diff --git a/content/english/data-management.md b/content/english/data-management.md index 3118e7924..aea62a808 100644 --- a/content/english/data-management.md +++ b/content/english/data-management.md @@ -1,10 +1,6 @@ --- title: Data management toc: True -menu: - data_menu: - identifier: datamanagement - name: Data management aliases: - /support_services/data_management/ - /sv/support_services/data_management/ diff --git a/content/english/datasets/_index.md b/content/english/datasets/_index.md index c09eb4390..c46ab982e 100644 --- a/content/english/datasets/_index.md +++ b/content/english/datasets/_index.md @@ -5,9 +5,6 @@ menu: name: Available datasets identifier: available_data post: Data available from research groups in Sweden. See available data for all data types - data_menu: - identifier: available_datasets - name: Available datasets aliases: - /sv/data_types/ - /data_types/ diff --git a/content/english/datasets/all.md b/content/english/datasets/all.md index ce0d05585..12945474e 100644 --- a/content/english/datasets/all.md +++ b/content/english/datasets/all.md @@ -1,10 +1,9 @@ --- title: All data types menu: - data_menu: + datasets_menu: identifier: all name: All data types - parent: available_datasets aliases: - /sv/data_types/all/data/ - /data_types/all/data/ diff --git a/content/english/datasets/biochemistry.md b/content/english/datasets/biochemistry.md index 6e054aec1..267d413ab 100644 --- a/content/english/datasets/biochemistry.md +++ b/content/english/datasets/biochemistry.md @@ -1,10 +1,9 @@ --- title: Biochemistry data menu: - data_menu: + datasets_menu: identifier: biochemistry name: Biochemistry data - parent: available_datasets aliases: - /data_types/compound_and_target_data/ - /sv/data_types/compound_and_target_data/ diff --git a/content/english/datasets/drug-discovery.md b/content/english/datasets/drug-discovery.md index ff322d8e8..656722d8d 100644 --- a/content/english/datasets/drug-discovery.md +++ b/content/english/datasets/drug-discovery.md @@ -1,10 +1,9 @@ --- title: Drug discovery data menu: - data_menu: + datasets_menu: identifier: drug_discovery name: Drug discovery data - parent: available_datasets aliases: - /sv/data_types/drug_discovery/data/ - /data_types/drug_discovery/data/ diff --git a/content/english/datasets/genomics-transcriptomics.md b/content/english/datasets/genomics-transcriptomics.md index 9fa0bc5cb..1a2b32823 100644 --- a/content/english/datasets/genomics-transcriptomics.md +++ b/content/english/datasets/genomics-transcriptomics.md @@ -1,10 +1,9 @@ --- title: Genomics & transcriptomics data menu: - data_menu: + datasets_menu: identifier: genomics name: Genomics & transcriptomics data - parent: available_datasets aliases: - /sv/data_types/genomics_transcriptomics/data/ - /sv/data_types/genomics_transcriptomics/ diff --git a/content/english/datasets/health.md b/content/english/datasets/health.md index b11782419..3ee79efe5 100644 --- a/content/english/datasets/health.md +++ b/content/english/datasets/health.md @@ -1,10 +1,9 @@ --- title: Health data menu: - data_menu: + datasets_menu: identifier: health name: Health data - parent: available_datasets aliases: - /sv/data_types/health_data/data/ - /sv/data_types/health_data/ diff --git a/content/english/datasets/imaging.md b/content/english/datasets/imaging.md index 1becd0cac..111359357 100644 --- a/content/english/datasets/imaging.md +++ b/content/english/datasets/imaging.md @@ -1,10 +1,9 @@ --- title: Imaging data menu: - data_menu: + datasets_menu: identifier: imaging name: Imaging data - parent: available_datasets aliases: - /sv/data_types/imaging_data/data/ - /sv/data_types/imaging_data/ diff --git a/content/english/datasets/other.md b/content/english/datasets/other.md index 2dca5a087..bca7b6c1e 100644 --- a/content/english/datasets/other.md +++ b/content/english/datasets/other.md @@ -1,10 +1,9 @@ --- title: Other data menu: - data_menu: + datasets_menu: identifier: other name: Other data - parent: available_datasets aliases: - /sv/data_types/other_data/data/ - /data_types/other_data/data/ diff --git a/content/english/datasets/protein.md b/content/english/datasets/protein.md index fdbf07fc4..a3f418a13 100644 --- a/content/english/datasets/protein.md +++ b/content/english/datasets/protein.md @@ -1,10 +1,9 @@ --- title: Protein data menu: - data_menu: + datasets_menu: identifier: protein name: Protein data - parent: available_datasets aliases: - /sv/data_types/protein_data/data/ - /sv/data_types/protein_data/ diff --git a/content/english/datasets/public-health.md b/content/english/datasets/public-health.md index ed051df26..837e26be1 100644 --- a/content/english/datasets/public-health.md +++ b/content/english/datasets/public-health.md @@ -1,10 +1,9 @@ --- title: Public health data menu: - data_menu: + datasets_menu: identifier: public_health name: Public health data - parent: available_datasets aliases: - /sv/data_types/public_health/data/ - /data_types/public_health/data/ diff --git a/content/english/datasets/serology.md b/content/english/datasets/serology.md index 9f885c1e8..1508c1fb2 100644 --- a/content/english/datasets/serology.md +++ b/content/english/datasets/serology.md @@ -1,10 +1,9 @@ --- title: Serology data menu: - data_menu: + datasets_menu: identifier: serology_data name: Serology data - parent: available_datasets aliases: - /sv/data_types/serology/data/ - /data_types/serology/data/ diff --git a/content/english/datasets/social-science-humanities.md b/content/english/datasets/social-science-humanities.md index c464fc0ff..b84778ac6 100644 --- a/content/english/datasets/social-science-humanities.md +++ b/content/english/datasets/social-science-humanities.md @@ -1,11 +1,9 @@ --- title: Social science and humanities data menu: - data_menu: + datasets_menu: identifier: social name: Social science and humanities data - parent: available_datasets - --- ## Published Data diff --git a/content/english/events/_index.md b/content/english/events/_index.md index 5018d5e78..552fed553 100644 --- a/content/english/events/_index.md +++ b/content/english/events/_index.md @@ -1,6 +1,9 @@ --- -title: Ongoing research projects on COVID-19 funded by major Swedish funding agencies -toc: false +title: Events & Training +description: Community-sourced collection of events and training opportunities. +recaptcha: true --- -Overview of major events on COVID-19. +This section includes a list of upcoming conferences, webinars, workshops, and training opportunities related to pandemic preparedness and infectious disease. All events are open to Swedish researchers. If you know of an appropriate event that is not listed here, please suggest it using the form below. All times are given in Central European Time (CET/CEST). Questions about individual events should be directed to the organisers of that event. + +Events related to research data management in general are instead listed on the [SciLifeLab Data Platform](https://data.scilifelab.se/events/). diff --git a/content/english/highlights/_index.md b/content/english/highlights/_index.md index ae6aa9622..4243a5136 100644 --- a/content/english/highlights/_index.md +++ b/content/english/highlights/_index.md @@ -5,9 +5,6 @@ cascade: banner_caption: "3D rendering of a SARS-CoV-2 virion." toc: false menu: - data_menu: - identifier: highlights - name: Data highlights homepage_highlights: name: Data highlights identifier: highlights diff --git a/data/events.json b/data/events.json new file mode 100644 index 000000000..6c99ba592 --- /dev/null +++ b/data/events.json @@ -0,0 +1,86 @@ +{ + "items": [ + { + "title": "Vad innebär den nya biobankslagen", + "type": "Webinar", + "date_start": "2023-05-31", + "time_start": "12:00", + "time_end": "13:00", + "venue": "Zoom (online)", + "organisers": "Biobank Sverige", + "event_url": "https://biobanksverige.se/biobankslagen/ny-biobankslag/webbinarium/", + "description": "Biobank Sverige arrangerar under 2023 en ny webbinarserie kallad ”Vad innebär den nya biobankslagen?”. Under ett antal tillfällen diskuterar vi den nya biobankslagen och besvarar frågor. Markera din kalender redan idag!

