From 52270277caea58590201eb56485f958ccfcb7f53 Mon Sep 17 00:00:00 2001 From: Senthilkumar Panneerselvam Date: Wed, 5 Apr 2023 11:22:34 +0200 Subject: [PATCH 1/3] Available data march --- data/available_datasets.json | 119 ++++++++++++++++++++++++++++++++++- 1 file changed, 118 insertions(+), 1 deletion(-) diff --git a/data/available_datasets.json b/data/available_datasets.json index 6b7c48b54..071b1da0f 100644 --- a/data/available_datasets.json +++ b/data/available_datasets.json @@ -1,6 +1,123 @@ { - "last_updated": "2023-03-03", + "last_updated": "2023-04-05", "datasets": [ + { + "doi": "10.2807/1560-7917.ES.2023.28.11.2200673", + "available_items": [ + { + "type": "data", + "repo_name": "ENA", + "accession_number": "PRJEB58691", + "description": "Legionella isolates sequencing data", + "data_type": [ + "Genomics & transcriptomics data" + ], + "data_url": "https://www.ebi.ac.uk/ena/browser/view/PRJEB58691" + } + ], + "title": "Tap water as the source of a Legionnaires’ disease outbreak spread to several residential buildings and one hospital, Finland, 2020 to 2021", + "issue": "11", + "volume": "28", + "publisher": "European Centre for Disease Control and Prevention (ECDC)", + "published": "2023-03-16", + "author": [ + "Mentula S.", + "Kääriäinen S.", + "Jaakola S.", + "Niittynen M.", + "Airaksinen P." + ] + }, + { + "doi": "10.1016/j.tbench.2023.100088", + "available_items": [ + { + "type": "data", + "repo_name": "Mendeley Data", + "accession_number": "", + "description": "COVID19, Pneumonia and Normal Chest X-ray PA Dataset", + "data_type": [ + "Public health data" + ], + "data_url": "https://data.mendeley.com/datasets/mxc6vb7svm" + }, + { + "type": "code", + "repo_name": "GitHub", + "accession_number": "", + "description": "Scripts used in this project to analyse the datasets", + "data_type": [ + "Public health data" + ], + "data_url": "https://github.com/Asraf047/COVID19-CNN-RNN" + } + ], + "title": "Diagnosis of COVID-19 from X-rays using combined CNN-RNN architecture with transfer learning", + "issue": "4", + "volume": "2", + "publisher": "Elsevier BV", + "published": "2023-03-27", + "author": [ + "Islam M. M.", + "Islam M. Z.", + "Asraf A.", + "Al-Rakhami M. S.", + "Ding W." + ] + }, + { + "doi": "10.1371/journal.pgph.0001110", + "available_items": [ + { + "type": "data", + "repo_name": "FigShare", + "accession_number": "", + "description": "Fully anonymised data from two cross-sectional surveys", + "data_type": [ + "Public health data", + "Other data" + ], + "data_url": "https://figshare.com/articles/dataset/Community_survey_data_from_the_DClare_Project_Faridpur_District_Bangladesh/19337831/1" + } + ], + "title": "Changes in non-communicable diseases, diet and exercise in a rural Bangladesh setting before and after the first wave of COVID-19", + "issue": "9", + "volume": "2", + "publisher": "Public Library of Science (PLoS)", + "published": "2022-09-30", + "author": [ + "King C.", + "Shaha S. K.", + "Morrison J.", + "Ahmed N.", + "Kuddus A." + ] + }, + { + "doi": "10.1371/journal.pgph.0001204 ", + "available_items": [ + { + "type": "data", + "repo_name": "Zenodo", + "accession_number": "", + "description": "Municipal-level vaccination data compiled from several publicly available data sources", + "data_type": [ + "Public health data" + ], + "data_url": "https://zenodo.org/record/6983689#YvVPOHZBw2z" + } + ], + "title": "Variations in vaccination uptake: COVID-19 vaccination rates in Swedish municipalities", + "issue": "10", + "volume": "2", + "publisher": "Public Library of Science (PLoS)", + "published": "2022-10-20", + "author": [ + "Larsson E. C.", + "Wittberg E.", + "Lundåsen S. W." + ] + }, { "doi": "10.3390/ijerph20043642", "available_items": [ From a18131068c34144cdf0835d39d78a6e517b90022 Mon Sep 17 00:00:00 2001 From: LianeHughes <68756672+LianeHughes@users.noreply.github.com> Date: