diff --git a/.github/workflows/frontend_push.yml b/.github/workflows/frontend_push.yml index 869b5a5..333e4b8 100644 --- a/.github/workflows/frontend_push.yml +++ b/.github/workflows/frontend_push.yml @@ -13,6 +13,7 @@ env: ECS_SERVICE: medical_assistant_frontend ECR_REPOSITORY: 891377268337.dkr.ecr.us-east-1.amazonaws.com/medical_assistant_frontend API_KEY: ${{secrets.API_KEY}} + VITE_BACKEND_URL: http://lb-medical-assistant-503996398.us-east-1.elb.amazonaws.com:8000/ jobs: build_image_frontend: @@ -39,6 +40,8 @@ jobs: IMAGE_TAG: lastest run: | + echo VITE_BACKEND_URL=${{env.VITE_BACKEND_URL}} >> ./frontend/.env + docker build -t $ECR_REPOSITORY:$IMAGE_TAG ./frontend docker push $ECR_REPOSITORY:$IMAGE_TAG diff --git a/backend/api/v1/post_suggestions.py b/backend/api/v1/post_suggestions.py index 774663d..9a731dc 100644 --- a/backend/api/v1/post_suggestions.py +++ b/backend/api/v1/post_suggestions.py @@ -4,7 +4,11 @@ from controllers.v1.history_clinic import extract_text_from_pdf from controllers.v1.MRI_image import predict_tumor_by_img -from controllers.v1.validate_files import processing_file_type_based +from controllers.v1.validate_files import ( + check_files, + type_based_checking, +) + from dotenv import load_dotenv from model import GenerativeModel @@ -34,24 +38,22 @@ @router.post( - "/files", + "/uploadfiles", status_code=200, - dependencies=[ - Depends(processing_file_type_based), - ], response_model=dict[str, str], + dependencies=[Depends(check_files)], ) async def predict_tumor( files: list[UploadFile], ): - img = None - pdf = None - - for file in files: - if file.filename.split(".")[0] == "brain_mri": - img = file - elif file.filename.split(".")[0] == "clinical_history": - pdf = file + # Check the type of the files pydantic model based + dict_files = { + file.filename.split(".")[1]: type_based_checking(file) for file in files + } + + # Get the image and the pdf + img = dict_files.get("jpeg") or dict_files.get("png") or dict_files.get("jpg") + pdf = dict_files.get("pdf") # Call the function to predict the tumor classification = await predict_tumor_by_img(img=img) diff --git a/backend/controllers/v1/validate_files.py b/backend/controllers/v1/validate_files.py index 33b7c51..f4acdd4 100644 --- a/backend/controllers/v1/validate_files.py +++ b/backend/controllers/v1/validate_files.py @@ -1,7 +1,6 @@ # Check if the number of files is correct from fastapi import HTTPException, UploadFile from pydantic import ValidationError -import os from schemas.ClinicHistoryFileUploaded import ClinicHistoryFileUploaded from schemas.MRIFileUploaded import MRIFileUploaded @@ -11,6 +10,17 @@ def validate_quantity_files(files: list): return len(files) != 2 +def check_files(files: list[UploadFile]): + # Check if each file has an extension + if not all(["." in file.filename for file in files]): + raise HTTPException(status_code=400, detail="File without extension.") + + if validate_quantity_files(files): + raise