, false ], "9" ] +, [ "row-pcsy.9yw3.ur3p", "00000000-0000-0000-02C7-7B0D91587E6B", 0, 1555641670, null, 1557088573, null, "{ }", "17-0947", "2017-12-02T00:00:00", "DateReported", "28", "Female", "White", "MIDDLETOWN", "MIDDLESEX", "CT", "MIDDLETOWN", "MIDDLESEX", "Residence", null, "Substance abuse", "Residence", "MIDDLETOWN", "MIDDLESEX", "CT", "ACUTE COMBINED FENTANYL, METHADONE, ALCOHOL AND COCAINE TOXICITIES", null, null, "Y", "Y", null, null, null, "Y", null, null, "Y", null, null, null, null, null, null, null, "Accident", [ "{\"address\": \"\", \"city\": \"Middletown\", \"state\": \"CT\", \"zip\": \"\"}", "41.544654", "-72.651713", null, false ], [ "{\"address\": \"\", \"city\": \"MIDDLETOWN\", \"state\": \"CT\", \"zip\": \"\"}", "41.544654", "-72.651713", null, false ], [ "{\"address\": \"\", \"city\": \"MIDDLETOWN\", \"state\": \"CT\", \"zip\": \"\"}", "41.544654", "-72.651713", null, false ], "83" ] +, [ "row-r48s-cuyh.zxkp", "00000000-0000-0000-9F50-25F1B1CA5C44", 0, 1555641670, null, 1557088573, null, "{ }", "14-0166", "2014-04-17T00:00:00", "DateofDeath", "56", "Male", "White", "PLYMOUTH", null, null, "PLYMOUTH", "LITCHFIELD", "Residence", null, "Ingestion", "Residence", null, null, null, "Methadone Intoxication", "Chronic Alcohol Abuse", null, null, null, null, null, null, null, null, null, "Y", null, null, null, null, null, null, null, "Accident", [ "{\"address\": \"\", \"city\": \"PLYMOUTH\", \"state\": \"CT\", \"zip\": \"\"}", "41.671982", "-73.052909", null, false ], [ "{\"address\": \"\", \"city\": \"PLYMOUTH\", \"state\": \"CT\", \"zip\": \"\"}", "41.671982", "-73.052909", null, false ], [ "{\"address\": \"\", \"city\": \"\", \"state\": \"CT\", \"zip\": \"\"}", "41.575155", "-72.738288", null, false ], "111" ] +, [ "row-2cqw.zp2j.gn4b", "00000000-0000-0000-1D92-C25382F29183", 0, 1555641670, null, 1557088573, null, "{ }", "15-0013", "2015-01-07T00:00:00", "DateReported", "45", "Female", "White", "WATERBURY", "NEW HAVEN", "CT", "WATERBURY", "NEW HAVEN", "Residence", null, null, "Residence", null, null, null, "Intoxication due to the combined effects of Cocaine and Heroin", null, "Y", "Y", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "Y", "Accident", [ "{\"address\": \"\", \"city\": \"WATERBURY\", \"state\": \"CT\", \"zip\": \"\"}", "41.554261", "-73.043069", null, false ], [ "{\"address\": \"\", \"city\": \"WATERBURY\", \"state\": \"CT\", \"zip\": \"\"}", "41.554261", "-73.043069", null, false ], [ "{\"address\": \"\", \"city\": \"\", \"state\": \"CT\", \"zip\": \"\"}", "41.575155", "-72.738288", null, false ], "151" ] +, [ "row-jv6e.nxky-7nfs", "00000000-0000-0000-D810-3FA8B0EB6F37", 0, 1555641670, null, 1557088573, null, "{ }", "15-0466", "2015-09-08T00:00:00", "DateReported", "43", "Male", "White", "CHESHIRE", "NEW HAVEN", "CT", "CHESHIRE", "NEW HAVEN", "Residence", null, null, "Residence", null, null, null, "Acute Intoxication due to the Combined Effects of Ethanol, Diazepam, and Chlordiazepoxide", null, null, null, null, null, null, null, "Y", null, "Y", null, null, null, null, null, null, null, null, "Accident", [ "{\"address\": \"\", \"city\": \"CHESHIRE\", \"state\": \"CT\", \"zip\": \"\"}", "41.498834", "-72.901448", null, false ], [ "{\"address\": \"\", \"city\": \"CHESHIRE\", \"state\": \"CT\", \"zip\": \"\"}", "41.498834", "-72.901448", null, false ], [ "{\"address\": \"\", \"city\": \"\", \"state\": \"CT\", \"zip\": \"\"}", "41.575155", "-72.738288", null, false ], "25" ] +, [ "row-t4vf-nwk8.vqmv", "00000000-0000-0000-5908-8BA9C24BC565", 0, 1555641670, null, 1557088573, null, "{ }", "17-0618", "2017-07-22T00:00:00", "DateReported", "21", "Male", "White", "MADISON", "NEW HAVEN", "CT", "NEW HAVEN", "NEW HAVEN", "Hospital", null, "Drug Abuse", "In 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Tramadol", null, "Y", null, "Y", "Y", null, null, null, null, null, null, null, "Y", null, null, null, null, "Y", "Accident", [ "{\"address\": \"\", \"city\": \"DANBURY\", \"state\": \"CT\", \"zip\": \"\"}", "41.393666", "-73.451539", null, false ], null, [ "{\"address\": \"\", \"city\": \"DANBURY\", \"state\": \"CT\", \"zip\": \"\"}", "41.393666", "-73.451539", null, false ], "34" ] +, [ "row-cejh-i5zh.n9pz", "00000000-0000-0000-26C9-A1939C2E74A0", 0, 1555641670, null, 1557088573, null, "{ }", "14-0124", "2014-03-16T00:00:00", "DateofDeath", "33", "Male", "White", "HARTFORD", null, null, "WINDSOR", null, "Other", null, "Substance Abuse", "Hotel or Motel", null, null, null, "Acute Fentanyl intoxication", "Cardiac hypertrophy", null, null, "Y", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "Accident", [ "{\"address\": \"\", \"city\": \"WINDSOR\", \"state\": \"CT\", \"zip\": \"\"}", "41.852781", "-72.64379", null, false ], [ "{\"address\": \"\", \"city\": \"HARTFORD\", \"state\": \"CT\", \"zip\": \"\"}", "41.765775", "-72.673356", null, false ], [ "{\"address\": \"\", \"city\": \"\", \"state\": \"CT\", \"zip\": \"\"}", "41.575155", "-72.738288", null, false ], "164" ] +, [ "row-cjy7-st4h_g8p8", "00000000-0000-0000-3BBC-6376C3D10123", 0, 1555641670, null, 1557088573, null, "{ }", "16-0637", "2016-09-15T00:00:00", "DateofDeath", "33", "Male", "White", "THOMASTON", "LITCHFIELD", "CT", "WATERBURY", null, "Other", "By Railroad Tracks", "Substance Abuse", "Railroad Track", "WATERBURY, CT", null, null, "Acute Heroin Intoxication", null, "Y", null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, "Y", "Accident", [ "{\"address\": \"\", \"city\": \"WATERBURY\", \"state\": \"CT\", \"zip\": \"\"}", "41.554261", "-73.043069", null, false ], [ "{\"address\": \"\", \"city\": \"THOMASTON\", \"state\": \"CT\", \"zip\": \"\"}", "41.674124", "-73.073189", null, false ], [ "{\"address\": \"\", \"city\": \"WATERBURY, CT\", \"state\": \"CT\", \"zip\": \"\"}", "41.554261", "-73.043069", null, false ], "151" ] + ] +} \ No newline at end of file diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py index bcde7a067e..33cb6b59dc 100644 --- a/st2common/benchmarks/micro/test_fast_deepcopy.py +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -21,6 +21,7 @@ # TODO: Also se actual orquesta context and execution fixture files which contain real life data # with large text strings, different value types, etc. +import os import copy import random @@ -28,6 +29,11 @@ import ujson import orjson +import json + +BASE_DIR = os.path.dirname(os.path.abspath(__file__)) +FIXTURES_DIR = os.path.abspath(os.path.join(BASE_DIR, "../fixtures/json")) + def generate_random_dict(keys_count=10, depth=1): """ @@ -101,3 +107,46 @@ def run_benchmark(): result = benchmark.pedantic(run_benchmark, iterations=50, rounds=50) assert result == data, "Output is not the same as the input" + + +@pytest.mark.parametrize( + "implementation", + [ + "copy_deepcopy", + "ujson", + "orjson" + ], + ids=[ + "copy_deepcopy", + "ujson", + "orjson", + ], +) +@pytest.mark.parametrize( + "fixture_file", + [ + "rows.json", + ], + ids=[ + "rows.json", + ], +) +@pytest.mark.benchmark(group="fast_deepcopy") +def test_fast_deepcopy_with_json_fixture_file(benchmark, fixture_file, implementation): + with open(os.path.join(FIXTURES_DIR, fixture_file), "r") as fp: + content = fp.read() + + data = json.loads(content) + + def run_benchmark(): + if implementation == "copy_deepcopy": + return copy.deepcopy(data) + elif implementation == "ujson": + return ujson.loads(ujson.dumps(data)) + elif implementation == "orjson": + return orjson.loads(orjson.dumps(data)) + else: + raise ValueError("Invalid implementation: %s" % (implementation)) + + result = benchmark.pedantic(run_benchmark, iterations=5, rounds=5) + assert result == data, "Output is not the same as the input" From 49709449016bc4f36e09643ade29aa6fc2f29ce6 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 18:02:37 +0100 Subject: [PATCH 05/39] Add new system.json_library config option which specifies which json library will be using for encoding and decoding. Default it to orjson and add some tests for it. --- st2common/requirements.txt | 1 + st2common/st2common/config.py | 6 +++- st2common/st2common/util/jsonify.py | 49 ++++++++++++++++++++++++---- st2common/tests/unit/test_jsonify.py | 47 ++++++++++++++++++++++++++ 4 files changed, 96 insertions(+), 7 deletions(-) diff --git a/st2common/requirements.txt b/st2common/requirements.txt index c3ee24e5f3..6b7e6e8c70 100644 --- a/st2common/requirements.txt +++ b/st2common/requirements.txt @@ -37,5 +37,6 @@ semver==2.9.0 six==1.13.0 tooz==2.8.0 ujson==1.35 +orjson==3.4.8 webob==1.8.5 zake==0.2.2 diff --git a/st2common/st2common/config.py b/st2common/st2common/config.py index 8ad77fa626..b1a3a54845 100644 --- a/st2common/st2common/config.py +++ b/st2common/st2common/config.py @@ -116,7 +116,11 @@ def register_opts(ignore_errors=False): 'inside the sensor. By default, only payload for system triggers is validated.'), cfg.BoolOpt( 'validate_output_schema', default=False, - help='True to validate action and runner output against schema.') + help='True to validate action and runner output against schema.'), + cfg.StrOpt( + 'json_library', default='orjson', choices='orjson, json', + help='Which JSON library to use for serializing / de-serializing data (orjson, json).'), + ] do_register_opts(system_opts, 'system', ignore_errors) diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index be2c961230..424cb17564 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -22,9 +22,9 @@ import json from json import JSONEncoder -import orjson - import six +import orjson +from oslo_config import cfg __all__ = [ @@ -56,20 +56,57 @@ def default(obj): raise TypeError -def json_encode(obj, indent=None): -#def json_encode(obj, indent=4): +def json_encode_native_json(obj, indent=4): + return json.dumps(obj, cls=GenericJSON, indent=indent) + + +def json_encode_orjson(obj, indent=None): if indent: return orjson.dumps(obj, default=default, option=orjson.OPT_INDENT_2) # NOTE: We don't use indent by default since it's quite a bit slower return orjson.dumps(obj, default=default) - #return json.dumps(obj, cls=GenericJSON, indent=indent) -def json_decode(data): +def json_decode_native_json(data): + return json.loads(data) + + +def json_decode_orjson(data): return orjson.loads(data) +def json_encode(obj, indent=None): + """ + Wrapper function for encoding the provided object. + + This function automatically select appropriate JSON library based on the configuration value. + + This function should be used everywhere in the code base where json.dumps() behavior is desired. + """ + if cfg.CONF.system.json_library == "json": + return json_encode_native_json(obj=obj, indent=indent) + elif cfg.CONF.system.json_library == "orjson": + return json_encode_orjson(obj=obj, indent=indent) + else: + raise ValueError("Unsupported json_library: %s" % (cfg.CONF.system.json_library)) + +def json_decode(data): + """ + Wrapper function for decoding the provided JSON string. + + This function automatically select appropriate JSON library based on the configuration value. + + This function should be used everywhere in the code base where json.loads() behavior is desired. + """ + if cfg.CONF.system.json_library == "json": + return json_decode_native_json(data=data) + elif cfg.CONF.system.json_library == "orjson": + return json_decode_orjson(data=data) + else: + raise ValueError("Unsupported json_library: %s" % (cfg.CONF.system.json_library)) + + def load_file(path): with open(path, 'r') as fd: return json.load(fd) diff --git a/st2common/tests/unit/test_jsonify.py b/st2common/tests/unit/test_jsonify.py index 801d912333..4ec4acbc6e 100644 --- a/st2common/tests/unit/test_jsonify.py +++ b/st2common/tests/unit/test_jsonify.py @@ -14,7 +14,14 @@ # limitations under the License. from __future__ import absolute_import + +import json + import unittest2 +from oslo_config import cfg + +import st2tests.config as tests_config +tests_config.parse_args() import st2common.util.jsonify as jsonify @@ -50,3 +57,43 @@ def test_try_loads(self): d = '{"a": 1, "b": true}' expected = {'a': 1, 'b': True} self.assertDictEqual(jsonify.try_loads(d), expected) + + def test_json_encode_decode_roundtrip_compatibility_between_different_libs(self): + class ObjectWithJsonMethod(object): + def __json__(self): + return {"mah": "json", "1": 2} + + input_data = [ + "1", + 1, + None, + True, + False, + [1, "a", True, None, [1, 2], {"a": "b", "c": 3}], + {"a": "b", "d": [1, 2, 3], "e": 5}, + ObjectWithJsonMethod(), + b"bytes", + ] + expected_data = [ + "1", + 1, + None, + True, + False, + [1, "a", True, None, [1, 2], {"a": "b", "c": 3}], + {"a": "b", "d": [1, 2, 3], "e": 5}, + {"mah": "json", "1": 2}, + "bytes", + ] + + json_libraries = ["json", "orjson"] + + for json_library in json_libraries: + cfg.CONF.set_override(name='json_library', override=json_library, group='system') + + result_encoded = jsonify.json_encode(input_data) + result_decoded = jsonify.json_decode(result_encoded) + result_decoded_native = json.loads(result_encoded) + + self.assertEqual(result_decoded, expected_data) + self.assertEqual(result_decoded, result_decoded_native) From e10295eba0a47209411a441a4e7960529d97c011 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 18:06:09 +0100 Subject: [PATCH 06/39] Also include json and simplejson in the benchmark. --- st2common/benchmarks/micro/test_fast_deepcopy.py | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py index 33cb6b59dc..f2ecce01c5 100644 --- a/st2common/benchmarks/micro/test_fast_deepcopy.py +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -24,6 +24,8 @@ import os import copy import random +import json +import simplejson import pytest import ujson @@ -113,11 +115,15 @@ def run_benchmark(): "implementation", [ "copy_deepcopy", + "json", + "simplejson", "ujson", "orjson" ], ids=[ "copy_deepcopy", + "json", + "simplejson", "ujson", "orjson", ], @@ -141,6 +147,10 @@ def test_fast_deepcopy_with_json_fixture_file(benchmark, fixture_file, implement def run_benchmark(): if implementation == "copy_deepcopy": return copy.deepcopy(data) + elif implementation == "json": + return json.loads(json.dumps(data)) + elif implementation == "simplejson": + return simplejson.loads(simplejson.dumps(data)) elif implementation == "ujson": return ujson.loads(ujson.dumps(data)) elif implementation == "orjson": From f910be1685a04fb9d35b059dbeb04f427c6d4dae Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 18:25:59 +0100 Subject: [PATCH 07/39] More tests and changes for cross compatibility. --- st2common/st2common/util/jsonify.py | 31 ++++++++++++++++++++-------- st2common/tests/unit/test_jsonify.py | 28 +++++++++++++++++++++++++ 2 files changed, 50 insertions(+), 9 deletions(-) diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index 424cb17564..ecb0cecfa1 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -56,16 +56,29 @@ def default(obj): raise TypeError -def json_encode_native_json(obj, indent=4): - return json.dumps(obj, cls=GenericJSON, indent=indent) +def json_encode_native_json(obj, indent=4, sort_keys=False): + if not indent: + separators = separators=(',', ':') + else: + separators = None + return json.dumps(obj, cls=GenericJSON, indent=indent, separators=separators, + sort_keys=sort_keys) + +def json_encode_orjson(obj, indent=None, sort_keys=False): + option = None -def json_encode_orjson(obj, indent=None): if indent: - return orjson.dumps(obj, default=default, option=orjson.OPT_INDENT_2) + # NOTE: We don't use indent by default since it's quite a bit slower + option = orjson.OPT_INDENT_2 + + if sort_keys: + option = option | orjson.OPT_SORT_KEYS if option else orjson.OPT_SORT_KEYS + + if option: + return orjson.dumps(obj, default=default, option=option).decode("utf-8") - # NOTE: We don't use indent by default since it's quite a bit slower - return orjson.dumps(obj, default=default) + return orjson.dumps(obj, default=default).decode("utf-8") def json_decode_native_json(data): @@ -76,7 +89,7 @@ def json_decode_orjson(data): return orjson.loads(data) -def json_encode(obj, indent=None): +def json_encode(obj, indent=None, sort_keys=False): """ Wrapper function for encoding the provided object. @@ -85,9 +98,9 @@ def json_encode(obj, indent=None): This function should be used everywhere in the code base where json.dumps() behavior is desired. """ if cfg.CONF.system.json_library == "json": - return json_encode_native_json(obj=obj, indent=indent) + return json_encode_native_json(obj=obj, indent=indent, sort_keys=sort_keys) elif cfg.CONF.system.json_library == "orjson": - return json_encode_orjson(obj=obj, indent=indent) + return json_encode_orjson(obj=obj, indent=indent, sort_keys=sort_keys) else: raise ValueError("Unsupported json_library: %s" % (cfg.CONF.system.json_library)) diff --git a/st2common/tests/unit/test_jsonify.py b/st2common/tests/unit/test_jsonify.py index 4ec4acbc6e..e2165b2e7e 100644 --- a/st2common/tests/unit/test_jsonify.py +++ b/st2common/tests/unit/test_jsonify.py @@ -97,3 +97,31 @@ def __json__(self): self.assertEqual(result_decoded, expected_data) self.assertEqual(result_decoded, result_decoded_native) + + def test_json_encode_decode_sort_keys_indent_compatibility_between_different_libs(self): + input_data = { + "d": 4, + "a": 1, + "b": 2, + "c": 3, + } + + # 1. indent=None + result_orjson = jsonify.json_encode_orjson(input_data, indent=None) + result_native = jsonify.json_encode_native_json(input_data, indent=None) + self.assertEqual(result_orjson, result_native) + + # 2. indent=2 (only mode orjson supports) + result_orjson = jsonify.json_encode_orjson(input_data, indent=2) + result_native = jsonify.json_encode_native_json(input_data, indent=2) + self.assertEqual(result_orjson, result_native) + + # 3. indent=None, sort_keys=True + result_orjson = jsonify.json_encode_orjson(input_data, indent=None, sort_keys=True) + result_native = jsonify.json_encode_native_json(input_data, indent=None, sort_keys=True) + self.assertEqual(result_orjson, result_native) + + # 4. indent=2 + sort_keys=True + result_orjson = jsonify.json_encode_orjson(input_data, indent=2, sort_keys=True) + result_native = jsonify.json_encode_native_json(input_data, indent=2, sort_keys=True) + self.assertEqual(result_orjson, result_native) From 19357c4a3e875954475376af263887637a7ed81a Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:12:30 +0100 Subject: [PATCH 08/39] More compatibility fixes. --- st2common/st2common/middleware/error_handling.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/st2common/st2common/middleware/error_handling.py b/st2common/st2common/middleware/error_handling.py index 478cf3691b..532463dd71 100644 --- a/st2common/st2common/middleware/error_handling.py +++ b/st2common/st2common/middleware/error_handling.py @@ -100,9 +100,15 @@ def __call__(self, environ, start_response): body['faultstring'] = message response_body = json_encode(body) + headers = { 'Content-Type': 'application/json', - 'Content-Length': str(len(response_body)) + # NOTE: We need to use the length of the byte string here otherwise it won't + # work correctly when returning an unicode response- here we would measure number + # of characters instead of actual byte length. + # Another option would also be to not set it here and let webob set it when sending + # the response. + 'Content-Length': str(len(response_body.encode("utf-8"))) } resp = Response(response_body, status=status_code, headers=headers) From 2d38d2c2ade1cf9828cbbf2de9152b08bd0465eb Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:13:29 +0100 Subject: [PATCH 09/39] Update more code to use json_encode / json_decode wrapper functions. --- st2common/st2common/models/db/stormbase.py | 4 ++-- st2common/st2common/models/db/trigger.py | 5 +++-- st2common/st2common/router.py | 8 ++++---- st2common/st2common/runners/parallel_ssh.py | 9 +++++---- st2common/st2common/services/packs.py | 9 +++++---- st2common/st2common/util/action_db.py | 7 ++----- st2common/st2common/util/casts.py | 5 +++-- st2common/st2common/util/crypto.py | 8 +++++--- st2common/st2common/util/jinja.py | 9 ++++++--- st2common/st2common/util/param.py | 6 ++++-- 10 files changed, 39 insertions(+), 31 deletions(-) diff --git a/st2common/st2common/models/db/stormbase.py b/st2common/st2common/models/db/stormbase.py index bf312c6e4f..7cf6f74ead 100644 --- a/st2common/st2common/models/db/stormbase.py +++ b/st2common/st2common/models/db/stormbase.py @@ -21,12 +21,12 @@ import six import mongoengine as me from oslo_config import cfg -import json from st2common.util import mongoescape from st2common.models.base import DictSerializableClassMixin from st2common.models.system.common import ResourceReference from st2common.constants.types import ResourceType +from st2common.util.jsonify import json_decode __all__ = [ 'StormFoundationDB', @@ -103,7 +103,7 @@ def to_serializable_dict(self, mask_secrets=False): if isinstance(v, JSON_UNFRIENDLY_TYPES): v = str(v) elif isinstance(v, me.EmbeddedDocument): - v = json.loads(v.to_json()) + v = json_decode(v.to_json()) serializable_dict[k] = v diff --git a/st2common/st2common/models/db/trigger.py b/st2common/st2common/models/db/trigger.py index 0546c3b739..82a3e6f7da 100644 --- a/st2common/st2common/models/db/trigger.py +++ b/st2common/st2common/models/db/trigger.py @@ -14,7 +14,7 @@ # limitations under the License. from __future__ import absolute_import -import json + import hashlib import mongoengine as me @@ -22,6 +22,7 @@ from st2common.models.db import MongoDBAccess from st2common.models.db import stormbase from st2common.constants.types import ResourceType +from st2common.util.jsonify import json_encode __all__ = [ 'TriggerTypeDB', @@ -107,7 +108,7 @@ def get_uid(self): # Note: We sort the resulting JSON object so that the same dictionary always results # in the same hash parameters = getattr(self, 'parameters', {}) - parameters = json.dumps(parameters, sort_keys=True) + parameters = json_encode(parameters, sort_keys=True) parameters = hashlib.md5(parameters.encode()).hexdigest() uid = uid + self.UID_SEPARATOR + parameters diff --git a/st2common/st2common/router.py b/st2common/st2common/router.py index 9fd98d84f8..980fa34407 100644 --- a/st2common/st2common/router.py +++ b/st2common/st2common/router.py @@ -39,6 +39,7 @@ from st2common.rbac.backends import get_rbac_backend from st2common.util import date as date_utils from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_encode_native_json from st2common.util.jsonify import json_decode from st2common.util.jsonify import get_json_type_for_python_value from st2common.util.http import parse_content_type_header @@ -150,7 +151,7 @@ def _json_body__get(self): return json_decode(self.body.decode(self.charset)) def _json_body__set(self, value): - self.body = json_encode(value) + self.body = json_encode(value).encode("utf-8") def _json_body__del(self): return super(Request, self)._json_body__del() @@ -172,7 +173,7 @@ def __init__(self, body=None, status=None, headerlist=None, app_iter=None, conte else: json_body = kwargs.pop('json') - body = json_encode(json_body) + body = json_encode(json_body).encode('utf-8') if content_type is None: content_type = 'application/json' @@ -182,10 +183,9 @@ def __init__(self, body=None, status=None, headerlist=None, app_iter=None, conte def _json_body__get(self): return json_decode(self.body.decode(self.charset or 'utf-8')) - #return super(Response, self)._json_body__get() def _json_body__set(self, value): - self.body = json_encode(value) + self.body = json_encode(value).encode('utf-8') def _json_body__del(self): return super(Response, self)._json_body__del() diff --git a/st2common/st2common/runners/parallel_ssh.py b/st2common/st2common/runners/parallel_ssh.py index 28f8756415..ea5d30ef93 100644 --- a/st2common/st2common/runners/parallel_ssh.py +++ b/st2common/st2common/runners/parallel_ssh.py @@ -15,7 +15,6 @@ from __future__ import absolute_import -import json import re import os import traceback @@ -27,9 +26,11 @@ from st2common.runners.paramiko_ssh import SSHCommandTimeoutError from st2common import log as logging from st2common.exceptions.ssh import NoHostsConnectedToException -import st2common.util.jsonify as jsonify from st2common.util import ip_utils from st2common.util import concurrency as concurrency_lib +from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_loads + LOG = logging.getLogger(__name__) @@ -102,7 +103,7 @@ def connect(self, raise_on_any_error=False): LOG.error('Unable to connect to any of the hosts.', extra={'connect_results': results}) msg = ('Unable to connect to any one of the hosts: %s.\n\n connect_errors=%s' % - (self._hosts, json.dumps(results, indent=2))) + (self._hosts, json_encode(results, indent=2))) raise NoHostsConnectedToException(msg) return results @@ -362,7 +363,7 @@ def _handle_command_result(self, stdout, stderr, exit_code): result_dict = {'stdout': stdout, 'stderr': stderr, 'return_code': exit_code, 'succeeded': is_succeeded, 'failed': not is_succeeded} - result = jsonify.json_loads(result_dict, ParallelSSHClient.KEYS_TO_TRANSFORM) + result = json_loads(result_dict, ParallelSSHClient.KEYS_TO_TRANSFORM) return result @staticmethod diff --git a/st2common/st2common/services/packs.py b/st2common/st2common/services/packs.py index 7088b5f368..f016bb06b0 100644 --- a/st2common/st2common/services/packs.py +++ b/st2common/st2common/services/packs.py @@ -14,17 +14,18 @@ # limitations under the License. from __future__ import absolute_import + import itertools -import json import requests import six +from six.moves import range from oslo_config import cfg from st2common import log as logging from st2common.persistence.pack import Pack from st2common.util.misc import lowercase_value -from six.moves import range +from st2common.util.jsonify import json_encode __all__ = [ 'get_pack_by_ref', @@ -118,7 +119,7 @@ def _fetch_and_compile_index(index_urls, logger=None, proxy_config=None): index_status['message'] = 'Index object is missing "packs" attribute.' if index_status['error']: - logger.error("Index parsing error: %s" % json.dumps(index_status, indent=4)) + logger.error("Index parsing error: %s" % json_encode(index_status, indent=4)) else: # TODO: Notify on a duplicate pack aka pack being overwritten from a different index packs_data = index_json['packs'] @@ -159,7 +160,7 @@ def fetch_pack_index(index_url=None, logger=None, allow_empty=False, proxy_confi raise ValueError("No results from the %s: tried %s.