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Docker image build error with sklearn_iris_docker example #164

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koverholt opened this issue Jun 11, 2018 · 5 comments
Closed

Docker image build error with sklearn_iris_docker example #164

koverholt opened this issue Jun 11, 2018 · 5 comments
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@gsunner

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@koverholt
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I'm unable to build the Docker image for the sklearn_iris_docker example. It's failing at the numpy build stage.

I tried upgrading pip and adding some dependencies with apk per https://stackoverflow.com/questions/33421965/installing-numpy-on-docker-alpine, but I had the same issue.

Stacktrace:

Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-fUc8dq/pandas/setup.py", line 631, in <module>
        **setuptools_kwargs)
      File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
        _setup_distribution = dist = klass(attrs)
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 317, in __init__
        self.fetch_build_eggs(attrs['setup_requires'])
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 372, in fetch_build_eggs
        replace_conflicting=True,
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 846, in resolve
        dist = best[req.key] = env.best_match(req, ws, installer)
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1118, in best_match
        return self.obtain(req, installer)
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1130, in obtain
        return installer(requirement)
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 440, in fetch_build_egg
        return cmd.easy_install(req)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 674, in easy_install
        return self.install_item(spec, dist.location, tmpdir, deps)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 700, in install_item
        dists = self.install_eggs(spec, download, tmpdir)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 881, in install_eggs
        return self.build_and_install(setup_script, setup_base)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1120, in build_and_install
        self.run_setup(setup_script, setup_base, args)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1108, in run_setup
        raise DistutilsError("Setup script exited with %s" % (v.args[0],))
    distutils.errors.DistutilsError: Setup script exited with error: Command "gcc -fno-strict-aliasing -Os -fomit-frame-pointer -g -DNDEBUG -Os -fomit-frame-pointer -g -DTHREAD_STACK_SIZE=0x100000 -fPIC -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.o.d" failed with exit status 1

System information:

$ uname -a
Linux ae-ml-dev 3.10.0-862.3.2.el7.x86_64 #1 SMP Mon May 21 23:36:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux

$ cat /etc/*release*
CentOS Linux release 7.5.1804 (Core)
Derived from Red Hat Enterprise Linux 7.5 (Source)
NAME="CentOS Linux"
VERSION="7 (Core)"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="7"
PRETTY_NAME="CentOS Linux 7 (Core)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:7"
HOME_URL="https://www.centos.org/"
BUG_REPORT_URL="https://bugs.centos.org/"

CENTOS_MANTISBT_PROJECT="CentOS-7"
CENTOS_MANTISBT_PROJECT_VERSION="7"
REDHAT_SUPPORT_PRODUCT="centos"
REDHAT_SUPPORT_PRODUCT_VERSION="7"

CentOS Linux release 7.5.1804 (Core)
CentOS Linux release 7.5.1804 (Core)
cpe:/o:centos:centos:7

$ docker --version
Docker version 18.03.1-ce, build 9ee9f40

Full logs:

