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archiveInstallationSV2.html
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<!DOCTYPE html>
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<li role="presentation"><a role="menuitem" tabindex="-1" href="archiveInstallationSV2.html"><b><span class="fa fa-sign-in fa-rotate-90"></span> Installation</b></a></li>
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<p><h3>Installation</h3></p>
<li><a href="#installationDownload">Download</a></li>
<li><a href="#installationWindows">Windows</a></li>
<li><a href="#installationMac">Mac</a>
<li><a href="#installationLinux">Linux</a>
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<div class="manInstallationSV2"><section id="installationDownload" class="group"><h1>Downloading SimVascular</h1>
<ol>
<li><p>On the SimVascular hompage, click
<a href="https://simtk.org/project/xml/downloads.xml?group_id=188" target="_blank">Download Installation Package</a>. </p>
<p>Once on simtk.org choose the correct download link:</p>
<pre class="highlight plaintext"><code>Windows: simvascular-2.0.10129-Win64.msi
Mac: simvascular-2.0.10129-darwin-x86_64.dmg
Linux: simvascular-2.0.10129-Linux-x64.tar.gz
</code></pre></li>
<li><p>Login to SimTk or create a new account.</p></li>
<li><p>List your intended use for the software and agree to the license agreement. The download should begin, if not, click the link given and follow the instructions.</p></li>
</ol>
</section>
<section id="installationWindows" class="group"><h1>Installation Instructions for Windows</h1>
<p><br></p>
<h3>1. Prerequisites</h3>
<p>On Windows, SimVascular requires several external packages and runtime libraries to be installed. Depending on your OS and other
software that you have installed, you may have many of the runtime libraries already installed. It is better to be safe
than sorry – if you already have a prerequisite installed, running the installer will do nothing.</p>
<p><em><strong>NOTE:</strong> MPICH2 is needed to run simulations. GDCM is needed to read info from DICOM headers</em></p>
<p><br></p>
<h3>2. Requirements</h3>
<h4>Windows 8</h4>
<p>Windows 8 appears to currently have all the runtime prerequisites installed for the current release of SimVascular, except packags for DICOM and MPICH2.</p>
<h4>Windows 7 / Windows</h4>
<p>Install MSVC & Intel Fortran runtime compiler libraries:</p>
<!--
1. Install vcredist_x86-2008-sp0.exe
2. Install msvc10_vcredist_x64.exe (64-bit machines only)
3. Install msvc2010sp1-vcredist_x64.exe (64 bit machines only)
4. Install msvc10_sp1_vcredist_x86.exe
5. w_fcompxe_redist_intel64_2011.6.233.msi (64-bit machines only)
6. w_fcompxe_redist_ia32_2011.6.233.msi
7. w_fcompxe_redist_intel64_2011.11.344.msi (64-bit machines only)