\nStatus: %s" % ( ("index" if len(index_urls) == 1 else "indexes"), ", ".join(index_urls), - json.dumps(status, indent=4) + json_encode(status, indent=4) )) return (index, status) diff --git a/st2common/st2common/util/action_db.py b/st2common/st2common/util/action_db.py index 610b698c18..f1d80414cb 100644 --- a/st2common/st2common/util/action_db.py +++ b/st2common/st2common/util/action_db.py @@ -14,10 +14,6 @@ # limitations under the License. from __future__ import absolute_import -try: - import simplejson as json -except ImportError: - import json from collections import OrderedDict @@ -37,6 +33,7 @@ from st2common.persistence.runner import RunnerType from st2common.metrics.base import get_driver from st2common.util import output_schema +from st2common.util.jsonify import json_encode LOG = logging.getLogger(__name__) @@ -289,7 +286,7 @@ def serialize_positional_argument(argument_type, argument_value): argument_value = ','.join(map(str, argument_value)) if argument_value else '' elif argument_type == 'object': # Objects are serialized as JSON - argument_value = json.dumps(argument_value) if argument_value else '' + argument_value = json_encode(argument_value) if argument_value else '' elif argument_type == 'null': # None / null is serialized as en empty string argument_value = '' diff --git a/st2common/st2common/util/casts.py b/st2common/st2common/util/casts.py index fa94272e47..fd8818f1fd 100644 --- a/st2common/st2common/util/casts.py +++ b/st2common/st2common/util/casts.py @@ -15,13 +15,14 @@ # limitations under the License. from __future__ import absolute_import + import ast -import json import six from st2common.expressions.functions import data from st2common.util.compat import to_unicode +from st2common.util.jsonify import json_decode def _cast_object(x): @@ -34,7 +35,7 @@ def _cast_object(x): if isinstance(x, six.string_types): try: - return json.loads(x) + return json_decode(x) except: return ast.literal_eval(x) else: diff --git a/st2common/st2common/util/crypto.py b/st2common/st2common/util/crypto.py index 230c4ada8e..7b55ac3ea9 100644 --- a/st2common/st2common/util/crypto.py +++ b/st2common/st2common/util/crypto.py @@ -35,7 +35,6 @@ from __future__ import absolute_import import os -import json import binascii import base64 @@ -50,6 +49,9 @@ from cryptography.hazmat.primitives import hmac from cryptography.hazmat.backends import default_backend +from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_decode + __all__ = [ 'KEYCZAR_HEADER_SIZE', 'KEYCZAR_AES_BLOCK_SIZE', @@ -148,7 +150,7 @@ def to_json(self): 'mode': self.mode.upper(), 'size': int(self.size) } - return json.dumps(data) + return json_encode(data) def __repr__(self): return ('' % (self.hmac_key_size, self.mode, @@ -167,7 +169,7 @@ def read_crypto_key(key_path): with open(key_path, 'r') as fp: content = fp.read() - content = json.loads(content) + content = json_decode(content) try: aes_key = AESKey(aes_key_string=content['aesKeyString'], diff --git a/st2common/st2common/util/jinja.py b/st2common/st2common/util/jinja.py index 9234986f9f..54ab0c3cd7 100644 --- a/st2common/st2common/util/jinja.py +++ b/st2common/st2common/util/jinja.py @@ -14,12 +14,15 @@ # limitations under the License. from __future__ import absolute_import -import json + import re + import six from st2common import log as logging from st2common.util.compat import to_unicode +from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_decode __all__ = [ @@ -139,7 +142,7 @@ def render_values(mapping=None, context=None, allow_undefined=False): # jinja2 works with string so transform list and dict to strings. reverse_json_dumps = False if isinstance(v, dict) or isinstance(v, list): - v = json.dumps(v) + v = json_encode(v) reverse_json_dumps = True else: # Special case for text type to handle unicode @@ -164,7 +167,7 @@ def render_values(mapping=None, context=None, allow_undefined=False): rendered_mapping[k] = mapping[k] continue if reverse_json_dumps: - rendered_v = json.loads(rendered_v) + rendered_v = json_decode(rendered_v) rendered_mapping[k] = rendered_v LOG.info('Mapping: %s, rendered_mapping: %s, context: %s', mapping, rendered_mapping, context) return rendered_mapping diff --git a/st2common/st2common/util/param.py b/st2common/st2common/util/param.py index 93507fcd87..62a4c3b58f 100644 --- a/st2common/st2common/util/param.py +++ b/st2common/st2common/util/param.py @@ -33,6 +33,8 @@ from st2common.util.casts import get_cast from st2common.util.compat import to_unicode from st2common.util import jinja as jinja_utils +from st2common.util.jsonify import json_encode +from st2common.util.jsonify import json_decode LOG = logging.getLogger(__name__) @@ -186,7 +188,7 @@ def _render(node, render_context): complex_type = False if isinstance(node['template'], list) or isinstance(node['template'], dict): - node['template'] = json.dumps(node['template']) + node['template'] = json_encode(node['template']) # Finds occurrences of "{{variable}}" and adds `to_complex` filter # so types are honored. If it doesn't follow that syntax then it's @@ -205,7 +207,7 @@ def _render(node, render_context): LOG.debug('Render complete: %s', result) if complex_type: - result = json.loads(result) + result = json_decode(result) LOG.debug('Complex Type Rendered: %s', result) return result From f6aa540b74c3fe23f941554a258e830ce40d6be2 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:16:47 +0100 Subject: [PATCH 10/39] Fix lint. --- st2common/benchmarks/micro/test_fast_deepcopy.py | 2 -- st2common/st2common/router.py | 4 ++-- st2common/st2common/util/jsonify.py | 5 +++-- st2common/st2common/util/param.py | 2 +- st2common/st2common/util/ujson.py | 1 - 5 files changed, 6 insertions(+), 8 deletions(-) diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py index f2ecce01c5..2060844d49 100644 --- a/st2common/benchmarks/micro/test_fast_deepcopy.py +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -31,8 +31,6 @@ import ujson import orjson -import json - BASE_DIR = os.path.dirname(os.path.abspath(__file__)) FIXTURES_DIR = os.path.abspath(os.path.join(BASE_DIR, "../fixtures/json")) diff --git a/st2common/st2common/router.py b/st2common/st2common/router.py index 980fa34407..551f9f0712 100644 --- a/st2common/st2common/router.py +++ b/st2common/st2common/router.py @@ -39,7 +39,6 @@ from st2common.rbac.backends import get_rbac_backend from st2common.util import date as date_utils from st2common.util.jsonify import json_encode -from st2common.util.jsonify import json_encode_native_json from st2common.util.jsonify import json_decode from st2common.util.jsonify import get_json_type_for_python_value from st2common.util.http import parse_content_type_header @@ -161,7 +160,8 @@ def _json_body__del(self): class Response(webob.Response): """ - Custom Response implementation which uses our custom and faster json serializer and deserializer. + Custom Response implementation which uses our custom and faster json serializer and + deserializer. """ def __init__(self, body=None, status=None, headerlist=None, app_iter=None, content_type=None, diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index ecb0cecfa1..bbed6fb266 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -52,13 +52,13 @@ def default(obj): elif isinstance(obj, bytes): # TODO: We should update the code which passes bytes to pass unicode to avoid this # conversion here - return obj.decode("utf-8") + return obj.decode("utf-8") raise TypeError def json_encode_native_json(obj, indent=4, sort_keys=False): if not indent: - separators = separators=(',', ':') + separators = (',', ':') else: separators = None return json.dumps(obj, cls=GenericJSON, indent=indent, separators=separators, @@ -104,6 +104,7 @@ def json_encode(obj, indent=None, sort_keys=False): else: raise ValueError("Unsupported json_library: %s" % (cfg.CONF.system.json_library)) + def json_decode(data): """ Wrapper function for decoding the provided JSON string. diff --git a/st2common/st2common/util/param.py b/st2common/st2common/util/param.py index 62a4c3b58f..294e81bf43 100644 --- a/st2common/st2common/util/param.py +++ b/st2common/st2common/util/param.py @@ -14,7 +14,7 @@ # limitations under the License. from __future__ import absolute_import -import json + import re import six import networkx as nx diff --git a/st2common/st2common/util/ujson.py b/st2common/st2common/util/ujson.py index 37956da802..7d9186b522 100644 --- a/st2common/st2common/util/ujson.py +++ b/st2common/st2common/util/ujson.py @@ -17,7 +17,6 @@ import copy -import ujson import orjson __all__ = [ From 205beb3a05f58e54ee5e04b813e3880012f2d825 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:18:52 +0100 Subject: [PATCH 11/39] Use better module name. --- .../action_chain_runner/action_chain_runner.py | 2 +- st2common/st2common/models/utils/action_param_utils.py | 2 +- st2common/st2common/util/{ujson.py => deep_copy.py} | 1 - st2common/st2common/util/mongoescape.py | 2 +- st2common/st2common/util/secrets.py | 2 +- st2common/tests/unit/test_misc_utils.py | 2 +- 6 files changed, 5 insertions(+), 6 deletions(-) rename st2common/st2common/util/{ujson.py => deep_copy.py} (97%) diff --git a/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py b/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py index 39cb873136..a20574489a 100644 --- a/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py +++ b/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py @@ -48,7 +48,7 @@ from st2common.util import jinja as jinja_utils from st2common.util import param as param_utils from st2common.util.config_loader import get_config -from st2common.util.ujson import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy __all__ = [ 'ActionChainRunner', diff --git a/st2common/st2common/models/utils/action_param_utils.py b/st2common/st2common/models/utils/action_param_utils.py index 1ecf6dbbe8..13c771de87 100644 --- a/st2common/st2common/models/utils/action_param_utils.py +++ b/st2common/st2common/models/utils/action_param_utils.py @@ -20,7 +20,7 @@ from st2common import log as logging from st2common.util import action_db as action_db_util from st2common.util.casts import get_cast -from st2common.util.ujson import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy LOG = logging.getLogger(__name__) diff --git a/st2common/st2common/util/ujson.py b/st2common/st2common/util/deep_copy.py similarity index 97% rename from st2common/st2common/util/ujson.py rename to st2common/st2common/util/deep_copy.py index 7d9186b522..b16a2d3c90 100644 --- a/st2common/st2common/util/ujson.py +++ b/st2common/st2common/util/deep_copy.py @@ -38,7 +38,6 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it # to a RFC 3339 string by default value = orjson.loads(orjson.dumps(value)) - #value = ujson.loads(ujson.dumps(value)) except (OverflowError, ValueError) as e: # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use # in our tests so we fall back to deep copy diff --git a/st2common/st2common/util/mongoescape.py b/st2common/st2common/util/mongoescape.py index 6d42b4972c..54b6acee40 100644 --- a/st2common/st2common/util/mongoescape.py +++ b/st2common/st2common/util/mongoescape.py @@ -18,7 +18,7 @@ import six from six.moves import zip -from st2common.util.ujson import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy # Note: Because of old rule escaping code, two different characters can be translated back to dot RULE_CRITERIA_UNESCAPED = ['.'] diff --git a/st2common/st2common/util/secrets.py b/st2common/st2common/util/secrets.py index 2945ef0594..c0601933c8 100644 --- a/st2common/st2common/util/secrets.py +++ b/st2common/st2common/util/secrets.py @@ -21,7 +21,7 @@ import six -from st2common.util.ujson import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy from st2common.constants.secrets import MASKED_ATTRIBUTE_VALUE diff --git a/st2common/tests/unit/test_misc_utils.py b/st2common/tests/unit/test_misc_utils.py index d7008e921c..9c2def52f1 100644 --- a/st2common/tests/unit/test_misc_utils.py +++ b/st2common/tests/unit/test_misc_utils.py @@ -22,7 +22,7 @@ from st2common.util.misc import strip_shell_chars from st2common.util.misc import lowercase_value from st2common.util.misc import sanitize_output -from st2common.util.ujson import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy __all__ = [ 'MiscUtilTestCase' From d1b370d5efa12f2c8af16e032687d671bcecb510 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:36:46 +0100 Subject: [PATCH 12/39] Hook it up to CI. --- .github/workflows/ci.