$ cd seldon-core/examples/models/sklearn_iris_docker
$ make
docker build \
  --build-arg IMAGE_REPO=seldonio \
  --build-arg IMAGE_VERSION=0.1 \
  --build-arg MODEL_NAME=IrisClassifier \
  --tag seldonio/irisclassifier:0.1 .
Sending build context to Docker daemon  9.216kB
Step 1/28 : FROM alpine:3.7 as build-alpine
 ---> 3fd9065eaf02
Step 2/28 : RUN apk add --update     build-base     freetype-dev     gcc     gfortran     libc6-compat     libffi-dev     libpng-dev     openblas-dev     openssl-dev     py2-pip     python2     python2-dev    wget     && true
 ---> Running in 00a7e59023c0
fetch http://dl-cdn.alpinelinux.org/alpine/v3.7/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.7/community/x86_64/APKINDEX.tar.gz
(1/50) Upgrading musl (1.1.18-r2 -> 1.1.18-r3)
(2/50) Installing binutils-libs (2.30-r1)
(3/50) Installing binutils (2.30-r1)
(4/50) Installing gmp (6.1.2-r1)
(5/50) Installing isl (0.18-r0)
(6/50) Installing libgomp (6.4.0-r5)
(7/50) Installing libatomic (6.4.0-r5)
(8/50) Installing pkgconf (1.3.10-r0)
(9/50) Installing libgcc (6.4.0-r5)
(10/50) Installing mpfr3 (3.1.5-r1)
(11/50) Installing mpc1 (1.0.3-r1)
(12/50) Installing libstdc++ (6.4.0-r5)
(13/50) Installing gcc (6.4.0-r5)
(14/50) Installing musl-dev (1.1.18-r3)
(15/50) Installing libc-dev (0.7.1-r0)
(16/50) Installing g++ (6.4.0-r5)
(17/50) Installing make (4.2.1-r0)
(18/50) Installing fortify-headers (0.9-r0)
(19/50) Installing build-base (0.5-r0)
(20/50) Installing libbz2 (1.0.6-r6)
(21/50) Installing libpng (1.6.34-r1)
(22/50) Installing freetype (2.8.1-r2)
(23/50) Installing zlib-dev (1.2.11-r1)
(24/50) Installing libpng-dev (1.6.34-r1)
(25/50) Installing freetype-dev (2.8.1-r2)
(26/50) Installing libquadmath (6.4.0-r5)
(27/50) Installing libgfortran (6.4.0-r5)
(28/50) Installing gfortran (6.4.0-r5)
(29/50) Upgrading musl-utils (1.1.18-r2 -> 1.1.18-r3)
(30/50) Installing libc6-compat (1.1.18-r3)
(31/50) Installing libffi (3.2.1-r4)
(32/50) Installing libffi-dev (3.2.1-r4)
(33/50) Installing openblas-ilp64 (0.2.19-r3)
(34/50) Installing openblas (0.2.19-r3)
(35/50) Installing openblas-dev (0.2.19-r3)
(36/50) Installing libcrypto1.0 (1.0.2o-r0)
(37/50) Installing libssl1.0 (1.0.2o-r0)
(38/50) Installing openssl-dev (1.0.2o-r0)
(39/50) Installing expat (2.2.5-r0)
(40/50) Installing gdbm (1.13-r1)
(41/50) Installing ncurses-terminfo-base (6.0_p20171125-r0)
(42/50) Installing ncurses-terminfo (6.0_p20171125-r0)
(43/50) Installing ncurses-libs (6.0_p20171125-r0)
(44/50) Installing readline (7.0.003-r0)
(45/50) Installing sqlite-libs (3.21.0-r1)
(46/50) Installing python2 (2.7.14-r2)
(47/50) Installing py-setuptools (33.1.1-r1)
(48/50) Installing py2-pip (9.0.1-r1)
(49/50) Installing python2-dev (2.7.14-r2)
(50/50) Installing wget (1.19.5-r0)
Executing busybox-1.27.2-r7.trigger
OK: 458 MiB in 59 packages
Removing intermediate container 00a7e59023c0
 ---> 82dbbbf825fc
Step 3/28 : RUN ln -s /usr/include/locale.h /usr/include/xlocale.h
 ---> Running in 0f8306aa78eb
Removing intermediate container 0f8306aa78eb
 ---> 064da9b685cf
Step 4/28 : RUN mkdir -p /out/etc/apk && cp -r /etc/apk/* /out/etc/apk/
 ---> Running in c3286f8b1ed4
Removing intermediate container c3286f8b1ed4
 ---> a147d72d4f49
Step 5/28 : RUN apk add --no-cache --initdb --root /out     alpine-baselayout     busybox     ca-certificates     freetype     libc6-compat     libffi     libpng     libstdc++     musl     openblas     openssl     python2     && true
 ---> Running in afa8bab6266f
fetch http://dl-cdn.alpinelinux.org/alpine/v3.7/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.7/community/x86_64/APKINDEX.tar.gz
(1/30) Installing musl (1.1.18-r3)
(2/30) Installing busybox (1.27.2-r11)
Executing busybox-1.27.2-r11.post-install
(3/30) Installing alpine-baselayout (3.0.5-r2)
Executing alpine-baselayout-3.0.5-r2.pre-install
Executing alpine-baselayout-3.0.5-r2.post-install
(4/30) Installing libressl2.6-libcrypto (2.6.4-r2)
(5/30) Installing ca-certificates (20171114-r0)
(6/30) Installing libbz2 (1.0.6-r6)
(7/30) Installing zlib (1.2.11-r1)
(8/30) Installing libpng (1.6.34-r1)
(9/30) Installing freetype (2.8.1-r2)
(10/30) Installing libc6-compat (1.1.18-r3)
(11/30) Installing libffi (3.2.1-r4)
(12/30) Installing libgcc (6.4.0-r5)
(13/30) Installing libstdc++ (6.4.0-r5)
(14/30) Installing libquadmath (6.4.0-r5)
(15/30) Installing libgfortran (6.4.0-r5)
(16/30) Installing openblas (0.2.19-r3)
(17/30) Installing libcrypto1.0 (1.0.2o-r0)
(18/30) Installing libssl1.0 (1.0.2o-r0)
(19/30) Installing openssl (1.0.2o-r0)
(20/30) Installing expat (2.2.5-r0)
(21/30) Installing gdbm (1.13-r1)
(22/30) Installing ncurses-terminfo-base (6.0_p20171125-r0)
(23/30) Installing ncurses-terminfo (6.0_p20171125-r0)
(24/30) Installing ncurses-libs (6.0_p20171125-r0)
(25/30) Installing readline (7.0.003-r0)
(26/30) Installing sqlite-libs (3.21.0-r1)
(27/30) Installing libressl2.6-libssl (2.6.4-r2)
(28/30) Installing libressl2.6-libtls (2.6.4-r2)
(29/30) Installing ssl_client (1.27.2-r11)
(30/30) Installing python2 (2.7.14-r2)
Executing busybox-1.27.2-r11.trigger
Executing ca-certificates-20171114-r0.trigger
OK: 93 MiB in 30 packages
Removing intermediate container afa8bab6266f
 ---> 986043d44641
Step 6/28 : RUN rm -rf /out/etc/apk /out/lib/apk /out/var/cache
 ---> Running in 12c5619c34a8
Removing intermediate container 12c5619c34a8
 ---> 8220d52ace44
Step 7/28 : COPY . /src
 ---> 275d11990a10
Step 8/28 : WORKDIR /src
Removing intermediate container 3c255a6146e6
 ---> cf98b7147d55
Step 9/28 : RUN pip install --requirement requirements.txt
 ---> Running in fcaf0403e89b
Collecting numpy==1.11.2 (from -r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/16/f5/b432f028134dd30cfbf6f21b8264a9938e5e0f75204e72453af08d67eb0b/numpy-1.11.2.tar.gz (4.2MB)
Collecting pandas==0.18.1 (from -r requirements.txt (line 2))
  Downloading https://files.pythonhosted.org/packages/11/09/e66eb844daba8680ddff26335d5b4fead77f60f957678243549a8dd4830d/pandas-0.18.1.tar.gz (7.3MB)
    Complete output from command python setup.py egg_info:
    Running from numpy source directory.
    /tmp/easy_install-xjA3le/numpy-1.14.4/setup.py:369: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
      run_build = parse_setuppy_commands()
    /bin/sh: svnversion: not found
    non-existing path in 'numpy/distutils': 'site.cfg'
    /bin/sh: svnversion: not found
    /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'define_macros'
      warnings.warn(msg)
    _configtest.c:1:5: warning: conflicting types for built-in function 'exp'
     int exp (void);
         ^~~
    _configtest.c:1:24: fatal error: sys/endian.h: No such file or directory
     #include <sys/endian.h>
                            ^