Under aktuella datum kan du ansluta via följande länk: https://uu-se.zoom.us/j/67838883467" + }, + { + "title": "Vad innebär den nya biobankslagen", + "type": "Webinar", + "date_start": "2023-05-03", + "time_start": "12:00", + "time_end": "13:00", + "venue": "Zoom (online)", + "organisers": "Biobank Sverige", + "event_url": "https://biobanksverige.se/biobankslagen/ny-biobankslag/webbinarium/", + "description": "Biobank Sverige arrangerar under 2023 en ny webbinarserie kallad ”Vad innebär den nya biobankslagen?”. Under ett antal tillfällen diskuterar vi den nya biobankslagen och besvarar frågor. Markera din kalender redan idag!

Under aktuella datum kan du ansluta via följande länk: https://uu-se.zoom.us/j/67838883467" + }, + { + "title": "Vad innebär den nya biobankslagen", + "type": "Webinar", + "date_start": "2023-03-29", + "time_start": "12:00", + "time_end": "13:00", + "venue": "Zoom (online)", + "organisers": "Biobank Sverige", + "event_url": "https://biobanksverige.se/biobankslagen/ny-biobankslag/webbinarium/", + "description": "Biobank Sverige arrangerar under 2023 en ny webbinarserie kallad ”Vad innebär den nya biobankslagen?”. Under ett antal tillfällen diskuterar vi den nya biobankslagen och besvarar frågor. Markera din kalender redan idag!

Under aktuella datum kan du ansluta via följande länk: https://uu-se.zoom.us/j/67838883467" + }, + { + "title": "Meet a Data Steward & get Data Management support", + "type": "Support session", + "date_start": "2023-03-14", + "time_start": "15:00", + "date_end": "2023-03-14", + "time_end": "16:00", + "venue": "Uppsala Navet E10:2309 & Online via Zoom", + "organisers": "SciLifeLab Data Centre and NBIS", + "event_url": "https://www.scilifelab.se/event/meet-a-data-steward/", + "description": "Join SciLifeLab Data Centre and NBIS for a 15 min mini-lecture: “Want to know which services for researchers and infrastructure SciLifeLab Data Centre offers? Join us for a session about SciLifeLab Data Platform, SciLifeLab Data Repository, Storage, Compute and more. After the mini-lecture there is time for a general Q & A for 45 minutes. Join us on Zoom or on-site at BMC, Uppsala in E10:2309.

The NEW “Meet a data steward” sessions are held both at BMC Uppsala and online and are open for all researchers affiliated with a Swedish university or institute. Each event starts with a 15 minutes mini-lecture, and 45 minutes of free Q & A. Here you can bring your own research question, discuss data sharing, data repositories, data management plans, compute and storage or other data-related issues with data stewards and other experts from SciLifeLab Data Centre and NBIS." + }, + { + "title": "Infectious Diseases Toolkit (IDTk) Contentathon", + "type": "Workshop", + "date_start": "2023-03-13", + "time_start": "11:30", + "date_end": "2023-03-15", + "time_end": "14:00", + "registration_deadline": "2023-03-10", + "venue": "Monasterium PoortAckere, Belgium", + "organisers": "ELIXIR, Beligium", + "event_url": "https://www.eventbrite.co.uk/e/infectious-diseases-toolkit-idtk-contentathon-tickets-493601524447", + "description": "The Infectious Diseases Toolkit (IDTk) aims to offer guidelines and examples on managing, analysing and visualising infectious diseases data. It has been designed to accommodate information from different domains, to showcase different solutions, and to expose national resources. It is being developed as part of the BY-COVID project.