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 1fa62cde06..936ed05fef 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -40,6 +40,9 @@ jobs: - name: 'Unit Tests' task: 'ci-unit' python-version: '3.6' + - name: 'Micro Benchmarks' + task: 'micro-benchmarks' + python-version: '3.6' # Integration tests are not working yet, still done in Travis # - name: 'Integration Tests' # task: 'ci-integration' From 7a2a1fbf307b288c53460689b402aeb9c130fd4b Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:39:10 +0100 Subject: [PATCH 13/39] Fix lint. --- .../orquesta_runner/orquesta_runner/orquesta_runner.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py b/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py index b59642609e..5edd857856 100644 --- a/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py +++ b/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py @@ -35,7 +35,7 @@ from st2common.services import action as ac_svc from st2common.services import workflows as wf_svc from st2common.util import api as api_util -from st2common.util import ujson +from st2common.util import deep_copy __all__ = [ 'OrquestaRunner', @@ -62,7 +62,7 @@ def _get_notify_config(self): ) def _construct_context(self, wf_ex): - ctx = ujson.fast_deepcopy(self.context) + ctx = deep_copy.fast_deepcopy(self.context) ctx['workflow_execution'] = str(wf_ex.id) return ctx From 6847fb94e098e836988f831d9c95b32500d8abe7 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 19:49:34 +0100 Subject: [PATCH 14/39] Update more affected code, transparently handle ObjectIds. --- st2common/st2common/util/deep_copy.py | 3 ++- st2common/st2common/util/jsonify.py | 5 +++++ st2common/tests/unit/test_action_db_utils.py | 4 ++-- st2common/tests/unit/test_jsonify.py | 3 +++ 4 files changed, 12 insertions(+), 3 deletions(-) diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index b16a2d3c90..03fa449a8b 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -37,8 +37,9 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): try: # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it # to a RFC 3339 string by default + # TODO: Should we also handle ObjectID here transparently? value = orjson.loads(orjson.dumps(value)) - except (OverflowError, ValueError) as e: + except (OverflowError, ValueError, TypeError) as e: # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use # in our tests so we fall back to deep copy if not fall_back_to_deepcopy: diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index bbed6fb266..89bf791de2 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -23,6 +23,7 @@ from json import JSONEncoder import six +import bson import orjson from oslo_config import cfg @@ -42,6 +43,8 @@ class GenericJSON(JSONEncoder): def default(self, obj): # pylint: disable=method-hidden if hasattr(obj, '__json__') and six.callable(obj.__json__): return obj.__json__() + elif isinstance(obj, bson.ObjectId): + return str(obj) else: return JSONEncoder.default(self, obj) @@ -53,6 +56,8 @@ def default(obj): # TODO: We should update the code which passes bytes to pass unicode to avoid this # conversion here return obj.decode("utf-8") + elif isinstance(obj, bson.ObjectId): + return str(obj) raise TypeError diff --git a/st2common/tests/unit/test_action_db_utils.py b/st2common/tests/unit/test_action_db_utils.py index ba2dcef018..60fbd52cfe 100644 --- a/st2common/tests/unit/test_action_db_utils.py +++ b/st2common/tests/unit/test_action_db_utils.py @@ -352,7 +352,7 @@ def test_get_args(self): '1', 'foo,bar,baz,qux', 'foo,bar,baz', - '{"a": 1, "b": "2"}', + '{"a":1,"b":"2"}', '' ] pos_args, _ = action_db_utils.get_args(params, ActionDBUtilsTestCase.action_db) @@ -375,7 +375,7 @@ def test_get_args(self): '0', '', '', - '{"a": 1, "b": "2"}', + '{"a":1,"b":"2"}', '' ] pos_args, _ = action_db_utils.get_args(params, ActionDBUtilsTestCase.action_db) diff --git a/st2common/tests/unit/test_jsonify.py b/st2common/tests/unit/test_jsonify.py index e2165b2e7e..e4d2a3eba9 100644 --- a/st2common/tests/unit/test_jsonify.py +++ b/st2common/tests/unit/test_jsonify.py @@ -19,6 +19,7 @@ import unittest2 from oslo_config import cfg +from bson import ObjectId import st2tests.config as tests_config tests_config.parse_args() @@ -73,6 +74,7 @@ def __json__(self): {"a": "b", "d": [1, 2, 3], "e": 5}, ObjectWithJsonMethod(), b"bytes", + ObjectId('5609e91832ed356d04a93cc0') ] expected_data = [ "1", @@ -84,6 +86,7 @@ def __json__(self): {"a": "b", "d": [1, 2, 3], "e": 5}, {"mah": "json", "1": 2}, "bytes", + '5609e91832ed356d04a93cc0' ] json_libraries = ["json", "orjson"] From cf319d2c85eb4d9798e4b25959eff36fafbb5350 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:02:48 +0100 Subject: [PATCH 15/39] Also handle ObjectId instances transparently. --- st2common/st2common/util/deep_copy.py | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index 03fa449a8b..5cae2a5c4b 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -24,6 +24,13 @@ ] +def default(obj): + # NOTE: For some reason isinstance check doesn't work here so we use class name check + if obj.__class__.__name__ == "ObjectId": + return str(obj) + raise TypeError + + def fast_deepcopy(value, fall_back_to_deepcopy=True): """ Perform a fast deepcopy of the provided value. @@ -38,8 +45,8 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it # to a RFC 3339 string by default # TODO: Should we also handle ObjectID here transparently? - value = orjson.loads(orjson.dumps(value)) - except (OverflowError, ValueError, TypeError) as e: + value = orjson.loads(orjson.dumps(value, default=default)) + except (OverflowError, ValueError) as e: # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use # in our tests so we fall back to deep copy if not fall_back_to_deepcopy: From 0277f9b0a224443c6cb3d014de00758e18678d57 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:10:54 +0100 Subject: [PATCH 16/39] Update affected code. --- st2common/st2common/models/db/trigger.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/st2common/st2common/models/db/trigger.py b/st2common/st2common/models/db/trigger.py index 82a3e6f7da..552d6a8b24 100644 --- a/st2common/st2common/models/db/trigger.py +++ b/st2common/st2common/models/db/trigger.py @@ -15,6 +15,7 @@ from __future__ import absolute_import +import json import hashlib import mongoengine as me @@ -22,7 +23,6 @@ from st2common.models.db import MongoDBAccess from st2common.models.db import stormbase from st2common.constants.types import ResourceType -from st2common.util.jsonify import json_encode __all__ = [ 'TriggerTypeDB', @@ -108,7 +108,9 @@ def get_uid(self): # Note: We sort the resulting JSON object so that the same dictionary always results # in the same hash parameters = getattr(self, 'parameters', {}) - parameters = json_encode(parameters, sort_keys=True) + # NOTE: We intentionally use json.dumps instead of json_encode here for backward + # compatibility reasons. + parameters = json.dumps(parameters, sort_keys=True) parameters = hashlib.md5(parameters.encode()).hexdigest() uid = uid + self.UID_SEPARATOR + parameters From f3daf732d8e99cbeeccd58887fbc6e3902a9e790 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:25:01 +0100 Subject: [PATCH 17/39] Generate requirements files. --- fixed-requirements.txt | 1 + requirements.txt | 1 + st2common/in-requirements.txt | 1 + st2common/requirements.txt | 2 +- 4 files changed, 4 insertions(+), 1 deletion(-) diff --git a/fixed-requirements.txt b/fixed-requirements.txt index a98a90dc34..5fa793d2bf 100644 --- a/fixed-requirements.txt +++ b/fixed-requirements.txt @@ -62,4 +62,5 @@ python-dateutil==2.8.0 python-statsd==2.1.0 prometheus_client==0.1.1 ujson==1.35 +orjson==3.4.8 zipp>=0.5,<=1.0.0 diff --git a/requirements.txt b/requirements.txt index 2b5aa2436c..7c3d1dc182 100644 --- a/requirements.txt +++ b/requirements.txt @@ -36,6 +36,7 @@ networkx==1.11 nose nose-parallel==0.3.1 nose-timer==0.7.5 +orjson==3.4.8 oslo.config<1.13,>=1.12.1 oslo.utils<5.0,>=4.0.0 paramiko==2.7.1 diff --git a/st2common/in-requirements.txt b/st2common/in-requirements.txt index 4f465f74fd..57e4b29256 100644 --- a/st2common/in-requirements.txt +++ b/st2common/in-requirements.txt @@ -32,6 +32,7 @@ webob jsonpath-rw python-statsd ujson +orjson # Note: amqp is used by kombu, this needs to be added here to be picked up by # requirements fixate script. amqp diff --git a/st2common/requirements.txt b/st2common/requirements.txt index 6b7e6e8c70..73766a95c9 100644 --- a/st2common/requirements.txt +++ b/st2common/requirements.txt @@ -24,6 +24,7 @@ kombu==4.6.6 lockfile==0.12.2 mongoengine==0.18.2 networkx==1.11 +orjson==3.4.8 oslo.config<1.13,>=1.12.1 paramiko==2.7.1 pymongo==3.10.0 @@ -37,6 +38,5 @@ semver==2.9.0 six==1.13.0 tooz==2.8.0 ujson==1.35 -orjson==3.4.8 webob==1.8.5 zake==0.2.2 From aa937a177010d002dae296ec1830cc939edca5da Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:25:51 +0100 Subject: [PATCH 18/39] Update comment. --- st2common/st2common/util/deep_copy.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index 5cae2a5c4b..f802007ce4 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -39,12 +39,11 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): exception. :type fall_back_to_deepcopy: ``bool`` """ - # NOTE: ujson round-trip is up to 10 times faster on smaller and larger dicts compared - # to copy.deepcopy(), but it has some edge cases with non-simple types such as datetimes - + # NOTE: ujson / ujson round-trip is up to 10 times faster on smaller and larger dicts compared + # to copy.deepcopy(), but it has some edge cases with non-simple types such as datetimes try: # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it # to a RFC 3339 string by default - # TODO: Should we also handle ObjectID here transparently? value = orjson.loads(orjson.dumps(value, default=default)) except (OverflowError, ValueError) as e: # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use From dd2617929d30e498866eaea016a14f1257d54236 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:33:32 +0100 Subject: [PATCH 19/39] Fix lint. --- conf/st2.conf.sample | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conf/st2.conf.sample b/conf/st2.conf.sample index 758b743e75..037ee92481 100644 --- a/conf/st2.conf.sample +++ b/conf/st2.conf.sample @@ -301,6 +301,8 @@ protocol = udp base_path = /opt/stackstorm # Enable debug mode. debug = False +# Which JSON library to use for serializing / de-serializing data (orjson, json). +json_library = orjson # True to validate action and runner output against schema. validate_output_schema = False # True to validate parameters for non-system trigger types when creatinga rule. By default, only parameters for system triggers are validated. From b68ae130aa8156c0b9ebd269b08ec024d75237e7 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:48:54 +0100 Subject: [PATCH 20/39] Update affected tests. --- .../local_runner/tests/integration/test_localrunner.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/contrib/runners/local_runner/tests/integration/test_localrunner.py b/contrib/runners/local_runner/tests/integration/test_localrunner.py index 0e5a2f3efc..aa2f7b06e2 100644 --- a/contrib/runners/local_runner/tests/integration/test_localrunner.py +++ b/contrib/runners/local_runner/tests/integration/test_localrunner.py @@ -439,7 +439,7 @@ def test_script_with_parameters_parameter_serialization(self): self.assertIn('PARAM_FLOAT=2.55', result['stdout']) self.assertIn('PARAM_BOOLEAN=1', result['stdout']) self.assertIn('PARAM_LIST=a,b,c', result['stdout']) - self.assertIn('PARAM_OBJECT={"foo": "bar"}', result['stdout']) + self.assertIn('PARAM_OBJECT={"foo":"bar"}', result['stdout']) action_parameters = { 'param_string': 'test string', @@ -487,7 +487,7 @@ def test_script_with_parameters_parameter_serialization(self): 'param_float': 2.55, 'param_boolean': True, 'param_list': ['a', 'b', 'c'], - 'param_object': {'foo': 'bar'} + 'param_object': {'foo':'bar'} } runner = self._get_runner(action_db=action_db, entry_point=entry_point) @@ -501,12 +501,12 @@ def test_script_with_parameters_parameter_serialization(self): self.assertIn('PARAM_FLOAT=2.55', result['stdout']) self.assertIn('PARAM_BOOLEAN=1', result['stdout']) self.assertIn('PARAM_LIST=a,b,c', result['stdout']) - self.assertIn('PARAM_OBJECT={"foo": "bar"}', result['stdout']) + self.assertIn('PARAM_OBJECT={"foo":"bar"}', result['stdout']) output_dbs = ActionExecutionOutput.query(output_type='stdout') self.assertEqual(len(output_dbs), 6) self.assertEqual(output_dbs[0].data, 'PARAM_STRING=test string\n') - self.assertEqual(output_dbs[5].data, 'PARAM_OBJECT={"foo": "bar"}\n') + self.assertEqual(output_dbs[5].data, 'PARAM_OBJECT={"foo":"bar"}\n') output_dbs = ActionExecutionOutput.query(output_type='stderr') self.assertEqual(len(output_dbs), 0) From 69fa45f43a0d777d77166148407ca0b59a176f12 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 20:58:05 +0100 Subject: [PATCH 21/39] Fix lint. --- .../runners/local_runner/tests/integration/test_localrunner.