    compilation terminated.
    _configtest.c:1:24: fatal error: sys/endian.h: No such file or directory
     #include <sys/endian.h>
                            ^
    compilation terminated.
    _configtest.c: In function 'main':
    _configtest.c:7:12: error: 'SIZEOF_LONGDOUBLE' undeclared (first use in this function)
         (void) SIZEOF_LONGDOUBLE;
                ^~~~~~~~~~~~~~~~~
    _configtest.c:7:12: note: each undeclared identifier is reported only once for each function it appears in
    _configtest.c: In function 'main':
    _configtest.c:7:12: error: 'SIZEOF_LONGDOUBLE' undeclared (first use in this function)
         (void) SIZEOF_LONGDOUBLE;
                ^~~~~~~~~~~~~~~~~
    _configtest.c:7:12: note: each undeclared identifier is reported only once for each function it appears in
    _configtest.c:1:5: warning: conflicting types for built-in function 'exp'
     int exp (void);
         ^~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'asin'
     int asin (void);
         ^~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'cos'
     int cos (void);
         ^~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'log'
     int log (void);
         ^~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'fabs'
     int fabs (void);
         ^~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'tanh'
     int tanh (void);
         ^~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'atan'
     int atan (void);
         ^~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'acos'
     int acos (void);
         ^~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'floor'
     int floor (void);
         ^~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'fmod'
     int fmod (void);
         ^~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'sqrt'
     int sqrt (void);
         ^~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'cosh'
     int cosh (void);
         ^~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'modf'
     int modf (void);
         ^~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'sinh'
     int sinh (void);
         ^~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'frexp'
     int frexp (void);
         ^~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'exp'
     int exp (void);
         ^~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'tan'
     int tan (void);
         ^~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'ceil'
     int ceil (void);
         ^~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'log10'
     int log10 (void);
         ^~~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'sin'
     int sin (void);
         ^~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'ldexp'
     int ldexp (void);
         ^~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'log2'
     int log2 (void);
         ^~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'pow'
     int pow (void);
         ^~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'exp2'
     int exp2 (void);
         ^~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'atan2'
     int atan2 (void);
         ^~~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'rint'
     int rint (void);
         ^~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'cbrt'
     int cbrt (void);
         ^~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'nextafter'
     int nextafter (void);
         ^~~~~~~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'trunc'
     int trunc (void);
         ^~~~~
    _configtest.o: In function `main':
    /tmp/easy_install-xjA3le/numpy-1.14.4/_configtest.c:42: undefined reference to `backtrace'
    collect2: error: ld returned 1 exit status
    _configtest.o: In function `main':
    /tmp/easy_install-xjA3le/numpy-1.14.4/_configtest.c:42: undefined reference to `backtrace'
    collect2: error: ld returned 1 exit status
    _configtest.c:1:5: warning: conflicting types for built-in function 'rint'
     int rint (void);
         ^~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'trunc'
     int trunc (void);
         ^~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'exp2'
     int exp2 (void);
         ^~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'log2'
     int log2 (void);
         ^~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'atan2'
     int atan2 (void);
         ^~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'pow'
     int pow (void);
         ^~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'nextafter'
     int nextafter (void);
         ^~~~~~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'cbrt'
     int cbrt (void);
         ^~~~
    _configtest.o: In function `main':
    /tmp/easy_install-xjA3le/numpy-1.14.4/_configtest.c:6: undefined reference to `backtrace'
    collect2: error: ld returned 1 exit status
    _configtest.o: In function `main':
    /tmp/easy_install-xjA3le/numpy-1.14.4/_configtest.c:6: undefined reference to `backtrace'
    collect2: error: ld returned 1 exit status
    _configtest.c: In function '__declspec':
    _configtest.c:5:24: error: expected declaration specifiers before 'foo'
     int __declspec(thread) foo;
                            ^~~
    _configtest.c:9:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before '{' token
     {
     ^
    _configtest.c:5:5: warning: type of 'thread' defaults to 'int' [-Wimplicit-int]
     int __declspec(thread) foo;
         ^~~~~~~~~~
    _configtest.c:11:1: error: expected '{' at end of input
     }
     ^
    _configtest.c: In function '__declspec':
    _configtest.c:5:24: error: expected declaration specifiers before 'foo'
     int __declspec(thread) foo;
                            ^~~
    _configtest.c:9:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before '{' token
     {
     ^
    _configtest.c:5:5: warning: type of 'thread' defaults to 'int' [-Wimplicit-int]
     int __declspec(thread) foo;
         ^~~~~~~~~~
    _configtest.c:11:1: error: expected '{' at end of input
     }
     ^
    _configtest.c:1:5: warning: conflicting types for built-in function 'cosf'
     int cosf (void);
         ^~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'coshf'
     int coshf (void);
         ^~~~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'rintf'
     int rintf (void);
         ^~~~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'fabsf'
     int fabsf (void);
         ^~~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'floorf'
     int floorf (void);
         ^~~~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'nextafterf'
     int nextafterf (void);
         ^~~~~~~~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'tanhf'