8. w_fcompxe_redist_ia32_2011.11.344.msi
-->
<pre class="highlight plaintext"><code>NetFx20SP2_x86.exe
</code></pre>
<p>Required External Packages for DICOM</p>
<pre class="highlight plaintext"><code>1. Install Win32OpenSSL_Light-1_0_1c.exe
2. Install GDCM-2.2.1-Windows-x86.exe (Add GDCM to system PATH for ALL users!)
</code></pre>
<p>Required External Packages for SimVascular Flow Solver</p>
<pre class="highlight plaintext"><code>1. Install MPICH2:
mpich2-1.4.1p1-win-x86-64.msi (64-bit machines only)
</code></pre>
<!-- 2. mpich2-1.4.1p1-win-ia32.msi (32-bit machines only) -->
<p><em><strong>NOTE:</strong> install for ALL users. MPICH2 must be installed from the REAL Administrator account, NOT just a user with
administrative privileges!!!! To enable the Administrator account, first you’ll need to open a command prompt in
administrator mode by right-clicking and choosing “Run as administrator” (or use the Ctrl+Shift+Enter shortcut from the
search box) and then typing:</em></p>
<pre class="highlight plaintext"><code>net user administrator /active:yes
</code></pre>
<figure>
<img class="svImg svImgSm" src="archives/sv2/installation/imgs/mpich.jpg">
<figcaption class="svCaption" >Open Command Prompt in Administrator Mode</figcaption>
</figure>
<p><em>Remember to add a password for the administrator account and re-login with the account to install MPICH2!</em></p>
<p><br></p>
<h3>3. Installing SimVascular</h3>
<p>Install SimVascular & configure firewall (for flow solver if needed):</p>
<pre class="highlight plaintext"><code>1. Install simvascular-2.0.xxxxx-Win-x64.msi
2. Add exceptions to Windows Firewall for “flowsolver.exe” and “mpiexec.exe” installed under the SimVascular installation folder in “Program Files". Be careful since “private” networks and “public” networks have different settings.
</code></pre>
<p><br></p>
</section>
<section id="installationMac" class="group"><h1>Installation Instructions for Apple OS X</h1>
<ol>
<li><p>Launch the downloaded package and agree to the terms of service.</p></li>
<li><p>Drag SimVascular into your Applications folder when this window opens.</p>
<figure>
<img class="svImg svImgXl" src="archives/sv2/installation/imgs/macDrag.png">
<figcaption class="svCaption" ></figcaption>
</figure></li>
<li><p>Launch SimVascular through your Applications folder or using the Terminal (see step 5).</p></li>
<li><p>(Optional) To run svSolver from the GUI, you will need to install mpich through MacPorts. MacPorts is available at <a href="https://www.macports.org/"target="blank"> macports.org</a>:</p>
<pre class="highlight plaintext"><code>sudo port install mpich-gcc46
</code></pre></li>
<li><p>(Optional) To install the SimvVascular command line tools run:</p>
<pre class="highlight plaintext"><code>sudo /Applications/SimVascular.app/Contents/Resources/setup-symlinks.sh
</code></pre></li>
</ol>
</section>
<section id="installationLinux" class="group"><h1>Installation Instructions for Linux</h1>
<ol>
<li><p>Before installing SimVascular, you may need to install libxss, mpich2, or libgfortran. If you’re on linux these may work:</p>
<pre class="highlight plaintext"><code>sudo apt-get install libxss
sudo apt-get install mpich2
sudo apt-get install gfortran
</code></pre></li>
<li><p>To use Meshim on linux copy your Meshsim license file into the simvascular directory and rename it meshsim-license.dat</p></li>
<li><p>To add SimVascular to your path (this is very helpful with using svsolver), you will need to run the post-install script:</p>
<pre class="highlight plaintext"><code>sudo bash setup-symlinks.sh
</code></pre>
<p>This script places symbolic links in /usr/local/bin to the simvascular executable scripts.
You may wish to edit the symbolic links.</p>
<p>Note that the solver can be run with mpiexec.
For example to run on two processors:</p>
<pre class="highlight plaintext"><code>cd /folder/with/input
mpiexec -np 2 svsolver
</code></pre></li>
</ol>
</section>
<section id="Command Line Tools" class="group"><h2>Running SimVascular From the Command Line</h2>
<p><strong>Note:</strong> Currently, Windows does not support command line tools
<br>
<br></p>
<table class="table table-bordered">
<thead>
<tr>
<th>Executable</th>
<th>Linux/OSX Script</th>
</tr>
</thead>
<tr>
<td>SimVascular</td>
<td>simvascular</td>
</tr>
<tr>
<td>svSolver</td>
<td>svsolver</td>
</tr>
<tr>
<td>svAdapt</td>
<td>svadapt</td>
</tr>
<tr>
<td>svTetAdapt</td>
<td>svtetadapt</td>
</tr>
<tr>
<td>svPost</td>
<td>svpost</td>
</tr>
</table>
<p><br>
<br>
<br></p>
</section>
</div>
</div>
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