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/contrib/runners/local_runner/tests/integration/test_localrunner.py b/contrib/runners/local_runner/tests/integration/test_localrunner.py index aa2f7b06e2..72ee0b2cc7 100644 --- a/contrib/runners/local_runner/tests/integration/test_localrunner.py +++ b/contrib/runners/local_runner/tests/integration/test_localrunner.py @@ -487,7 +487,7 @@ def test_script_with_parameters_parameter_serialization(self): 'param_float': 2.55, 'param_boolean': True, 'param_list': ['a', 'b', 'c'], - 'param_object': {'foo':'bar'} + 'param_object': {'foo': 'bar'} } runner = self._get_runner(action_db=action_db, entry_point=entry_point) From 6c2756f7245a6df731471f0301393a8d918a03e8 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 22:36:33 +0100 Subject: [PATCH 22/39] Add changelog entry. --- CHANGELOG.rst | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index d0460f4ea2..b5910d7eb4 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -27,7 +27,7 @@ Changed * Improve the st2-self-check script to echo to stderr and exit if it isn't run with a ST2_AUTH_TOKEN or ST2_API_KEY environment variable. (improvement) #5068 -* Added timeout parameter for packs.install action to help with long running installs that exceed the +* Added timeout parameter for packs.install action to help with long running installs that exceed the default timeout of 600 sec which is defined by the python_script action runner (improvement) #5084 Contributed by @hnanchahal @@ -40,6 +40,18 @@ Changed * Updated cryptography dependency to version 3.3.2 to avoid CVE-2020-36242 (security) #5151 +* Update most of the code in the StackStorm API and services layer to utilize ``orjson`` library + for serializing and de-serializing json. + + That should result in better json serialization and deserialization performance. + + The change should be fully backward compatible, only difference is that API JSON responses now + won't be indented using 4 spaces by default (indenting adds unnecessary overhead and if needed, + the response can be pretty formatted on the client side using ``jq`` or similar). (improvement) + #5153 + + Contributed by @Kami + Fixed ~~~~~ From 90c088a8d14b2fc6221ba7105333ccca357d82aa Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 14 Feb 2021 23:18:23 +0100 Subject: [PATCH 23/39] Also add micro benchmarks for json serialization an deserialization. --- Makefile | 2 + ..._json_serialization_and_deserialization.py | 143 ++++++++++++++++++ 2 files changed, 145 insertions(+) create mode 100644 st2common/benchmarks/micro/test_json_serialization_and_deserialization.py diff --git a/Makefile b/Makefile index aa27d2b62a..9757e6082a 100644 --- a/Makefile +++ b/Makefile @@ -459,6 +459,8 @@ micro-benchmarks: requirements .micro-benchmarks @echo . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:dict_keys_count_and_depth -s -v st2common/benchmarks/micro/test_fast_deepcopy.py -k "test_fast_deepcopy_with_dict_values" . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:fixture_file -s -v st2common/benchmarks/micro/test_fast_deepcopy.py -k "test_fast_deepcopy_with_json_fixture_file" + . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:fixture_file,param:indent_sort_keys_tuple -s -v st2common/benchmarks/micro/test_json_serialization_and_deserialization.py -k "test_json_dumps" + . $(VIRTUALENV_DIR)/bin/activate; pytest --benchmark-only --benchmark-name=short --benchmark-columns=min,max,mean,stddev,median,ops,rounds --benchmark-group-by=group,param:fixture_file -s -v st2common/benchmarks/micro/test_json_serialization_and_deserialization.py -k "test_json_loads" .PHONY: .cleanmongodb .cleanmongodb: diff --git a/st2common/benchmarks/micro/test_json_serialization_and_deserialization.py b/st2common/benchmarks/micro/test_json_serialization_and_deserialization.py new file mode 100644 index 0000000000..dab63b26fd --- /dev/null +++ b/st2common/benchmarks/micro/test_json_serialization_and_deserialization.py @@ -0,0 +1,143 @@ +# Copyright 2020 The StackStorm Authors. +# Copyright 2019 Extreme Networks, Inc. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import os +import json +import simplejson + +import pytest +import ujson +import orjson + +from st2common.util.jsonify import json_encode_orjson + +BASE_DIR = os.path.dirname(os.path.abspath(__file__)) +FIXTURES_DIR = os.path.abspath(os.path.join(BASE_DIR, "../fixtures/json")) + + +@pytest.mark.parametrize( + "implementation", + [ + "json", + "simplejson", + "ujson", + "orjson" + ], + ids=[ + "json", + "simplejson", + "ujson", + "orjson", + ], +) +@pytest.mark.parametrize( + "indent_sort_keys_tuple", + [ + (0, False), + (0, True), + (2, False), + (2, True) + ], + ids=[ + "indent_none_sort_keys_false", + "indent_none_sort_keys_true", + "indent_2_sort_keys_false", + "indent_2_sort_keys_true", + ], +) +@pytest.mark.parametrize( + "fixture_file", + [ + "rows.json", + ], + ids=[ + "rows.json", + ], +) +@pytest.mark.benchmark(group="json_dumps") +def test_json_dumps(benchmark, fixture_file, indent_sort_keys_tuple, implementation): + indent, sort_keys = indent_sort_keys_tuple + + if not indent: + separators = (',', ':') + else: + separators = None + + with open(os.path.join(FIXTURES_DIR, fixture_file), "r") as fp: + content = fp.read() + + data = json.loads(content) + + def run_benchmark(): + if implementation == "json": + return json.dumps(data, indent=indent, separators=separators, sort_keys=sort_keys) + elif implementation == "simplejson": + return simplejson.dumps(data, indent=indent, separators=separators, sort_keys=sort_keys) + elif implementation == "ujson": + return ujson.dumps(data, indent=indent, sort_keys=sort_keys) + elif implementation == "orjson": + return json_encode_orjson(data, indent=indent, sort_keys=sort_keys) + else: + raise ValueError("Invalid implementation: %s" % (implementation)) + + result = benchmark.pedantic(run_benchmark, iterations=5, rounds=5) + assert len(result) >= 40000 + + +@pytest.mark.parametrize( + "implementation", + [ + "json", + "simplejson", + "ujson", + "orjson" + ], + ids=[ + "json", + "simplejson", + "ujson", + "orjson", + ], +) +@pytest.mark.parametrize( + "fixture_file", + [ + "rows.json", + ], + ids=[ + "rows.json", + ], +) +@pytest.mark.benchmark(group="json_dumps") +def test_json_loads(benchmark, fixture_file, implementation): + with open(os.path.join(FIXTURES_DIR, fixture_file), "r") as fp: + content = fp.read() + + content_loaded = json.loads(content) + + def run_benchmark(): + if implementation == "json": + return json.loads(content) + elif implementation == "simplejson": + return simplejson.loads(content) + elif implementation == "ujson": + return ujson.loads(content) + elif implementation == "orjson": + return orjson.loads(content) + else: + raise ValueError("Invalid implementation: %s" % (implementation)) + + result = benchmark.pedantic(run_benchmark, iterations=10, rounds=10) + assert result == content_loaded From 9bb97394fbd6891ddcfc6b94e0efc337ebd0921a Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 20 Feb 2021 21:43:31 +0100 Subject: [PATCH 24/39] Update more code to use more efficient json encode / decode library. --- .../python_runner/python_action_wrapper.py | 21 ++++++++++++------- .../python_runner/python_runner.py | 13 ++++++------ st2api/st2api/controllers/v1/inquiries.py | 4 ++-- 3 files changed, 22 insertions(+), 16 deletions(-) diff --git a/contrib/runners/python_runner/python_runner/python_action_wrapper.py b/contrib/runners/python_runner/python_runner/python_action_wrapper.py index 119f6bdf84..9b99bbae01 100644 --- a/contrib/runners/python_runner/python_runner/python_action_wrapper.py +++ b/contrib/runners/python_runner/python_runner/python_action_wrapper.py @@ -27,6 +27,12 @@ import distutils.sysconfig +# NOTE: We intentionally use orjson directly here instead of json_encode - orjson.dumps relies +# on config option which we don't parse for the action wrapper since it speeds things down - action +# wrapper should rely on as little imports as possible to make Python runner executions fast - +# that's very important. +import orjson + # Note: This work-around is required to fix the issue with other Python modules which live # inside this directory polluting and masking sys.path for Python runner actions. # Since this module is ran as a Python script inside a subprocess, directory where the script @@ -45,7 +51,6 @@ sys.path.insert(0, distutils.sysconfig.get_python_lib()) import sys -import json import argparse import six @@ -218,12 +223,12 @@ def run(self): # Special case if result object is not JSON serializable - aka user wanted to return a # non-simple type (e.g. class instance or other non-JSON serializable type) try: - json.dumps(action_output['result']) - except TypeError: + orjson.dumps(action_output['result']).decode("utf-8") + except (TypeError, orjson.JSONDecodeError): action_output['result'] = str(action_output['result']) try: - print_output = json.dumps(action_output) + print_output = orjson.dumps(action_output).decode("utf-8") except Exception: print_output = str(action_output) @@ -283,9 +288,9 @@ def _get_action_instance(self): help='Log level for actions') args = parser.parse_args() - config = json.loads(args.config) if args.config else {} + config = orjson.loads(args.config) if args.config else {} user = args.user - parent_args = json.loads(args.parent_args) if args.parent_args else [] + parent_args = orjson.loads(args.parent_args) if args.parent_args else [] log_level = args.log_level if not isinstance(config, dict): @@ -296,7 +301,7 @@ def _get_action_instance(self): if args.parameters: LOG.debug('Getting parameters from argument') args_parameters = args.parameters - args_parameters = json.loads(args_parameters) if args_parameters else {} + args_parameters = orjson.loads(args_parameters) if args_parameters else {} parameters.update(args_parameters) if args.stdin_parameters: @@ -311,7 +316,7 @@ def _get_action_instance(self): stdin_data = sys.stdin.readline().strip() try: - stdin_parameters = json.loads(stdin_data) + stdin_parameters = orjson.loads(stdin_data) stdin_parameters = stdin_parameters.get('parameters', {}) except Exception as e: msg = ('Failed to parse parameters from stdin. Expected a JSON object with ' diff --git a/contrib/runners/python_runner/python_runner/python_runner.py b/contrib/runners/python_runner/python_runner/python_runner.py index fd412c890e..e6ae248b75 100644 --- a/contrib/runners/python_runner/python_runner/python_runner.py +++ b/contrib/runners/python_runner/python_runner/python_runner.py @@ -18,7 +18,6 @@ import os import re import sys -import json import uuid import functools from subprocess import list2cmdline @@ -54,6 +53,8 @@ from st2common.util.shell import quote_unix from st2common.services.action import store_execution_output_data from st2common.runners.utils import make_read_and_store_stream_func +from st2common.util.jsonify import json_decode +from st2common.util.jsonify import json_encode from python_runner import python_action_wrapper @@ -129,7 +130,7 @@ def run(self, action_parameters): LOG.debug('Getting user.') user = self.get_user() LOG.debug('Serializing parameters.') - serialized_parameters = json.dumps(action_parameters if action_parameters else {}) + serialized_parameters = json_encode(action_parameters if action_parameters else {}) LOG.debug('Getting virtualenv_path.') virtualenv_path = get_sandbox_virtualenv_path(pack=pack) LOG.debug('Getting python path.') @@ -155,9 +156,9 @@ def run(self, action_parameters): LOG.debug('Setting args.') if self._use_parent_args: - parent_args = json.dumps(sys.argv[1:]) + parent_args = json_encode(sys.argv[1:]) else: - parent_args = json.dumps([]) + parent_args = json_encode([]) args = [ python_path, @@ -186,7 +187,7 @@ def run(self, action_parameters): args.append('--parameters=%s' % (serialized_parameters)) if self._config: - args.append('--config=%s' % (json.dumps(self._config))) + args.append('--config=%s' % (json_encode(self._config))) if self._log_level != PYTHON_RUNNER_DEFAULT_LOG_LEVEL: # We only pass --log-level parameter if non default log level value is specified @@ -332,7 +333,7 @@ def _get_output_values(self, exit_code, stdout, stderr, timed_out): # Parse the serialized action result object (if available) if action_result: try: - action_result = json.loads(action_result) + action_result = json_decode(action_result) except Exception as e: # Failed