     int tanhf (void);
         ^~~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'log10f'
     int log10f (void);
         ^~~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'logf'
     int logf (void);
         ^~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'sinhf'
     int sinhf (void);
         ^~~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'acosf'
     int acosf (void);
         ^~~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'sqrtf'
     int sqrtf (void);
         ^~~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'ldexpf'
     int ldexpf (void);
         ^~~~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'hypotf'
     int hypotf (void);
         ^~~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'log2f'
     int log2f (void);
         ^~~~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'exp2f'
     int exp2f (void);
         ^~~~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'atanf'
     int atanf (void);
         ^~~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'fmodf'
     int fmodf (void);
         ^~~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'atan2f'
     int atan2f (void);
         ^~~~~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'cbrtf'
     int cbrtf (void);
         ^~~~~
    _configtest.c:21:5: warning: conflicting types for built-in function 'modff'
     int modff (void);
         ^~~~~
    _configtest.c:22:5: warning: conflicting types for built-in function 'ceilf'
     int ceilf (void);
         ^~~~~
    _configtest.c:23:5: warning: conflicting types for built-in function 'log1pf'
     int log1pf (void);
         ^~~~~~
    _configtest.c:24:5: warning: conflicting types for built-in function 'asinf'
     int asinf (void);
         ^~~~~
    _configtest.c:25:5: warning: conflicting types for built-in function 'copysignf'
     int copysignf (void);
         ^~~~~~~~~
    _configtest.c:26:5: warning: conflicting types for built-in function 'acoshf'
     int acoshf (void);
         ^~~~~~
    _configtest.c:27:5: warning: conflicting types for built-in function 'sinf'
     int sinf (void);
         ^~~~
    _configtest.c:28:5: warning: conflicting types for built-in function 'tanf'
     int tanf (void);
         ^~~~
    _configtest.c:29:5: warning: conflicting types for built-in function 'atanhf'
     int atanhf (void);
         ^~~~~~
    _configtest.c:30:5: warning: conflicting types for built-in function 'truncf'
     int truncf (void);
         ^~~~~~
    _configtest.c:31:5: warning: conflicting types for built-in function 'asinhf'
     int asinhf (void);
         ^~~~~~
    _configtest.c:32:5: warning: conflicting types for built-in function 'frexpf'
     int frexpf (void);
         ^~~~~~
    _configtest.c:33:5: warning: conflicting types for built-in function 'powf'
     int powf (void);
         ^~~~
    _configtest.c:34:5: warning: conflicting types for built-in function 'expf'
     int expf (void);
         ^~~~
    _configtest.c:35:5: warning: conflicting types for built-in function 'expm1f'
     int expm1f (void);
         ^~~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'tanhl'
     int tanhl (void);
         ^~~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'log10l'
     int log10l (void);
         ^~~~~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'nextafterl'
     int nextafterl (void);
         ^~~~~~~~~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'coshl'
     int coshl (void);
         ^~~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'cosl'
     int cosl (void);
         ^~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'floorl'
     int floorl (void);
         ^~~~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'rintl'
     int rintl (void);
         ^~~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'fabsl'
     int fabsl (void);
         ^~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'acosl'
     int acosl (void);
         ^~~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'ldexpl'
     int ldexpl (void);
         ^~~~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'sqrtl'
     int sqrtl (void);
         ^~~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'logl'
     int logl (void);
         ^~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'expm1l'
     int expm1l (void);
         ^~~~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'hypotl'
     int hypotl (void);
         ^~~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'log2l'
     int log2l (void);
         ^~~~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'copysignl'
     int copysignl (void);
         ^~~~~~~~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'exp2l'
     int exp2l (void);
         ^~~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'atanl'
     int atanl (void);
         ^~~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'frexpl'
     int frexpl (void);
         ^~~~~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'atan2l'
     int atan2l (void);
         ^~~~~~
    _configtest.c:21:5: warning: conflicting types for built-in function 'sinhl'
     int sinhl (void);
         ^~~~~
    _configtest.c:22:5: warning: conflicting types for built-in function 'fmodl'
     int fmodl (void);
         ^~~~~
    _configtest.c:23:5: warning: conflicting types for built-in function 'log1pl'
     int log1pl (void);
         ^~~~~~
    _configtest.c:24:5: warning: conflicting types for built-in function 'asinl'
     int asinl (void);
         ^~~~~
    _configtest.c:25:5: warning: conflicting types for built-in function 'ceill'
     int ceill (void);
         ^~~~~
    _configtest.c:26:5: warning: conflicting types for built-in function 'sinl'
     int sinl (void);
         ^~~~
    _configtest.c:27:5: warning: conflicting types for built-in function 'cbrtl'
     int cbrtl (void);
         ^~~~~
    _configtest.c:28:5: warning: conflicting types for built-in function 'acoshl'
     int acoshl (void);
         ^~~~~~
    _configtest.c:29:5: warning: conflicting types for built-in function 'atanhl'
     int atanhl (void);
         ^~~~~~
    _configtest.c:30:5: warning: conflicting types for built-in function 'tanl'
     int tanl (void);
         ^~~~
    _configtest.c:31:5: warning: conflicting types for built-in function 'truncl'
     int truncl (void);
         ^~~~~~
    _configtest.c:32:5: warning: conflicting types for built-in function 'powl'
     int powl (void);
         ^~~~
    _configtest.c:33:5: warning: conflicting types for built-in function 'expl'
     int expl (void);
         ^~~~
    _configtest.c:34:5: warning: conflicting types for built-in function 'modfl'