To catalyse the addition of content to the toolkit, we are organising a Contentathon involving both BY-COVID and external partners. We aim to bring together experts from various fields who have dealt with pandemics over the last few years, and who are interested in capturing all the innovative solutions and best practices that have been used to tackle infectious diseases outbreaks." + }, + { + "title": "Vad innebär den nya biobankslagen", + "type": "Webinar", + "date_start": "2023-03-01", + "time_start": "12:00", + "time_end": "13:00", + "venue": "Zoom (online)", + "organisers": "Biobank Sverige", + "event_url": "https://biobanksverige.se/biobankslagen/ny-biobankslag/webbinarium/", + "description": "Biobank Sverige arrangerar under 2023 en ny webbinarserie kallad ”Vad innebär den nya biobankslagen?”. Under ett antal tillfällen diskuterar vi den nya biobankslagen och besvarar frågor. Markera din kalender redan idag!

Under aktuella datum kan du ansluta via följande länk: https://uu-se.zoom.us/j/67838883467" + }, + { + "title": "Gothenburg Phenomics – Proof of Concept Project Invitation", + "type": "Open Hearing", + "date_start": "2023-03-01", + "time_start": "13:00", + "time_end": "15:00", + "registration_deadline": "2023-02-22", + "venue": "Arvid Carlsson Lecture Hall", + "organisers": "SciLifeLab Gothenburg", + "event_url": "https://www.gu.se/en/scilifelab/open-hearing-for-project-invitation-to-proof-of-concept-in-gothenburg-phenomics", + "registration_url": "https://forms.office.com/e/7YCiAPVw7X", + "description": "The aim is to establish proof-of-concept for life science research with expressed (pre-)clinical relevance. This will be achieved by forming a closed loop from biomedical research question (initiated by pre-clinical researchers) to returning actionable biological results, in terms of mechanisms and potential biomarkers and targets.

In this open hearing we would like to identify preclinical and clinical research questions where samples and data are available for proof of concept for a combined metabolomics/proteomics/data analysis study. We will coordinate data deliveries from platforms to data storage via inferential analysis and extraction of biomarkers and mechanisms of interest go from compute and back to the biomedical researcher (question owner)." + } + ] +} diff --git a/layouts/events/list.html b/layouts/events/list.html new file mode 100644 index 000000000..e28da1283 --- /dev/null +++ b/layouts/events/list.html @@ -0,0 +1,293 @@ +{{ define "main" }} + +
+
+ {{ .Content }}
+
+ +
+
+ +
+ +
+ +{{ $upcoming_events := slice }} +{{ range sort $.Site.Data.events.items ".date_start" "asc" }} +{{ $banner_date := cond (isset . "date_start") .date_start .registration_deadline }} +{{ if ge ($banner_date | time.Format "20060102") (now | time.Format "20060102") }} +{{ $upcoming_events = $upcoming_events | append . }} +{{ end }} +{{ end }} +{{ if ge (len $upcoming_events) 1 }} +
+
+ {{ range $ind, $cont := $upcoming_events }} + + {{/* Potentially different colors of the calendar icon depending on the event type */}} +
+
+
+
+ {{ .type }} +
{{ .title }}
+
+
+
+ {{ $banner_date := cond (isset . "date_start") .date_start .registration_deadline }} +
{{ time.Format "2" $banner_date }}
+
{{ time.Format "January" $banner_date }}
+ {{ if and (not .date_start) (.registration_deadline) }} +
(deadline)
+ {{ end }} +
+
+
+ {{ if .date_start }} +
+