to de-serialize the result, probably it contains non-simple type or similar LOG.warning('Failed to de-serialize result "%s": %s' % (str(action_result), diff --git a/st2api/st2api/controllers/v1/inquiries.py b/st2api/st2api/controllers/v1/inquiries.py index a892076917..a7beb447ca 100644 --- a/st2api/st2api/controllers/v1/inquiries.py +++ b/st2api/st2api/controllers/v1/inquiries.py @@ -14,7 +14,6 @@ # limitations under the License. import copy -import json import six from oslo_config import cfg @@ -32,6 +31,7 @@ from st2common.rbac.backends import get_rbac_backend from st2common import router as api_router from st2common.services import inquiry as inquiry_service +from st2common.util.jsonify import json_decode __all__ = [ @@ -85,7 +85,7 @@ def get_all(self, exclude_attributes=None, include_attributes=None, requester_us # a list of dicts, and then individually convert these to InquiryResponseAPI instances inquiries = [ inqy_api_models.InquiryResponseAPI.from_model(raw_inquiry, skip_db=True) - for raw_inquiry in json.loads(raw_inquiries.body) + for raw_inquiry in json_decode(raw_inquiries.body) ] # Repackage into Response with correct headers From b6a965f4eae8a1b3eee1fcc0f0f76beb5dba524a Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 10:55:21 +0100 Subject: [PATCH 25/39] Use latest version of orjson. --- fixed-requirements.txt | 2 +- requirements.txt | 2 +- st2common/requirements.txt | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/fixed-requirements.txt b/fixed-requirements.txt index 5fa793d2bf..41c56be354 100644 --- a/fixed-requirements.txt +++ b/fixed-requirements.txt @@ -62,5 +62,5 @@ python-dateutil==2.8.0 python-statsd==2.1.0 prometheus_client==0.1.1 ujson==1.35 -orjson==3.4.8 +orjson==3.5.0 zipp>=0.5,<=1.0.0 diff --git a/requirements.txt b/requirements.txt index 7c3d1dc182..b4f8f26b61 100644 --- a/requirements.txt +++ b/requirements.txt @@ -36,7 +36,7 @@ networkx==1.11 nose nose-parallel==0.3.1 nose-timer==0.7.5 -orjson==3.4.8 +orjson==3.5.0 oslo.config<1.13,>=1.12.1 oslo.utils<5.0,>=4.0.0 paramiko==2.7.1 diff --git a/st2common/requirements.txt b/st2common/requirements.txt index 73766a95c9..eaaf2c6d4a 100644 --- a/st2common/requirements.txt +++ b/st2common/requirements.txt @@ -24,7 +24,7 @@ kombu==4.6.6 lockfile==0.12.2 mongoengine==0.18.2 networkx==1.11 -orjson==3.4.8 +orjson==3.5.0 oslo.config<1.13,>=1.12.1 paramiko==2.7.1 pymongo==3.10.0 From 5f75210b4df57f266b5b9e62a3846d73b9d16142 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 11:01:48 +0100 Subject: [PATCH 26/39] Update help string. --- conf/st2.conf.sample | 2 +- st2common/st2common/config.py | 6 ++++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/conf/st2.conf.sample b/conf/st2.conf.sample index 037ee92481..bc33f124cb 100644 --- a/conf/st2.conf.sample +++ b/conf/st2.conf.sample @@ -301,7 +301,7 @@ protocol = udp base_path = /opt/stackstorm # Enable debug mode. debug = False -# Which JSON library to use for serializing / de-serializing data (orjson, json). +# Which JSON library to use for serializing / de-serializing data (orjson, json). This feature flag is here primarily for testing and benchmarking reasons and should not be changed by the end user since orjson offers large performance improvements. json_library = orjson # True to validate action and runner output against schema. validate_output_schema = False diff --git a/st2common/st2common/config.py b/st2common/st2common/config.py index b1a3a54845..f7fbc17183 100644 --- a/st2common/st2common/config.py +++ b/st2common/st2common/config.py @@ -119,8 +119,10 @@ def register_opts(ignore_errors=False): help='True to validate action and runner output against schema.'), cfg.StrOpt( 'json_library', default='orjson', choices='orjson, json', - help='Which JSON library to use for serializing / de-serializing data (orjson, json).'), - + help='Which JSON library to use for serializing / de-serializing data (orjson, json). ' + 'This feature flag is here primarily for testing and benchmarking reasons and ' + 'should not be changed by the end user since orjson offers large performance ' + 'improvements.'), ] do_register_opts(system_opts, 'system', ignore_errors) From 8a6d8ae52064bb8b5f227c2a2d5567699f08f7ca Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 11:07:00 +0100 Subject: [PATCH 27/39] Don't publicly document the config option which is really just used as a feature flag for benchmarking and compatibility tests reasons and should not be changed by the end user. --- conf/st2.conf.sample | 2 -- tools/config_gen.py | 4 ++++ 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/conf/st2.conf.sample b/conf/st2.conf.sample index bc33f124cb..758b743e75 100644 --- a/conf/st2.conf.sample +++ b/conf/st2.conf.sample @@ -301,8 +301,6 @@ protocol = udp base_path = /opt/stackstorm # Enable debug mode. debug = False -# Which JSON library to use for serializing / de-serializing data (orjson, json). This feature flag is here primarily for testing and benchmarking reasons and should not be changed by the end user since orjson offers large performance improvements. -json_library = orjson # True to validate action and runner output against schema. validate_output_schema = False # True to validate parameters for non-system trigger types when creatinga rule. By default, only parameters for system triggers are validated. diff --git a/tools/config_gen.py b/tools/config_gen.py index e705161ea3..53f6545e62 100755 --- a/tools/config_gen.py +++ b/tools/config_gen.py @@ -39,6 +39,7 @@ 'st2reactor.garbage_collector.config'] SKIP_GROUPS = ['api_pecan', 'rbac', 'results_tracker'] +SKIP_OPTIONS = ['json_library'] # We group auth options together to make it a bit more clear what applies where AUTH_OPTIONS = { @@ -144,6 +145,9 @@ def _read_groups(opt_groups): def _print_options(opt_group, options): for opt in sorted(options, key=lambda x: x['opt'].name): + if opt['opt'].name in SKIP_OPTIONS: + continue + opt = opt['opt'] # Special case for options which could change during this script run From d0b99529662ee48ad84afd9bd3140eb06bb52a62 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 19:14:22 +0100 Subject: [PATCH 28/39] Add back file which was accidentaly removed. --- .pre-commit-config.yaml | 42 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 .pre-commit-config.yaml diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000000..c539e0b854 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,42 @@ +# pre-commit hook which runs all the various lint checks + black auto formatting on the added +# files. +# This hook relies on development virtual environment being present in virtualenv/. +default_language_version: + python: python3.6 + +exclude: '(build|dist)' +repos: + - repo: local + hooks: + - id: black + name: black + entry: ./virtualenv/bin/python -m black --config pyproject.toml + language: script + types: [file, python] + - repo: local + hooks: + - id: flake8 + name: flake8 + entry: ./virtualenv/bin/python -m flake8 --config lint-configs/python/.flake8 + language: script + types: [file, python] + - repo: local + hooks: + - id: pylint + name: pylint + entry: ./virtualenv/bin/python -m pylint -E --rcfile=./lint-configs/python/.pylintrc + language: script + types: [file, python] + - repo: local + hooks: + - id: bandit + name: bandit + entry: ./virtualenv/bin/python -m bandit -lll -x build,dist + language: script + types: [file, python] + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v2.5.0 + hooks: + - id: trailing-whitespace + exclude: (^conf/|^st2common/st2common/openapi.yaml|^st2client/tests/fixtures|^st2tests/st2tests/fixtures) + - id: check-yaml From 59f2c49e17eb08a3c31e33df96c36e7de592c47f Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 20:08:09 +0100 Subject: [PATCH 29/39] Add a workaround for tests. --- st2common/st2common/util/jsonify.py | 35 ++++++++++++++++++++--------- 1 file changed, 25 insertions(+), 10 deletions(-) diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index 2b220a7a66..df57df2c1b 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -93,6 +93,21 @@ def json_decode_orjson(data): return orjson.loads(data) +def get_json_library_config_option() -> str: + """ + Return value of system.json_library config option. + + This method also takes care of returning a correct default value in case config is not parsed + yet (this can happen in some test cases, etc.). + """ + try: + value = cfg.CONF.system.json_library + except Exception: + value = "orjson" + + return value + + def json_encode(obj, indent=None, sort_keys=False): """ Wrapper function for encoding the provided object. @@ -101,14 +116,14 @@ def json_encode(obj, indent=None, sort_keys=False): This function should be used everywhere in the code base where json.dumps() behavior is desired. """ - if cfg.CONF.system.json_library == "json": + json_library = get_json_library_config_option() + + if json_library == "json": return json_encode_native_json(obj=obj, indent=indent, sort_keys=sort_keys) - elif cfg.CONF.system.json_library == "orjson": + elif json_library == "orjson": return json_encode_orjson(obj=obj, indent=indent, sort_keys=sort_keys) else: - raise ValueError( - "Unsupported json_library: %s" % (cfg.CONF.system.json_library) - ) + raise ValueError("Unsupported json_library: %s" % (json_library)) def json_decode(data): @@ -119,14 +134,14 @@ def json_decode(data): This function should be used everywhere in the code base where json.loads() behavior is desired. """ - if cfg.CONF.system.json_library == "json": + json_library = get_json_library_config_option() + + if json_library == "json": return json_decode_native_json(data=data) - elif cfg.CONF.system.json_library == "orjson": + elif json_library == "orjson": return json_decode_orjson(data=data) else: - raise ValueError( - "Unsupported json_library: %s" % (cfg.CONF.system.json_library) - ) + raise ValueError("Unsupported json_library: %s" % (json_library)) def load_file(path): From bd202f4e5bc70bce19fecbb428df88f173cdecad Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 20:13:46 +0100 Subject: [PATCH 30/39] Remove config option we don't want to expose to the end users anyway and just rely on module level constant which we can patch during tests to perform compatibility tests. --- st2common/st2common/config.py | 9 --------- st2common/st2common/util/jsonify.py | 25 +++++++------------------ st2common/tests/unit/test_jsonify.py | 5 +---- 3 files changed, 8 insertions(+), 31 deletions(-) diff --git a/st2common/st2common/config.py b/st2common/st2common/config.py index 67e7153e43..e7b30a9a7c 100644 --- a/st2common/st2common/config.py +++ b/st2common/st2common/config.py @@ -118,15 +118,6 @@ def register_opts(ignore_errors=False): default=False, help="True to validate action and runner output against schema.", ), - cfg.StrOpt( - "json_library", - default="orjson", - choices="orjson, json", - help="Which JSON library to use for serializing / de-serializing data (orjson, json). " - "This feature flag is here primarily for testing and benchmarking reasons and " - "should not be changed by the end user since orjson offers large performance " - "improvements.", - ), ] do_register_opts(system_opts, "system", ignore_errors) diff --git a/st2common/st2common/util/jsonify.py b/st2common/st2common/util/jsonify.py index df57df2c1b..894464d389 100644 --- a/st2common/st2common/util/jsonify.py +++ b/st2common/st2common/util/jsonify.py @@ -25,7 +25,6 @@ import six import bson import orjson -from oslo_config import cfg __all__ = [ @@ -36,6 +35,11 @@ "get_json_type_for_python_value", ] +# Which json library to use for data serialization and deserialization. +# We only expose this option so we can exercise code paths with different libraries inside the +# tests for compatibility reasons +DEFAULT_JSON_LIBRARY = "orjson" + class GenericJSON(JSONEncoder): def default(self, obj): # pylint: disable=method-hidden @@ -93,21 +97,6 @@ def json_decode_orjson(data): return orjson.loads(data) -def get_json_library_config_option() -> str: - """ - Return value of system.json_library config option. - - This method also takes care of returning a correct default value in case config is not parsed - yet (this can happen in some test cases, etc.). - """ - try: - value = cfg.CONF.system.json_library - except Exception: - value = "orjson" - - return value - - def json_encode(obj, indent=None, sort_keys=False): """ Wrapper function for encoding the provided object. @@ -116,7 +105,7 @@ def json_encode(obj, indent=None, sort_keys=False): This function should be used everywhere in the code base where json.dumps() behavior is desired. """ - json_library = get_json_library_config_option() + json_library = DEFAULT_JSON_LIBRARY if json_library == "json": return json_encode_native_json(obj=obj, indent=indent, sort_keys=sort_keys) @@ -134,7 +123,7 @@ def json_decode(data): This function should be used everywhere in the code base where json.loads() behavior is desired. """ - json_library = get_json_library_config_option() + json_library = DEFAULT_JSON_LIBRARY if json_library == "json": return json_decode_native_json(data=data) diff --git a/st2common/tests/unit/test_jsonify.py b/st2common/tests/unit/test_jsonify.py index 7f1482c02d..38f633aab6 100644 --- a/st2common/tests/unit/test_jsonify.py +++ b/st2common/tests/unit/test_jsonify.py @@ -18,7 +18,6 @@ import json import unittest2 -from oslo_config import cfg from bson import ObjectId import st2tests.config as tests_config @@ -92,9 +91,7 @@ def __json__(self): json_libraries = ["json", "orjson"] for json_library in json_libraries: - cfg.CONF.set_override( - name="json_library", override=json_library, group="system" - ) + jsonify.DEFAULT_JSON_LIBRARY = json_library result_encoded = jsonify.json_encode(input_data) result_decoded = jsonify.json_decode(result_encoded) From ee0bd1ffea4cdcc992501c059956c6cd2066ea2f Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 20:19:11 +0100 Subject: [PATCH 31/39] Make sure we clear up after each test to avoid cross test pollution. --- st2common/tests/unit/test_jsonify.