     int modfl (void);
         ^~~~~
    _configtest.c:35:5: warning: conflicting types for built-in function 'asinhl'
     int asinhl (void);
         ^~~~~~
    _configtest.c: In function 'main':
    _configtest.c:8:12: error: 'HAVE_DECL_SIGNBIT' undeclared (first use in this function)
         (void) HAVE_DECL_SIGNBIT;
                ^~~~~~~~~~~~~~~~~
    _configtest.c:8:12: note: each undeclared identifier is reported only once for each function it appears in
    _configtest.c: In function 'main':
    _configtest.c:8:12: error: 'HAVE_DECL_SIGNBIT' undeclared (first use in this function)
         (void) HAVE_DECL_SIGNBIT;
                ^~~~~~~~~~~~~~~~~
    _configtest.c:8:12: note: each undeclared identifier is reported only once for each function it appears in
    _configtest.c:1:5: warning: conflicting types for built-in function 'clog'
     int clog (void);
         ^~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'ctan'
     int ctan (void);
         ^~~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'casinh'
     int casinh (void);
         ^~~~~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'cacosh'
     int cacosh (void);
         ^~~~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'cabs'
     int cabs (void);
         ^~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'conj'
     int conj (void);
         ^~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'csqrt'
     int csqrt (void);
         ^~~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'creal'
     int creal (void);
         ^~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'cproj'
     int cproj (void);
         ^~~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'cpow'
     int cpow (void);
         ^~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'csinh'
     int csinh (void);
         ^~~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'catan'
     int catan (void);
         ^~~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'ctanh'
     int ctanh (void);
         ^~~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'ccosh'
     int ccosh (void);
         ^~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'cimag'
     int cimag (void);
         ^~~~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'casin'
     int casin (void);
         ^~~~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'carg'
     int carg (void);
         ^~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'csin'
     int csin (void);
         ^~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'cexp'
     int cexp (void);
         ^~~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'ccos'
     int ccos (void);
         ^~~~
    _configtest.c:21:5: warning: conflicting types for built-in function 'cacos'
     int cacos (void);
         ^~~~~
    _configtest.c:22:5: warning: conflicting types for built-in function 'catanh'
     int catanh (void);
         ^~~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'ctanhf'
     int ctanhf (void);
         ^~~~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'csinhf'
     int csinhf (void);
         ^~~~~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'cprojf'
     int cprojf (void);
         ^~~~~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'cacoshf'
     int cacoshf (void);
         ^~~~~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'cacosf'
     int cacosf (void);
         ^~~~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'cargf'
     int cargf (void);
         ^~~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'cpowf'
     int cpowf (void);
         ^~~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'csinf'
     int csinf (void);
         ^~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'clogf'
     int clogf (void);
         ^~~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'ccoshf'
     int ccoshf (void);
         ^~~~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'conjf'
     int conjf (void);
         ^~~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'casinhf'
     int casinhf (void);
         ^~~~~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'ccosf'
     int ccosf (void);
         ^~~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'ctanf'
     int ctanf (void);
         ^~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'cexpf'
     int cexpf (void);
         ^~~~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'cimagf'
     int cimagf (void);
         ^~~~~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'catanhf'
     int catanhf (void);
         ^~~~~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'casinf'
     int casinf (void);
         ^~~~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'catanf'
     int catanf (void);
         ^~~~~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'csqrtf'
     int csqrtf (void);
         ^~~~~~
    _configtest.c:21:5: warning: conflicting types for built-in function 'crealf'
     int crealf (void);
         ^~~~~~
    _configtest.c:22:5: warning: conflicting types for built-in function 'cabsf'
     int cabsf (void);
         ^~~~~
    _configtest.c:1:5: warning: conflicting types for built-in function 'csinhl'
     int csinhl (void);
         ^~~~~~
    _configtest.c:2:5: warning: conflicting types for built-in function 'ctanhl'
     int ctanhl (void);
         ^~~~~~
    _configtest.c:3:5: warning: conflicting types for built-in function 'cacosl'
     int cacosl (void);
         ^~~~~~
    _configtest.c:4:5: warning: conflicting types for built-in function 'cacoshl'
     int cacoshl (void);
         ^~~~~~~
    _configtest.c:5:5: warning: conflicting types for built-in function 'cprojl'
     int cprojl (void);
         ^~~~~~
    _configtest.c:6:5: warning: conflicting types for built-in function 'cargl'
     int cargl (void);
         ^~~~~
    _configtest.c:7:5: warning: conflicting types for built-in function 'ccoshl'
     int ccoshl (void);
         ^~~~~~
    _configtest.c:8:5: warning: conflicting types for built-in function 'conjl'
     int conjl (void);
         ^~~~~
    _configtest.c:9:5: warning: conflicting types for built-in function 'csinl'
     int csinl (void);
         ^~~~~
    _configtest.c:10:5: warning: conflicting types for built-in function 'clogl'
     int clogl (void);
         ^~~~~
    _configtest.c:11:5: warning: conflicting types for built-in function 'cexpl'
     int cexpl (void);
         ^~~~~
    _configtest.c:12:5: warning: conflicting types for built-in function 'ccosl'
     int ccosl (void);
         ^~~~~
    _configtest.c:13:5: warning: conflicting types for built-in function 'ctanl'
     int ctanl (void);
         ^~~~~