HTTPException( + status_code=400, detail="The number of files is not correct." + ) + + def is_type_PDF(type_file): return type_file == "application/pdf" @@ -19,40 +29,25 @@ def is_type_image(type_file): return type_file in ["image/jpeg", "image/png", "image/jpg"] -def processing_file_type_based(files: list[UploadFile]): - if validate_quantity_files(files): +def type_based_checking(file: MRIFileUploaded | ClinicHistoryFileUploaded): + # Check the model type based on defined schema + if is_type_image(file.content_type): + try: + MRIFileUploaded(file=file, type=file.content_type, size=file.size) + + except ValidationError as e: + raise HTTPException(status_code=400, detail=str(e).splitlines()[2]) + + elif is_type_PDF(file.content_type): + try: + ClinicHistoryFileUploaded(file=file, type=file.content_type, size=file.size) + + except ValidationError as e: + raise HTTPException(status_code=400, detail=str(e).splitlines()[2]) + + else: raise HTTPException( - status_code=400, detail="The number of files is not correct." + status_code=400, + detail=f"The type of the file {file.filename} is not supported.", ) - - img = None - pdf = None - - for file in files: - # Assign the file to the corresponding variable - if is_type_image(file.content_type): - try: - name = os.path.splitext(file.filename)[0] - img = MRIFileUploaded( - file=file, name=name, type=file.content_type, size=file.size - ) - - except ValidationError as e: - raise HTTPException(status_code=400, detail=str(e).splitlines()[2]) - - elif is_type_PDF(file.content_type): - try: - name = os.path.splitext(file.filename)[0] - pdf = ClinicHistoryFileUploaded( - file=file, name=name, type=file.content_type, size=file.size - ) - - except ValidationError as e: - raise HTTPException(status_code=400, detail=str(e).splitlines()[2]) - - else: - raise HTTPException( - status_code=400, - detail=f"The type of the file {file.filename} is not supported.", - ) - return [img, pdf] + return file diff --git a/backend/schemas/ClinicHistoryFileUploaded.py b/backend/schemas/ClinicHistoryFileUploaded.py index 600d75b..5fdd6a8 100644 --- a/backend/schemas/ClinicHistoryFileUploaded.py +++ b/backend/schemas/ClinicHistoryFileUploaded.py @@ -5,7 +5,6 @@ class ClinicHistoryFileUploaded(BaseModel): - name: Literal["clinical_history"] file: UploadFile type: Literal["application/pdf"] size: Annotated[int, field_validator("size")] diff --git a/backend/schemas/MRIFileUploaded.py b/backend/schemas/MRIFileUploaded.py index 520a554..3e9b69e 100644 --- a/backend/schemas/MRIFileUploaded.py +++ b/backend/schemas/MRIFileUploaded.py @@ -5,7 +5,6 @@ class MRIFileUploaded(BaseModel): - name: Literal["brain_mri"] file: UploadFile type: Literal["image/jpeg", "image/png", "image/jpg"] size: int diff --git a/frontend/.example.env b/frontend/.example.env new file mode 100644 index 0000000..10d15de --- /dev/null +++ b/frontend/.example.env @@ -0,0 +1 @@ +VITE_BACKEND_URL="insert backend url" \ No newline at end of