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/st2common/tests/unit/test_jsonify.py b/st2common/tests/unit/test_jsonify.py index 38f633aab6..fe5de6e5e8 100644 --- a/st2common/tests/unit/test_jsonify.py +++ b/st2common/tests/unit/test_jsonify.py @@ -28,6 +28,14 @@ class JsonifyTests(unittest2.TestCase): + @classmethod + def setUpClass(cls): + jsonify.DEFAULT_JSON_LIBRARY = "orjson" + + @classmethod + def tearDownClass(cls): + jsonify.DEFAULT_JSON_LIBRARY = "orjson" + def test_none_object(self): obj = None self.assertIsNone(jsonify.json_loads(obj)) From e918d23091df422d86d5c562a8ac00b6287678cd Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sat, 6 Mar 2021 20:19:45 +0100 Subject: [PATCH 32/39] Update st2common/benchmarks/micro/test_fast_deepcopy.py Co-authored-by: Jacob Floyd --- st2common/benchmarks/micro/test_fast_deepcopy.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py index e499c32296..8a9b6bf0c6 100644 --- a/st2common/benchmarks/micro/test_fast_deepcopy.py +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -14,7 +14,7 @@ # limitations under the License. """ -Micro benchmark which compares the performance of or fast_deepcopy implementation using different +Micro benchmark which compares the performance of our fast_deepcopy implementation using different underlying implementations (copy.deepcopy, urjson, orjson). """ From a2ef1e66c02a16d0b13657ef7b66566cbfaa9fd3 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 7 Mar 2021 10:47:24 +0100 Subject: [PATCH 33/39] Use sys.stdout.buffer instead of sys.stdout. sys.tdout.buffer works with bytes where as sys.stdout works with unicode. orjson returns bytes and this way we avoid unncessary conversation back and forth between bytes and unicode. In addition to that, using bytes means it will also work correctly if the system locale is not set to utf-8. --- .../python_runner/python_action_wrapper.py | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/contrib/runners/python_runner/python_runner/python_action_wrapper.py b/contrib/runners/python_runner/python_runner/python_action_wrapper.py index 7420396227..66def00fad 100644 --- a/contrib/runners/python_runner/python_runner/python_action_wrapper.py +++ b/contrib/runners/python_runner/python_runner/python_action_wrapper.py @@ -238,19 +238,25 @@ def run(self): # Special case if result object is not JSON serializable - aka user wanted to return a # non-simple type (e.g. class instance or other non-JSON serializable type) try: - orjson.dumps(action_output["result"]).decode("utf-8") + orjson.dumps(action_output["result"]) except (TypeError, orjson.JSONDecodeError): action_output["result"] = str(action_output["result"]) try: - print_output = orjson.dumps(action_output).decode("utf-8") + print_output = orjson.dumps(action_output) except Exception: - print_output = str(action_output) + print_output = str(action_output).encode("utf-8") + + # Data is bytes so we use sys.stdout.buffer which works with bytes and not sys.stdout + # which works with strings / unicodes. + # This way it also works correctly with unicode sequences. + # Technically we could also write to sys.stdout, but this would require additional + # conversion back and forth # Print output to stdout so the parent can capture it - sys.stdout.write(ACTION_OUTPUT_RESULT_DELIMITER) - sys.stdout.write(print_output + "\n") - sys.stdout.write(ACTION_OUTPUT_RESULT_DELIMITER) + sys.stdout.buffer.write(ACTION_OUTPUT_RESULT_DELIMITER.encode("utf-8")) + sys.stdout.buffer.write(print_output + b"\n") + sys.stdout.buffer.write(ACTION_OUTPUT_RESULT_DELIMITER.encode("utf-8")) sys.stdout.flush() def _get_action_instance(self): From f2bd25091a75be2fbe4aaf166cc2b1afc29e08dd Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 7 Mar 2021 11:11:16 +0100 Subject: [PATCH 34/39] Update service setup code so also print used locale and fs encoding. This will make it easier to troubleshoot locale / encoding related issue. Also make sure we print those version related messages under INFO log level instead of DEBUG since they may be material when troubleshooting various issues so we should use INFO. --- st2common/st2common/service_setup.py | 30 +++++++++++++++++++++++++--- 1 file changed, 27 insertions(+), 3 deletions(-) diff --git a/st2common/st2common/service_setup.py b/st2common/st2common/service_setup.py index bd01d205e7..03f9bcdfa7 100644 --- a/st2common/st2common/service_setup.py +++ b/st2common/st2common/service_setup.py @@ -22,6 +22,7 @@ import os import sys import traceback +import locale import logging as stdlib_logging import six @@ -111,17 +112,40 @@ def setup( sys.version_info[1], sys.version_info[2], ) - LOG.debug("Using Python: %s (%s)" % (version, sys.executable)) + + # We print locale related info to make it easier to troubleshoot issues where locale is not + # set correctly (e.g. using C / ascii, but services are trying to work with unicode data + # would result in things blowing up) + + fs_encoding = sys.getfilesystemencoding() + default_encoding = sys.getdefaultencoding() + lang_env = os.environ.get("LANG", "unknown") + + try: + language_code, encoding = locale.getdefaultlocale() + + if language_code and encoding: + used_locale = ".".join([language_code, encoding]) + else: + used_locale = "unable to retrieve locale" + except Exception as e: + used_locale = "unable to retrieve locale: %s " % (str(e)) + + LOG.info("Using Python: %s (%s)" % (version, sys.executable)) + LOG.info( + "Using fs encoding: %s, default encoding: %s, LANG env variable: %s, locale: %s" + % (fs_encoding, default_encoding, lang_env, used_locale) + ) config_file_paths = cfg.CONF.config_file config_file_paths = [os.path.abspath(path) for path in config_file_paths] - LOG.debug("Using config files: %s", ",".join(config_file_paths)) + LOG.info("Using config files: %s", ",".join(config_file_paths)) # Setup logging. logging_config_path = config.get_logging_config_path() logging_config_path = os.path.abspath(logging_config_path) - LOG.debug("Using logging config: %s", logging_config_path) + LOG.info("Using logging config: %s", logging_config_path) is_debug_enabled = cfg.CONF.debug or cfg.CONF.system.debug From 5e089425f141ebf44d62bf62d250629b725c3310 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Sun, 7 Mar 2021 12:02:29 +0100 Subject: [PATCH 35/39] Update affected tests, add test for verifying service startup messages. --- .../test_service_setup_log_level_filtering.py | 31 ++++++++++++++----- 1 file changed, 23 insertions(+), 8 deletions(-) diff --git a/st2common/tests/integration/test_service_setup_log_level_filtering.py b/st2common/tests/integration/test_service_setup_log_level_filtering.py index a03e90688a..67479fc8e3 100644 --- a/st2common/tests/integration/test_service_setup_log_level_filtering.py +++ b/st2common/tests/integration/test_service_setup_log_level_filtering.py @@ -65,6 +65,21 @@ class ServiceSetupLogLevelFilteringTestCase(IntegrationTestCase): def test_audit_log_level_is_filtered_if_log_level_is_not_debug_or_audit(self): + # 0. Verify INFO level service start up messages + process = self._start_process(config_path=ST2_CONFIG_INFO_LL_PATH) + self.add_process(process=process) + + # Give it some time to start up + eventlet.sleep(3) + process.send_signal(signal.SIGKILL) + + # Verify first 4 environment related log messages + stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[:4]) + self.assertIn("INFO [-] Using Python:", stdout) + self.assertIn("INFO [-] Using fs encoding:", stdout) + self.assertIn("INFO [-] Using config files:", stdout) + self.assertIn("INFO [-] Using logging config:", stdout) + # 1. INFO log level - audit messages should not be included process = self._start_process(config_path=ST2_CONFIG_INFO_LL_PATH) self.add_process(process=process) @@ -73,8 +88,8 @@ def test_audit_log_level_is_filtered_if_log_level_is_not_debug_or_audit(self): eventlet.sleep(3) process.send_signal(signal.SIGKILL) - # First 3 log lines are debug messages about the environment which are always logged - stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[3:]) + # First 4 log lines are debug messages about the environment which are always logged + stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[4:]) self.assertIn("INFO [-]", stdout) self.assertNotIn("DEBUG [-]", stdout) @@ -88,8 +103,8 @@ def test_audit_log_level_is_filtered_if_log_level_is_not_debug_or_audit(self): eventlet.sleep(5) process.send_signal(signal.SIGKILL) - # First 3 log lines are debug messages about the environment which are always logged - stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[3:]) + # First 4 log lines are debug messages about the environment which are always logged + stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[4:]) self.assertIn("INFO [-]", stdout) self.assertIn("DEBUG [-]", stdout) @@ -103,8 +118,8 @@ def test_audit_log_level_is_filtered_if_log_level_is_not_debug_or_audit(self): eventlet.sleep(5) process.send_signal(signal.SIGKILL) - # First 3 log lines are debug messages about the environment which are always logged - stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[3:]) + # First 4 log lines are debug messages about the environment which are always logged + stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[4:]) self.assertNotIn("INFO [-]", stdout) self.assertNotIn("DEBUG [-]", stdout) @@ -118,8 +133,8 @@ def test_audit_log_level_is_filtered_if_log_level_is_not_debug_or_audit(self): eventlet.sleep(5) process.send_signal(signal.SIGKILL) - # First 3 log lines are debug messages about the environment which are always logged - stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[3:]) + # First 4 log lines are debug messages about the environment which are always logged + stdout = "\n".join(process.stdout.read().decode("utf-8").split("\n")[4:]) self.assertIn("INFO [-]", stdout) self.assertIn("DEBUG [-]", stdout) From af9228c510f761f93ceda4d8d5ca24b0a9839faf Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Mon, 15 Mar 2021 20:37:54 +0100 Subject: [PATCH 36/39] Default SKIP_OPTIONS to an empty list. --- tools/config_gen.