    _configtest.c:14:5: warning: conflicting types for built-in function 'cpowl'
     int cpowl (void);
         ^~~~~
    _configtest.c:15:5: warning: conflicting types for built-in function 'casinhl'
     int casinhl (void);
         ^~~~~~~
    _configtest.c:16:5: warning: conflicting types for built-in function 'csqrtl'
     int csqrtl (void);
         ^~~~~~
    _configtest.c:17:5: warning: conflicting types for built-in function 'casinl'
     int casinl (void);
         ^~~~~~
    _configtest.c:18:5: warning: conflicting types for built-in function 'catanl'
     int catanl (void);
         ^~~~~~
    _configtest.c:19:5: warning: conflicting types for built-in function 'catanhl'
     int catanhl (void);
         ^~~~~~~
    _configtest.c:20:5: warning: conflicting types for built-in function 'creall'
     int creall (void);
         ^~~~~~
    _configtest.c:21:5: warning: conflicting types for built-in function 'cabsl'
     int cabsl (void);
         ^~~~~
    _configtest.c:22:5: warning: conflicting types for built-in function 'cimagl'
     int cimagl (void);
         ^~~~~~
    File: build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h
    #define HAVE_ENDIAN_H 1
    #define SIZEOF_PY_INTPTR_T 8
    #define SIZEOF_OFF_T 8
    #define SIZEOF_PY_LONG_LONG 8
    #define MATHLIB
    #define HAVE_SIN 1
    #define HAVE_COS 1
    #define HAVE_TAN 1
    #define HAVE_SINH 1
    #define HAVE_COSH 1
    #define HAVE_TANH 1
    #define HAVE_FABS 1
    #define HAVE_FLOOR 1
    #define HAVE_CEIL 1
    #define HAVE_SQRT 1
    #define HAVE_LOG10 1
    #define HAVE_LOG 1
    #define HAVE_EXP 1
    #define HAVE_ASIN 1
    #define HAVE_ACOS 1
    #define HAVE_ATAN 1
    #define HAVE_FMOD 1
    #define HAVE_MODF 1
    #define HAVE_FREXP 1
    #define HAVE_LDEXP 1
    #define HAVE_RINT 1
    #define HAVE_TRUNC 1
    #define HAVE_EXP2 1
    #define HAVE_LOG2 1
    #define HAVE_ATAN2 1
    #define HAVE_POW 1
    #define HAVE_NEXTAFTER 1
    #define HAVE_STRTOLL 1
    #define HAVE_STRTOULL 1
    #define HAVE_CBRT 1
    #define HAVE_STRTOLD_L 1
    #define HAVE_FALLOCATE 1
    #define HAVE_XMMINTRIN_H 1
    #define HAVE_EMMINTRIN_H 1
    #define HAVE_FEATURES_H 1
    #define HAVE_XLOCALE_H 1
    #define HAVE_DLFCN_H 1
    #define HAVE___BUILTIN_ISNAN 1
    #define HAVE___BUILTIN_ISINF 1
    #define HAVE___BUILTIN_ISFINITE 1
    #define HAVE___BUILTIN_BSWAP32 1
    #define HAVE___BUILTIN_BSWAP64 1
    #define HAVE___BUILTIN_EXPECT 1
    #define HAVE___BUILTIN_MUL_OVERFLOW 1
    #define HAVE___BUILTIN_CPU_SUPPORTS 1
    #define HAVE__M_FROM_INT64 1
    #define HAVE__MM_LOAD_PS 1
    #define HAVE__MM_PREFETCH 1
    #define HAVE__MM_LOAD_PD 1
    #define HAVE___BUILTIN_PREFETCH 1
    #define HAVE_LINK_AVX 1
    #define HAVE_LINK_AVX2 1
    #define HAVE_ATTRIBUTE_OPTIMIZE_UNROLL_LOOPS 1
    #define HAVE_ATTRIBUTE_OPTIMIZE_OPT_3 1
    #define HAVE_ATTRIBUTE_NONNULL 1
    #define HAVE_ATTRIBUTE_TARGET_AVX 1
    #define HAVE_ATTRIBUTE_TARGET_AVX2 1
    #define HAVE___THREAD 1
    #define HAVE_SINF 1
    #define HAVE_COSF 1
    #define HAVE_TANF 1
    #define HAVE_SINHF 1
    #define HAVE_COSHF 1
    #define HAVE_TANHF 1
    #define HAVE_FABSF 1
    #define HAVE_FLOORF 1
    #define HAVE_CEILF 1
    #define HAVE_RINTF 1
    #define HAVE_TRUNCF 1
    #define HAVE_SQRTF 1
    #define HAVE_LOG10F 1
    #define HAVE_LOGF 1
    #define HAVE_LOG1PF 1
    #define HAVE_EXPF 1
    #define HAVE_EXPM1F 1
    #define HAVE_ASINF 1
    #define HAVE_ACOSF 1
    #define HAVE_ATANF 1
    #define HAVE_ASINHF 1
    #define HAVE_ACOSHF 1
    #define HAVE_ATANHF 1
    #define HAVE_HYPOTF 1
    #define HAVE_ATAN2F 1
    #define HAVE_POWF 1
    #define HAVE_FMODF 1
    #define HAVE_MODFF 1
    #define HAVE_FREXPF 1
    #define HAVE_LDEXPF 1
    #define HAVE_EXP2F 1
    #define HAVE_LOG2F 1
    #define HAVE_COPYSIGNF 1
    #define HAVE_NEXTAFTERF 1
    #define HAVE_CBRTF 1
    #define HAVE_SINL 1
    #define HAVE_COSL 1
    #define HAVE_TANL 1
    #define HAVE_SINHL 1
    #define HAVE_COSHL 1
    #define HAVE_TANHL 1
    #define HAVE_FABSL 1
    #define HAVE_FLOORL 1
    #define HAVE_CEILL 1
    #define HAVE_RINTL 1
    #define HAVE_TRUNCL 1
    #define HAVE_SQRTL 1
    #define HAVE_LOG10L 1
    #define HAVE_LOGL 1
    #define HAVE_LOG1PL 1
    #define HAVE_EXPL 1
    #define HAVE_EXPM1L 1
    #define HAVE_ASINL 1
    #define HAVE_ACOSL 1
    #define HAVE_ATANL 1
    #define HAVE_ASINHL 1
    #define HAVE_ACOSHL 1
    #define HAVE_ATANHL 1
    #define HAVE_HYPOTL 1
    #define HAVE_ATAN2L 1
    #define HAVE_POWL 1
    #define HAVE_FMODL 1
    #define HAVE_MODFL 1
    #define HAVE_FREXPL 1
    #define HAVE_LDEXPL 1
    #define HAVE_EXP2L 1
    #define HAVE_LOG2L 1
    #define HAVE_COPYSIGNL 1
    #define HAVE_NEXTAFTERL 1
    #define HAVE_CBRTL 1
    #define HAVE_DECL_SIGNBIT
    #define HAVE_COMPLEX_H 1
    #define HAVE_CABS 1
    #define HAVE_CACOS 1
    #define HAVE_CACOSH 1
    #define HAVE_CARG 1
    #define HAVE_CASIN 1
    #define HAVE_CASINH 1
    #define HAVE_CATAN 1
    #define HAVE_CATANH 1
    #define HAVE_CCOS 1
    #define HAVE_CCOSH 1
    #define HAVE_CEXP 1
    #define HAVE_CIMAG 1
    #define HAVE_CLOG 1
    #define HAVE_CONJ 1
    #define HAVE_CPOW 1
    #define HAVE_CPROJ 1
    #define HAVE_CREAL 1
    #define HAVE_CSIN 1
    #define HAVE_CSINH 1
    #define HAVE_CSQRT 1
    #define HAVE_CTAN 1
    #define HAVE_CTANH 1
    #define HAVE_CABSF 1
    #define HAVE_CACOSF 1
    #define HAVE_CACOSHF 1
    #define HAVE_CARGF 1
    #define HAVE_CASINF 1
    #define HAVE_CASINHF 1
    #define HAVE_CATANF 1
    #define HAVE_CATANHF 1
    #define HAVE_CCOSF 1
    #define HAVE_CCOSHF 1
    #define HAVE_CEXPF 1
    #define HAVE_CIMAGF 1
    #define HAVE_CLOGF 1
    #define HAVE_CONJF 1
    #define HAVE_CPOWF 1
    #define HAVE_CPROJF 1
    #define HAVE_CREALF 1
    #define HAVE_CSINF 1
    #define HAVE_CSINHF 1
    #define HAVE_CSQRTF 1
    #define HAVE_CTANF 1
    #define HAVE_CTANHF 1
    #define HAVE_CABSL 1
    #define HAVE_CACOSL 1
    #define HAVE_CACOSHL 1
    #define HAVE_CARGL 1
    #define HAVE_CASINL 1
    #define HAVE_CASINHL 1
    #define HAVE_CATANL 1
    #define HAVE_CATANHL 1
    #define HAVE_CCOSL 1
    #define HAVE_CCOSHL 1
    #define HAVE_CEXPL 1
    #define HAVE_CIMAGL 1
    #define HAVE_CLOGL 1
    #define HAVE_CONJL 1
    #define HAVE_CPOWL 1
    #define HAVE_CPROJL 1
    #define HAVE_CREALL 1
    #define HAVE_CSINL 1
    #define HAVE_CSINHL 1
    #define HAVE_CSQRTL 1
    #define HAVE_CTANL 1
    #define HAVE_CTANHL 1
    #define NPY_RESTRICT restrict
    #define NPY_RELAXED_STRIDES_CHECKING 1
    #define HAVE_LDOUBLE_INTEL_EXTENDED_16_BYTES_LE 1
    #ifndef __cplusplus
    /* #undef inline */
    #endif