+ Date and time: {{ .date_start | time.Format ":date_medium" }} + {{ if .time_start }} {{ .time_start }}{{ end }} + {{ if or .date_end .time_end }} - {{ end }} + {{ if and (.date_end) (ne .date_end .date_start) }}{{ .date_end | time.Format ":date_medium" }}{{ end}} + {{ if .time_end }}{{ .time_end }}{{ end }} +
+
+ {{ end }} + {{ if .registration_deadline }} +
+
+ Registration deadline: {{ .registration_deadline | time.Format ":date_medium" }} +
+
+ {{ end }} + {{ if .organisers }} +
+
+ Organiser(s): {{ .organisers }} +
+
+ {{ end }} + {{ if .venue }} +
+
+ Venue: {{ .venue }} +
+
+ {{ end }} +
+
+ + +
+
+
+
+ {{ end }} +
+
+{{ else }} +
+ We are currently unaware of any upcoming events or training opportunities relevant for life science. + If you know of any relevant events or training opportunities that should be shown here, please recommend + them to us using the "Submit an event" button above. +
+{{ end }} + + + +{{ end }} \ No newline at end of file diff --git a/layouts/highlights/list.html b/layouts/highlights/list.html index 62b6c3dcf..e1a1ad723 100644 --- a/layouts/highlights/list.html +++ b/layouts/highlights/list.html @@ -9,76 +9,76 @@
- - + + - -
@@ -103,4 +103,4 @@ }); -{{ end }} +{{ end }} \ No newline at end of file diff --git a/layouts/partials/navbar.html b/layouts/partials/navbar.html index d1a32614f..3e373382d 100644 --- a/layouts/partials/navbar.html +++ b/layouts/partials/navbar.html @@ -109,30 +109,25 @@ -
- {{ range .Site.Menus.data_menu }} - {{ if .HasChildren }} + aria-expanded="false">Available Data & Highlights +
+ aria-expanded="false">Available Datasets
- {{ range .Children }} + {{ range .Site.Menus.datasets_menu }} {{ .Name }} {{ end }}
- {{ else }} - {{ .Name }} - {{ end }} - {{ end }} -
+ Data Highlights +
- +
@@ -144,7 +139,12 @@
- Sample Collection Database (Biobanks) + Research Data Management +
+
+
+
+ Sample Collection Database (Biobanks)
@@ -171,21 +171,25 @@
- +
+
+ Events & Training +
+
Topics:
- {{ range .Site.Menus.topics_menu }}{{ .Name }}{{ end }} + {{ range $ind, $topic := .Site.Menus.topics_menu }} + {{ .Name }} + + {{ if eq (mod (add $ind 1) 2) 0 }}
{{ end }} + {{ end }}
diff --git a/static/css/styles.css b/static/css/styles.css index b15868758..14460bcf3 100644 --- a/static/css/styles.css +++ b/static/css/styles.css @@ -189,7 +189,7 @@ a.nav-link:active { .main_menu_item { color: rgba(46, 104, 165, 0.8); font-weight: 500; - font-size: 1.3em; + font-size: 1.25em; } .main_menu_item a { @@ -232,11 +232,6 @@ a.nav-link:active { left: -.18rem !important; } -.topics_title { - font-size: 1.3em; - font-weight: 500; -} - @media (max-width: 1199px) { .main_menu .border-right { border:0px solid !important @@ -436,6 +431,11 @@ div.dataTables_wrapper div.dataTables_info { /* * Styling of badges to indicate topics */ +.topics_title { + font-size: 1.25em; + font-weight: 500; +} + .topic_badge_small { color: #fff; display: inline-block; @@ -454,7 +454,7 @@ div.dataTables_wrapper div.dataTables_info { color: #fff; display: inline-block; padding: 0.25em 0.4em; - font-size: 1em; + font-size: 0.95em; font-weight: 700; line-height: 1; text-align: center; @@ -589,6 +589,16 @@ table.no-last-row-border > tbody > tr:last-child { border-color: #fff; } +.event-date { + background-color: #6590CD; + color: white; +} + +.event-type{ + background-color: #789ED3; + color: white; +} + /* * Customed horizontal divder, taken from the net */