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/config_gen.py b/tools/config_gen.py index fb2d24dd87..48ce5d205a 100755 --- a/tools/config_gen.py +++ b/tools/config_gen.py @@ -41,7 +41,7 @@ ] SKIP_GROUPS = ["api_pecan", "rbac", "results_tracker"] -SKIP_OPTIONS = ["json_library"] +SKIP_OPTIONS = [] # We group auth options together to make it a bit more clear what applies where AUTH_OPTIONS = { From bd4eb012558793cd3d697bf980cbf211119f6222 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Mon, 15 Mar 2021 21:29:09 +0100 Subject: [PATCH 37/39] Update function docstring / comment. --- st2common/st2common/util/deep_copy.py | 25 ++++++++++++++++--------- 1 file changed, 16 insertions(+), 9 deletions(-) diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index f21b4b4f86..2acb4d49da 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -31,21 +31,28 @@ def default(obj): def fast_deepcopy(value, fall_back_to_deepcopy=True): """ - Perform a fast deepcopy of the provided value. + Perform a fast deep copy of the provided value. - :param fall_back_to_deepcopy: True to fall back to copy.deepcopy() in case ujson throws an - exception. + This function is designed primary to operate on values of a simple type (think JSON types - + dicts, lists, arrays, strings, ints). + + It's up to 10x faster compared to copy.deepcopy(). + + In case the provided value contains non-simple types, we simply fall back to "copy.deepcopy()". + This means that we can still use it on values which sometimes, but not always contain complex + types - in that case, when value doesn't contain complex types we will perform much faster copy + and when it does, we will simply fall back to copy.deepcopy(). + + :param fall_back_to_deepcopy: True to fall back to copy.deepcopy() in case we fail to fast deep + copy the value because it contains complex types or similar. :type fall_back_to_deepcopy: ``bool`` """ - # NOTE: ujson / ujson round-trip is up to 10 times faster on smaller and larger dicts compared - # to copy.deepcopy(), but it has some edge cases with non-simple types such as datetimes + # NOTE: ujson / orjson round-trip is up to 10 times faster on smaller and larger dicts compared + # to copy.deepcopy(), but it has some edge cases with non-simple types such as datetimes, class + # instances, etc. try: - # NOTE: ujson serialized datetime to seconds since epoch (int) whereas orjson serializes it - # to a RFC 3339 string by default value = orjson.loads(orjson.dumps(value, default=default)) except (OverflowError, ValueError) as e: - # NOTE: ujson doesn't support 5 or 6 bytes utf-8 sequences which we use - # in our tests so we fall back to deep copy if not fall_back_to_deepcopy: raise e From c80d07a57493c65eb946642c44f4fd29445f074d Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Mon, 15 Mar 2021 21:37:07 +0100 Subject: [PATCH 38/39] Add additional tests for it. --- st2common/st2common/util/deep_copy.py | 4 ++-- st2common/tests/unit/test_misc_utils.py | 23 +++++++++++++++++++++++ 2 files changed, 25 insertions(+), 2 deletions(-) diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index 2acb4d49da..688d23a52d 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -44,7 +44,7 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): and when it does, we will simply fall back to copy.deepcopy(). :param fall_back_to_deepcopy: True to fall back to copy.deepcopy() in case we fail to fast deep - copy the value because it contains complex types or similar. + copy the value because it contains complex types or similar :type fall_back_to_deepcopy: ``bool`` """ # NOTE: ujson / orjson round-trip is up to 10 times faster on smaller and larger dicts compared @@ -52,7 +52,7 @@ def fast_deepcopy(value, fall_back_to_deepcopy=True): # instances, etc. try: value = orjson.loads(orjson.dumps(value, default=default)) - except (OverflowError, ValueError) as e: + except (OverflowError, ValueError, TypeError) as e: if not fall_back_to_deepcopy: raise e diff --git a/st2common/tests/unit/test_misc_utils.py b/st2common/tests/unit/test_misc_utils.py index 4649904c20..7aa93933cc 100644 --- a/st2common/tests/unit/test_misc_utils.py +++ b/st2common/tests/unit/test_misc_utils.py @@ -66,6 +66,14 @@ def test_lowercase_value(self): self.assertEqual(expected_value, lowercase_value(value=value)) def test_fast_deepcopy_success(self): + class Foo(object): + a = 1 + b = 2 + c = 3 + d = [1, 2, 3] + + obj = Foo() + values = [ "a", "٩(̾●̮̮̃̾•̃̾)۶", @@ -86,6 +94,21 @@ def test_fast_deepcopy_success(self): self.assertEqual(result, value) self.assertEqual(result, expected_value) + # Non-simple type, should fall back to copy.deepcopy() + value = {"a": 1, "b": [1, 2, 3], "c": obj} + expected_value = {"a": 1, "b": [1, 2, 3]} + + result = fast_deepcopy(value) + result_c = result.pop("c") + self.assertEqual(result, expected_value) + self.assertEqual(result_c.a, 1) + self.assertEqual(result_c.b, 2) + self.assertEqual(result_c.c, 3) + self.assertEqual(result_c.d, [1, 2, 3]) + + # fall_back_to_deepcopy=False + self.assertRaises(TypeError, fast_deepcopy, value, fall_back_to_deepcopy=False) + def test_sanitize_output_use_pyt_false(self): # pty is not used, \r\n shouldn't be replaced with \n input_strs = [ From 9ba8d45f149da95e059d8ce323ac4c3ba1a889f7 Mon Sep 17 00:00:00 2001 From: Tomaz Muraus Date: Mon, 15 Mar 2021 21:40:26 +0100 Subject: [PATCH 39/39] Rename function to fast_deepcopy_dict() since it's primarily used on dictionari with simple (think JSON) types. --- .../action_chain_runner/action_chain_runner.py | 4 ++-- .../orquesta_runner/orquesta_runner.py | 2 +- st2common/benchmarks/micro/test_fast_deepcopy.py | 14 ++++++++------ .../st2common/models/utils/action_param_utils.py | 8 +++++--- st2common/st2common/util/deep_copy.py | 4 ++-- st2common/st2common/util/mongoescape.py | 6 +++--- st2common/st2common/util/secrets.py | 6 +++--- st2common/tests/unit/test_misc_utils.py | 12 +++++++----- 8 files changed, 31 insertions(+), 25 deletions(-) diff --git a/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py b/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py index 1d98ad9f90..57c015adcf 100644 --- a/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py +++ b/contrib/runners/action_chain_runner/action_chain_runner/action_chain_runner.py @@ -48,7 +48,7 @@ from st2common.util import jinja as jinja_utils from st2common.util import param as param_utils from st2common.util.config_loader import get_config -from st2common.util.deep_copy import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy_dict __all__ = ["ActionChainRunner", "ChainHolder", "get_runner", "get_metadata"] @@ -85,7 +85,7 @@ def init_vars(self, action_parameters, action_context=None): ) def restore_vars(self, ctx_vars): - self.vars.update(fast_deepcopy(ctx_vars)) + self.vars.update(fast_deepcopy_dict(ctx_vars)) def validate(self): """ diff --git a/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py b/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py index bb40f030f1..586a9d0cc9 100644 --- a/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py +++ b/contrib/runners/orquesta_runner/orquesta_runner/orquesta_runner.py @@ -59,7 +59,7 @@ def _get_notify_config(self): ) def _construct_context(self, wf_ex): - ctx = deep_copy.fast_deepcopy(self.context) + ctx = deep_copy.fast_deepcopy_dict(self.context) ctx["workflow_execution"] = str(wf_ex.id) return ctx diff --git a/st2common/benchmarks/micro/test_fast_deepcopy.py b/st2common/benchmarks/micro/test_fast_deepcopy.py index 8a9b6bf0c6..4f1ec00b6f 100644 --- a/st2common/benchmarks/micro/test_fast_deepcopy.py +++ b/st2common/benchmarks/micro/test_fast_deepcopy.py @@ -14,8 +14,8 @@ # limitations under the License. """ -Micro benchmark which compares the performance of our fast_deepcopy implementation using different -underlying implementations (copy.deepcopy, urjson, orjson). +Micro benchmark which compares the performance of our fast_deepcopy_dict implementation using +different underlying implementations (copy.deepcopy, urjson, orjson). """ # TODO: Also se actual orquesta context and execution fixture files which contain real life data @@ -86,8 +86,8 @@ def generate_random_dict(keys_count=10, depth=1): "1000_10_attributes", ], ) -@pytest.mark.benchmark(group="fast_deepcopy") -def test_fast_deepcopy_with_dict_values( +@pytest.mark.benchmark(group="fast_deepcopy_dict") +def test_fast_deepcopy_dict_with_dict_values( benchmark, dict_keys_count_and_depth, implementation ): dict_keys, dict_depth = dict_keys_count_and_depth @@ -127,8 +127,10 @@ def run_benchmark(): "rows.json", ], ) -@pytest.mark.benchmark(group="fast_deepcopy") -def test_fast_deepcopy_with_json_fixture_file(benchmark, fixture_file, implementation): +@pytest.mark.benchmark(group="fast_deepcopy_dict") +def test_fast_deepcopy_dict_with_json_fixture_file( + benchmark, fixture_file, implementation +): with open(os.path.join(FIXTURES_DIR, fixture_file), "r") as fp: content = fp.read() diff --git a/st2common/st2common/models/utils/action_param_utils.py b/st2common/st2common/models/utils/action_param_utils.py index abe7cc9a93..dcf8bdd302 100644 --- a/st2common/st2common/models/utils/action_param_utils.py +++ b/st2common/st2common/models/utils/action_param_utils.py @@ -20,7 +20,7 @@ from st2common import log as logging from st2common.util import action_db as action_db_util from st2common.util.casts import get_cast -from st2common.util.deep_copy import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy_dict LOG = logging.getLogger(__name__) @@ -53,12 +53,14 @@ def _merge_param_meta_values(action_meta=None, runner_meta=None): def get_params_view(action_db=None, runner_db=None, merged_only=False): if runner_db: - runner_params = fast_deepcopy(getattr(runner_db, "runner_parameters", {})) or {} + runner_params = ( + fast_deepcopy_dict(getattr(runner_db, "runner_parameters", {})) or {} + ) else: runner_params = {} if action_db: - action_params = fast_deepcopy(getattr(action_db, "parameters", {})) or {} + action_params = fast_deepcopy_dict(getattr(action_db, "parameters", {})) or {} else: action_params = {} diff --git a/st2common/st2common/util/deep_copy.py b/st2common/st2common/util/deep_copy.py index 688d23a52d..ab335be25d 100644 --- a/st2common/st2common/util/deep_copy.py +++ b/st2common/st2common/util/deep_copy.py @@ -19,7 +19,7 @@ import orjson -__all__ = ["fast_deepcopy"] +__all__ = ["fast_deepcopy_dict"] def default(obj): @@ -29,7 +29,7 @@ def default(obj): raise TypeError -def fast_deepcopy(value, fall_back_to_deepcopy=True): +def fast_deepcopy_dict(value, fall_back_to_deepcopy=True): """ Perform a fast deep copy of the provided value. diff --git a/st2common/st2common/util/mongoescape.py b/st2common/st2common/util/mongoescape.py index 65c60d3f3e..56c4d18744 100644 --- a/st2common/st2common/util/mongoescape.py +++ b/st2common/st2common/util/mongoescape.py @@ -18,7 +18,7 @@ import six from six.moves import zip -from st2common.util.deep_copy import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy_dict # Note: Because of old rule escaping code, two different characters can be translated back to dot RULE_CRITERIA_UNESCAPED = ["."] @@ -73,7 +73,7 @@ def escape_chars(field): if not isinstance(field, dict) and not isinstance(field, list): return field - value = fast_deepcopy(field) + value = fast_deepcopy_dict(field) return _translate_chars(value, ESCAPE_TRANSLATION) @@ -82,6 +82,6 @@ def unescape_chars(field): if not isinstance(field, dict) and not isinstance(field, list): return field - value = fast_deepcopy(field) + value = fast_deepcopy_dict(field) return _translate_chars(value, UNESCAPE_TRANSLATION) diff --git a/st2common/st2common/util/secrets.py b/st2common/st2common/util/secrets.py index 63bb7b49d5..850152a5fa 100644 --- a/st2common/st2common/util/secrets.py +++ b/st2common/st2common/util/secrets.py @@ -21,7 +21,7 @@ import six -from st2common.util.deep_copy import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy_dict from st2common.constants.secrets import MASKED_ATTRIBUTE_VALUE @@ -170,7 +170,7 @@ def mask_secret_parameters(parameters, secret_parameters, result=None): # all other recursive calls pass back referneces to this result object # so we can reuse it, saving memory and CPU cycles if result is None: - result = fast_deepcopy(parameters) + result = fast_deepcopy_dict(parameters) # iterate over the secret parameters for secret_param, secret_sub_params in iterator: @@ -204,7 +204,7 @@ def mask_inquiry_response(response, schema): :param schema: Inquiry response schema :type schema: ``dict`` """ - result = fast_deepcopy(response) + result = fast_deepcopy_dict(response) for prop_name, prop_attrs in schema["properties"].items(): if prop_attrs.get("secret") is True: diff --git a/st2common/tests/unit/test_misc_utils.py b/st2common/tests/unit/test_misc_utils.py index 7aa93933cc..4890f12756 100644 --- a/st2common/tests/unit/test_misc_utils.py +++ b/st2common/tests/unit/test_misc_utils.py @@ -22,7 +22,7 @@ from st2common.util.misc import strip_shell_chars from st2common.util.misc import lowercase_value from st2common.util.misc import sanitize_output -from st2common.util.deep_copy import fast_deepcopy +from st2common.util.deep_copy import fast_deepcopy_dict __all__ = ["MiscUtilTestCase"] @@ -65,7 +65,7 @@ def test_lowercase_value(self): expected_value = {"testa": "testb", "testc": "testd", "teste": "teste"} self.assertEqual(expected_value, lowercase_value(value=value)) - def test_fast_deepcopy_success(self): + def test_fast_deepcopy_dict_success(self): class Foo(object): a = 1 b = 2 @@ -90,7 +90,7 @@ class Foo(object): ] for value, expected_value in zip(values, expected_values): - result = fast_deepcopy(value) + result = fast_deepcopy_dict(value) self.assertEqual(result, value) self.assertEqual(result, expected_value) @@ -98,7 +98,7 @@ class Foo(object): value = {"a": 1, "b": [1, 2, 3], "c": obj} expected_value = {"a": 1, "b": [1, 2, 3]} - result = fast_deepcopy(value) + result = fast_deepcopy_dict(value) result_c = result.pop("c") self.assertEqual(result, expected_value) self.assertEqual(result_c.a, 1) @@ -107,7 +107,9 @@ class Foo(object): self.assertEqual(result_c.d, [1, 2, 3]) # fall_back_to_deepcopy=False - self.assertRaises(TypeError, fast_deepcopy, value, fall_back_to_deepcopy=False) + self.assertRaises( + TypeError, fast_deepcopy_dict, value, fall_back_to_deepcopy=False + ) def test_sanitize_output_use_pyt_false(self): # pty is not used, \r\n shouldn't be replaced with \n