    #ifndef _NPY_NPY_CONFIG_H_
    #error config.h should never be included directly, include npy_config.h instead
    #endif

    EOF
    _configtest.c:1:5: warning: conflicting types for built-in function 'exp'
     int exp (void);
         ^~~
    File: build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h
    #define NPY_HAVE_ENDIAN_H 1
    #define NPY_SIZEOF_SHORT SIZEOF_SHORT
    #define NPY_SIZEOF_INT SIZEOF_INT
    #define NPY_SIZEOF_LONG SIZEOF_LONG
    #define NPY_SIZEOF_FLOAT 4
    #define NPY_SIZEOF_COMPLEX_FLOAT 8
    #define NPY_SIZEOF_DOUBLE 8
    #define NPY_SIZEOF_COMPLEX_DOUBLE 16
    #define NPY_SIZEOF_LONGDOUBLE 16
    #define NPY_SIZEOF_COMPLEX_LONGDOUBLE 32
    #define NPY_SIZEOF_PY_INTPTR_T 8
    #define NPY_SIZEOF_OFF_T 8
    #define NPY_SIZEOF_PY_LONG_LONG 8
    #define NPY_SIZEOF_LONGLONG 8
    #define NPY_NO_SMP 0
    #define NPY_HAVE_DECL_ISNAN
    #define NPY_HAVE_DECL_ISINF
    #define NPY_HAVE_DECL_ISFINITE
    #define NPY_HAVE_DECL_SIGNBIT
    #define NPY_USE_C99_COMPLEX 1
    #define NPY_HAVE_COMPLEX_DOUBLE 1
    #define NPY_HAVE_COMPLEX_FLOAT 1
    #define NPY_HAVE_COMPLEX_LONG_DOUBLE 1
    #define NPY_RELAXED_STRIDES_CHECKING 1
    #define NPY_USE_C99_FORMATS 1
    #define NPY_VISIBILITY_HIDDEN __attribute__((visibility("hidden")))
    #define NPY_ABI_VERSION 0x01000009
    #define NPY_API_VERSION 0x0000000C