Thu, 6 Apr 2023 06:51:38 +0200 Subject: [PATCH 2/3] Removed non COVID data data and where data link not working --- data/available_datasets.json | 58 ++---------------------------------- 1 file changed, 3 insertions(+), 55 deletions(-) diff --git a/data/available_datasets.json b/data/available_datasets.json index 071b1da0f..bc1371d9f 100644 --- a/data/available_datasets.json +++ b/data/available_datasets.json @@ -1,33 +1,6 @@ { "last_updated": "2023-04-05", "datasets": [ - { - "doi": "10.2807/1560-7917.ES.2023.28.11.2200673", - "available_items": [ - { - "type": "data", - "repo_name": "ENA", - "accession_number": "PRJEB58691", - "description": "Legionella isolates sequencing data", - "data_type": [ - "Genomics & transcriptomics data" - ], - "data_url": "https://www.ebi.ac.uk/ena/browser/view/PRJEB58691" - } - ], - "title": "Tap water as the source of a Legionnaires’ disease outbreak spread to several residential buildings and one hospital, Finland, 2020 to 2021", - "issue": "11", - "volume": "28", - "publisher": "European Centre for Disease Control and Prevention (ECDC)", - "published": "2023-03-16", - "author": [ - "Mentula S.", - "Kääriäinen S.", - "Jaakola S.", - "Niittynen M.", - "Airaksinen P." - ] - }, { "doi": "10.1016/j.tbench.2023.100088", "available_items": [ @@ -35,9 +8,9 @@ "type": "data", "repo_name": "Mendeley Data", "accession_number": "", - "description": "COVID19, Pneumonia and Normal Chest X-ray PA Dataset", + "description": "COVID19, Pneumonia, and Normal Chest X-ray Posteroanterior Dataset", "data_type": [ - "Public health data" + "Health data" ], "data_url": "https://data.mendeley.com/datasets/mxc6vb7svm" }, @@ -47,7 +20,7 @@ "accession_number": "", "description": "Scripts used in this project to analyse the datasets", "data_type": [ - "Public health data" + "Health data" ], "data_url": "https://github.com/Asraf047/COVID19-CNN-RNN" } @@ -93,31 +66,6 @@ "Kuddus A." ] }, - { - "doi": "10.1371/journal.pgph.0001204 ", - "available_items": [ - { - "type": "data", - "repo_name": "Zenodo", - "accession_number": "", - "description": "Municipal-level vaccination data compiled from several publicly available data sources", - "data_type": [ - "Public health data" - ], - "data_url": "https://zenodo.org/record/6983689#YvVPOHZBw2z" - } - ], - "title": "Variations in vaccination uptake: COVID-19 vaccination rates in Swedish municipalities", - "issue": "10", - "volume": "2", - "publisher": "Public Library of Science (PLoS)", - "published": "2022-10-20", - "author": [ - "Larsson E. C.", - "Wittberg E.", - "Lundåsen S. W." - ] - }, { "doi": "10.3390/ijerph20043642", "available_items": [ From 2a6e0ff57fb7e902239c39de467c1d839992a3fc Mon Sep 17 00:00:00 2001 From: LianeHughes <68756672+LianeHughes@users.noreply.github.com> Date: Thu, 6 Apr 2023 07:44:03 +0200 Subject: [PATCH 3/3] add back in vaccines data --- data/available_datasets.json | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/data/available_datasets.json b/data/available_datasets.json index bc1371d9f..65e98f20d 100644 --- a/data/available_datasets.json +++ b/data/available_datasets.json @@ -66,6 +66,31 @@ "Kuddus A." ] }, + { + "doi": "10.1371/journal.pgph.0001204", + "available_items": [ + { + "type": "data", + "repo_name": "Zenodo", + "accession_number": "", + "description": "Municipal-level vaccination data compiled from several publicly available data sources", + "data_type": [ + "Public health data" + ], + "data_url": "https://zenodo.org/record/6983689#YvVPOHZBw2z" + } + ], + "title": "Variations in vaccination uptake: COVID-19 vaccination rates in Swedish municipalities", + "issue": "10", + "volume": "2", + "publisher": "Public Library of Science (PLoS)", + "published": "2022-10-20", + "author": [ + "Larsson E. C.", + "Wittberg E.", + "Lundåsen S. W." + ] + }, { "doi": "10.3390/ijerph20043642", "available_items": [