file diff --git a/frontend/package.json b/frontend/package.json index 4516e9f..f36a66a 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -14,6 +14,7 @@ "react-dom": "^18.2.0" }, "devDependencies": { + "@tailwindcss/typography": "^0.5.13", "@types/react": "^18.2.66", "@types/react-dom": "^18.2.22", "@vitejs/plugin-react": "^4.2.1", @@ -25,6 +26,7 @@ "eslint-plugin-react-refresh": "^0.4.6", "postcss": "^8.4.38", "prettier": "^3.2.5", + "react-markdown": "^9.0.1", "tailwindcss": "^3.4.3", "vite": "^5.2.0" } diff --git a/frontend/pnpm-lock.yaml b/frontend/pnpm-lock.yaml index ef7a302..b1dc66c 100644 --- a/frontend/pnpm-lock.yaml +++ b/frontend/pnpm-lock.yaml @@ -13,6 +13,9 @@ dependencies: version: 18.2.0(react@18.2.0) devDependencies: + '@tailwindcss/typography': + specifier: ^0.5.13 + version: 0.5.13(tailwindcss@3.4.3) '@types/react': specifier: ^18.2.66 version: 18.2.79 @@ -46,6 +49,9 @@ devDependencies: prettier: specifier: ^3.2.5 version: 3.2.5 + react-markdown: + specifier: ^9.0.1 + version: 9.0.1(@types/react@18.2.79)(react@18.2.0) tailwindcss: specifier: ^3.4.3 version: 3.4.3 @@ -752,6 +758,18 @@ packages: dev: true optional: true + /@tailwindcss/typography@0.5.13(tailwindcss@3.4.3): + resolution: {integrity: sha512-ADGcJ8dX21dVVHIwTRgzrcunY6YY9uSlAHHGVKvkA+vLc5qLwEszvKts40lx7z0qc4clpjclwLeK5rVCV2P/uw==} + peerDependencies: + tailwindcss: '>=3.0.0 || insiders' + dependencies: + lodash.castarray: 4.4.0 + lodash.isplainobject: 4.0.6 + lodash.merge: 4.6.2 + postcss-selector-parser: 6.0.10 + tailwindcss: 3.4.3 + dev: true + /@types/babel__core@7.20.5: resolution: {integrity: sha512-qoQprZvz5wQFJwMDqeseRXWv3rqMvhgpbXFfVyWhbx9X47POIA6i/+dXefEmZKoAgOaTdaIgNSMqMIU61yRyzA==} dependencies: @@ -781,10 +799,38 @@ packages: '@babel/types': 7.24.0 dev: true + /@types/debug@4.1.12: + resolution: {integrity: sha512-vIChWdVG3LG1SMxEvI/AK+FWJthlrqlTu7fbrlywTkkaONwk/UAGaULXRlf8vkzFBLVm0zkMdCquhL5aOjhXPQ==} + dependencies: + '@types/ms': 0.7.34 + dev: true + + /@types/estree-jsx@1.0.5: + 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true @@ -1568,11 +1667,19 @@ packages: engines: {node: '>=4.0'} dev: true + /estree-util-is-identifier-name@3.0.0: + resolution: {integrity: sha512-hFtqIDZTIUZ9BXLb8y4pYGyk6+wekIivNVTcmvk8NoOh+VeRn5y6cEHzbURrWbfp1fIqdVipilzj+lfaadNZmg==} + dev: true + /esutils@2.0.3: resolution: {integrity: sha512-kVscqXk4OCp68SZ0dkgEKVi6/8ij300KBWTJq32P/dYeWTSwK41WyTxalN1eRmA5Z9UU/LX9D7FWSmV9SAYx6g==} engines: {node: '>=0.10.0'} dev: true + /extend@3.0.2: + resolution: {integrity: sha512-fjquC59cD7CyW6urNXK0FBufkZcoiGG80wTuPujX590cB5Ttln20E2UB4S/WARVqhXffZl2LNgS+gQdPIIim/g==} + dev: true + /fast-deep-equal@3.1.3: resolution: {integrity: sha512-f3qQ9oQy9j2AhBe/H9VC91wLmKBCCU/gDOnKNAYG5hswO7BLKj09Hc5HYNz9cGI++xlpDCIgDaitVs03ATR84Q==} dev: true @@ -1824,6 +1931,38 @@ packages: function-bind: 1.1.2 dev: true + /hast-util-to-jsx-runtime@2.3.0: + resolution: {integrity: sha512-H/y0+IWPdsLLS738P8tDnrQ8Z+dj12zQQ6WC11TIM21C8WFVoIxcqWXf2H3hiTVZjF1AWqoimGwrTWecWrnmRQ==} + dependencies: + '@types/estree': 1.0.5 + '@types/hast': 3.0.4 + '@types/unist': 3.0.2 + comma-separated-tokens: 2.0.3 + devlop: 1.1.0 + estree-util-is-identifier-name: 3.0.0 + hast-util-whitespace: 3.0.0 + mdast-util-mdx-expression: 2.0.0 + mdast-util-mdx-jsx: 3.1.2 + mdast-util-mdxjs-esm: 2.0.1 + property-information: 6.5.0 + space-separated-tokens: 2.0.2 + style-to-object: 1.0.6 + unist-util-position: 5.0.0 + vfile-message: 4.0.2 + transitivePeerDependencies: + - supports-color + dev: true + + /hast-util-whitespace@3.0.0: + resolution: {integrity: sha512-88JUN06ipLwsnv+dVn+OIYOvAuvBMy/Qoi6O7mQHxdPXpjy+Cd6xRkWwux7DKO+4sYILtLBRIKgsdpS2gQc7qw==} + dependencies: + '@types/hast': 3.0.4 + dev: true + + /html-url-attributes@3.0.0: + resolution: {integrity: sha512-/sXbVCWayk6GDVg3ctOX6nxaVj7So40FcFAnWlWGNAB1LpYKcV5Cd10APjPjW80O7zYW2MsjBV4zZ7IZO5fVow==} + dev: true + /ignore@5.3.1: resolution: {integrity: sha512-5Fytz/IraMjqpwfd34ke28PTVMjZjJG2MPn5t7OE4eUCUNf8BAa7b5WUS9/Qvr6mwOQS7Mk6vdsMno5he+T8Xw==} engines: {node: '>= 4'} @@ 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/read-cache@1.0.0: resolution: {integrity: sha512-Owdv/Ft7IjOgm/i0xvNDZ1LrRANRfew4b2prF3OWMQLxLfu3bS8FVhCsrSCMK4lR56Y9ya+AThoTpDCTxCmpRA==} @@ -2555,6 +3060,27 @@ packages: set-function-name: 2.0.2 dev: true + /remark-parse@11.0.0: + resolution: {integrity: sha512-FCxlKLNGknS5ba/1lmpYijMUzX2esxW5xQqjWxw2eHFfS2MSdaHVINFmhjo+qN1WhZhNimq0dZATN9pH0IDrpA==} + dependencies: + '@types/mdast': 4.0.3 + mdast-util-from-markdown: 2.0.0 + micromark-util-types: 2.0.0 + unified: 11.0.4 + transitivePeerDependencies: + - supports-color + dev: true + + /remark-rehype@11.1.0: + resolution: {integrity: sha512-z3tJrAs2kIs1AqIIy6pzHmAHlF1hWQ+OdY4/hv+Wxe35EhyLKcajL33iUEn3ScxtFox9nUvRufR/Zre8Q08H/g==} + dependencies: + '@types/hast': 3.0.4 + '@types/mdast': 4.0.3 + mdast-util-to-hast: 13.1.0 + unified: 11.0.4 + vfile: 6.0.1 + dev: true + /resolve-from@4.0.0: resolution: {integrity: sha512-pb/MYmXstAkysRFx8piNI1tGFNQIFA3vkE3Gq4EuA1dF6gHp/+vgZqsCGJapvy8N3Q+4o7FwvquPJcnZ7RYy4g==} engines: {node: '>=4'} @@ -2706,6 +3232,10 @@ packages: engines: {node: '>=0.10.0'} dev: true + /space-separated-tokens@2.0.2: + resolution: {integrity: sha512-PEGlAwrG8yXGXRjW32fGbg66JAlOAwbObuqVoJpv/mRgoWDQfgH1wDPvtzWyUSNAXBGSk8h755YDbbcEy3SH2Q==} + dev: true + /string-width@4.2.3: resolution: {integrity: sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==} engines: {node: '>=8'} @@ -2769,6 +3299,13 @@ packages: es-object-atoms: 1.0.0 dev: true + /stringify-entities@4.0.4: + resolution: {integrity: sha512-IwfBptatlO+QCJUo19AqvrPNqlVMpW9YEL2LIVY+Rpv2qsjCGxaDLNRgeGsQWJhfItebuJhsGSLjaBbNSQ+ieg==} + dependencies: + character-entities-html4: 2.1.0 + character-entities-legacy: 3.0.0 + dev: true + /strip-ansi@6.0.1: resolution: {integrity: sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==} engines: {node: '>=8'} @@ -2788,6 +3325,12 @@ packages: engines: {node: '>=8'} dev: true + /style-to-object@1.0.6: + resolution: {integrity: sha512-khxq+Qm3xEyZfKd/y9L3oIWQimxuc4STrQKtQn8aSDRHb8mFgpukgX1hdzfrMEW6JCjyJ8p89x+IUMVnCBI1PA==} + dependencies: + inline-style-parser: 0.2.3 + dev: true + /sucrase@3.35.0: resolution: {integrity: sha512-8EbVDiu9iN/nESwxeSxDKe0dunta1GOlHufmSSXxMD2z2/tMZpDMpvXQGsc+ajGo8y2uYUmixaSRUc/QPoQ0GA==} engines: {node: '>=16 || 14 >=14.17'} @@ -2881,6 +3424,14 @@ packages: is-number: 7.0.0 dev: true + /trim-lines@3.0.1: + resolution: {integrity: sha512-kRj8B+YHZCc9kQYdWfJB2/oUl9rA99qbowYYBtr4ui4mZyAQ2JpvVBd/6U2YloATfqBhBTSMhTpgBHtU0Mf3Rg==} + dev: true + + /trough@2.2.0: + resolution: {integrity: sha512-tmMpK00BjZiUyVyvrBK7knerNgmgvcV/KLVyuma/SC+TQN167GrMRciANTz09+k3zW8L8t60jWO1GpfkZdjTaw==} + dev: true + /ts-interface-checker@0.1.13: resolution: {integrity: sha512-Y/arvbn+rrz3JCKl9C4kVNfTfSm2/mEp5FSz5EsZSANGPSlQrpRI5M4PKF+mJnE52jOO90PnPSc3Ur3bTQw0gA==} dev: true @@ -2950,6 +3501,58 @@ packages: which-boxed-primitive: 1.0.2 dev: true + /unified@11.0.4: + resolution: {integrity: sha512-apMPnyLjAX+ty4OrNap7yumyVAMlKx5IWU2wlzzUdYJO9A8f1p9m/gywF/GM2ZDFcjQPrx59Mc90KwmxsoklxQ==} + dependencies: + '@types/unist': 3.0.2 + bail: 2.0.2 + devlop: 1.1.0 + extend: 3.0.2 + is-plain-obj: 4.1.0 + trough: 2.2.0 + vfile: 6.0.1 + dev: true + + /unist-util-is@6.0.0: + resolution: {integrity: sha512-2qCTHimwdxLfz+YzdGfkqNlH0tLi9xjTnHddPmJwtIG9MGsdbutfTc4P+haPD7l7Cjxf/WZj+we5qfVPvvxfYw==} + dependencies: + '@types/unist': 3.0.2 + dev: true + + /unist-util-position@5.0.0: + resolution: {integrity: sha512-fucsC7HjXvkB5R3kTCO7kUjRdrS0BJt3M/FPxmHMBOm8JQi2BsHAHFsy27E0EolP8rp0NzXsJ+jNPyDWvOJZPA==} + dependencies: + '@types/unist': 3.0.2 + dev: true + + /unist-util-remove-position@5.0.0: + resolution: {integrity: sha512-Hp5Kh3wLxv0PHj9m2yZhhLt58KzPtEYKQQ4yxfYFEO7EvHwzyDYnduhHnY1mDxoqr7VUwVuHXk9RXKIiYS1N8Q==} + dependencies: + '@types/unist': 3.0.2 + unist-util-visit: 5.0.0 + dev: true + + /unist-util-stringify-position@4.0.0: + resolution: {integrity: sha512-0ASV06AAoKCDkS2+xw5RXJywruurpbC4JZSm7nr7MOt1ojAzvyyaO+UxZf18j8FCF6kmzCZKcAgN/yu2gm2XgQ==} + dependencies: + '@types/unist': 3.0.2 + dev: true + + /unist-util-visit-parents@6.0.1: + resolution: {integrity: sha512-L/PqWzfTP9lzzEa6CKs0k2nARxTdZduw3zyh8d2NVBnsyvHjSX4TWse388YrrQKbvI8w20fGjGlhgT96WwKykw==} + dependencies: + '@types/unist': 3.0.2 + unist-util-is: 6.0.0 + dev: true + + /unist-util-visit@5.0.0: + resolution: {integrity: sha512-MR04uvD+07cwl/yhVuVWAtw+3GOR/knlL55Nd/wAdblk27GCVt3lqpTivy/tkJcZoNPzTwS1Y+KMojlLDhoTzg==} + dependencies: + '@types/unist': 3.0.2 + unist-util-is: 6.0.0 + unist-util-visit-parents: 6.0.1 + dev: true + /update-browserslist-db@1.0.13(browserslist@4.23.0): resolution: {integrity: sha512-xebP81SNcPuNpPP3uzeW1NYXxI3rxyJzF3pD6sH4jE7o/IX+WtSpwnVU+qIsDPyk0d3hmFQ7mjqc6AtV604hbg==} hasBin: true @@ -2971,6 +3574,21 @@ packages: resolution: {integrity: sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==} dev: true + /vfile-message@4.0.2: + resolution: {integrity: sha512-jRDZ1IMLttGj41KcZvlrYAaI3CfqpLpfpf+Mfig13viT6NKvRzWZ+lXz0Y5D60w6uJIBAOGq9mSHf0gktF0duw==} + dependencies: + '@types/unist': 3.0.2 + unist-util-stringify-position: 4.0.0 + dev: true + + /vfile@6.0.1: + resolution: {integrity: sha512-1bYqc7pt6NIADBJ98UiG0Bn/CHIVOoZ/IyEkqIruLg0mE1BKzkOXY2D6CSqQIcKqgadppE5lrxgWXJmXd7zZJw==} + dependencies: + '@types/unist': 3.0.2 + unist-util-stringify-position: 4.0.0 + vfile-message: 4.0.2 + dev: true + /vite@5.2.10: resolution: {integrity: sha512-PAzgUZbP7msvQvqdSD+ErD5qGnSFiGOoWmV5yAKUEI0kdhjbH6nMWVyZQC/hSc4aXwc0oJ9aEdIiF9Oje0JFCw==} engines: {node: ^18.0.0 || >=20.0.0} @@ -3099,3 +3717,7 @@ packages: resolution: {integrity: sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==} engines: {node: '>=10'} dev: true + + /zwitch@2.0.4: + resolution: {integrity: sha512-bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A==} + dev: true diff --git a/frontend/src/App.jsx b/frontend/src/App.jsx index 0ba20fe..f5b1136 100644 --- a/frontend/src/App.jsx +++ b/frontend/src/App.jsx @@ -8,16 +8,7 @@ import Notification from "./components/Notification"; function App() { const [healthData, setHealthData] = useState(null); const [notification, setNotification] = useState(null); - - // Callback to update the state after uploading the file - const handleFileUpload = async (formData) => { - try { - const response = await uploadFiles(formData); - setHealthData(response); - } catch (error) { - console.error("Error during file upload"); - } - }; + const [isLoading, setIsLoading] = useState(false); const notify = (message, type = "success") => { setNotification({ message, type }); @@ -26,28 +17,36 @@ function App() { }, 3000); }; - const fakeHealth = { - isTumorPresent: true, - recommendations: `For optimal health, nourish yourself with a balanced diet, get regular exercise, prioritize quality sleep, - and manage stress. Listen to your body's cues, schedule preventive checkups, and incorporate healthy habits into your daily routine. - These small steps pave the way for a life of well-being.`, + // Callback to update the state after uploading the file + const handleFileUpload = async (formData) => { + setIsLoading(true); + try { + const response = await uploadFiles(formData); + setHealthData(response); + } catch (error) { + console.error("Error:", error); + notify(error.message, "error"); + } finally { + setIsLoading(false); + } }; // The UploadFileWrapper component is used to render the form and the model's response data return (
-

Brain Tumor Checker

+

+ Asistente de diagnóstico médico +

-
+
- {fakeHealth ? ( - - ) : null} +
+
diff --git a/frontend/src/components/Footer.jsx b/frontend/src/components/Footer.jsx index 3b8c923..9fa9eb4 100644 --- a/frontend/src/components/Footer.jsx +++ b/frontend/src/components/Footer.jsx @@ -4,76 +4,78 @@ function Footer() { return (