Error on loading 18plex TMT data

[edemmott]

No description provided.

[edemmott]

Could the plex setting best be handled by simply having the user input the TMTplex total? Or TMT total and number used on the cellenONE (two entries).

Currently within QQC_Object.R:
if(plex == 14){
RI_numb = 18
}
if(plex == 29){
RI_numb = 32
}

[edemmott]

Crucial bits noted so far:

1. Capitalisation of Linker file column headers crucial.
2. CellenONE files, must not use the reordered isolation files.
3. Uncertain - maxquant files included for e.g. match between runs and not derived from the cellenONE preps may need removing.