    #ifndef __STDC_FORMAT_MACROS
    #define __STDC_FORMAT_MACROS 1
    #endif

    EOF
    warning: no previously-included files matching '*.pyo' found anywhere in distribution
    warning: no previously-included files matching '*.pyd' found anywhere in distribution
    warning: no previously-included files matching '*.swp' found anywhere in distribution
    warning: no previously-included files matching '*.bak' found anywhere in distribution
    warning: no previously-included files matching '*~' found anywhere in distribution
    In file included from numpy/core/src/npymath/ieee754.c.src:9:0:
    numpy/core/include/numpy/utils.h:17:24: error: pasting "__NPY_UNUSED_TAGGED" and "*" does not give a valid preprocessing token
     #define NPY_UNUSED(x) (__NPY_UNUSED_TAGGED ## x) __COMP_NPY_UNUSED
                            ^
    numpy/core/src/npymath/ieee754.c.src:802:38: note: in expansion of macro 'NPY_UNUSED'
     int npy_get_floatstatus_barrier(char NPY_UNUSED(*param))
                                          ^~~~~~~~~~
    numpy/core/src/npymath/ieee754.c.src:802:49: error: expected ')' before '*' token
     int npy_get_floatstatus_barrier(char NPY_UNUSED(*param))
                                                     ^
    numpy/core/include/numpy/utils.h:17:47: note: in definition of macro 'NPY_UNUSED'
     #define NPY_UNUSED(x) (__NPY_UNUSED_TAGGED ## x) __COMP_NPY_UNUSED
                                                   ^
    In file included from numpy/core/src/npymath/ieee754.c.src:9:0:
    numpy/core/include/numpy/utils.h:17:24: error: pasting "__NPY_UNUSED_TAGGED" and "*" does not give a valid preprocessing token
     #define NPY_UNUSED(x) (__NPY_UNUSED_TAGGED ## x) __COMP_NPY_UNUSED
                            ^
    numpy/core/src/npymath/ieee754.c.src:802:38: note: in expansion of macro 'NPY_UNUSED'
     int npy_get_floatstatus_barrier(char NPY_UNUSED(*param))
                                          ^~~~~~~~~~
    numpy/core/src/npymath/ieee754.c.src:802:49: error: expected ')' before '*' token
     int npy_get_floatstatus_barrier(char NPY_UNUSED(*param))
                                                     ^
    numpy/core/include/numpy/utils.h:17:47: note: in definition of macro 'NPY_UNUSED'
     #define NPY_UNUSED(x) (__NPY_UNUSED_TAGGED ## x) __COMP_NPY_UNUSED
                                                   ^
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-fUc8dq/pandas/setup.py", line 631, in <module>
        **setuptools_kwargs)
      File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
        _setup_distribution = dist = klass(attrs)
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 317, in __init__
        self.fetch_build_eggs(attrs['setup_requires'])
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 372, in fetch_build_eggs
        replace_conflicting=True,
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 846, in resolve
        dist = best[req.key] = env.best_match(req, ws, installer)
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1118, in best_match
        return self.obtain(req, installer)
      File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1130, in obtain
        return installer(requirement)
      File "/usr/lib/python2.7/site-packages/setuptools/dist.py", line 440, in fetch_build_egg
        return cmd.easy_install(req)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 674, in easy_install
        return self.install_item(spec, dist.location, tmpdir, deps)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 700, in install_item
        dists = self.install_eggs(spec, download, tmpdir)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 881, in install_eggs
        return self.build_and_install(setup_script, setup_base)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1120, in build_and_install
        self.run_setup(setup_script, setup_base, args)
      File "/usr/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1108, in run_setup
        raise DistutilsError("Setup script exited with %s" % (v.args[0],))
    distutils.errors.DistutilsError: Setup script exited with error: Command "gcc -fno-strict-aliasing -Os -fomit-frame-pointer -g -DNDEBUG -Os -fomit-frame-pointer -g -DTHREAD_STACK_SIZE=0x100000 -fPIC -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.o -MMD -MF build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.o.d" failed with exit status 1

    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-fUc8dq/pandas/
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
The command '/bin/sh -c pip install --requirement requirements.txt' returned a non-zero code: 1
make: *** [container_image] Error 1
@gsunner
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gsunner commented Jun 12, 2018

@koverholt After the example "sklearn_iris_docker" we updated our wrapping process to use s2i (source to image).
This is reflected in the example "sklearn_iris".

Could you try this example and let us know if you get any issues.

https://github.com/SeldonIO/seldon-core/blob/master/examples/models/sklearn_iris/sklearn_iris.ipynb

@koverholt
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Thanks for the info. I did previously run the s2i-based examples, including sklearn_iris, but I was hoping to instead use the Dockerfile-based approach directly with the Python wrapper for flexibility.

Does the s2i-based approach mean that the Docker wrapper application/approach is going to be deprecated? I was hoping they were both going to be supported per the documentation at https://github.com/SeldonIO/seldon-core/blob/master/docs/wrappers/readme.md.

@ukclivecox
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We intend to support the core python wrappers. The s2i integration uses them under the hood.

@ukclivecox
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Also note, s2i has an experimental --as-dockerfile option.

@ukclivecox
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Please reopen if still relevant.

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