From b926a2d8042214f2ea7b9dbf0047687b829aca46 Mon Sep 17 00:00:00 2001 From: ParamThakkar123 Date: Tue, 15 Oct 2024 01:29:01 +0530 Subject: [PATCH 01/10] Added Updates for BayesianInference --- benchmarks/BayesianInference/Project.toml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 3de6eca5e..5ac9f73a8 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -17,14 +17,14 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [compat] BenchmarkTools = "1.0" DiffEqBayes = "3.0.1" -DiffEqCallbacks = "2" +DiffEqCallbacks = "4.0.0" Distributions = "0.25" DynamicHMC = "3.1" OrdinaryDiffEq = "6" ParameterizedFunctions = "5.3" Plots = "1.4" -RecursiveArrayTools = "2.5" +RecursiveArrayTools = "3.27.0" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" -Turing = "0.28, 0.30" +Turing = "0.28, 0.30, 0.34.1" From ef4dadf27ec3e68abca5704992a172ef90f6b5cb Mon Sep 17 00:00:00 2001 From: ParamThakkar123 Date: Tue, 15 Oct 2024 08:18:21 +0530 Subject: [PATCH 02/10] Changes --- benchmarks/DynamicalODE/Project.toml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/benchmarks/DynamicalODE/Project.toml b/benchmarks/DynamicalODE/Project.toml index 9f60b4f57..f93a61973 100644 --- a/benchmarks/DynamicalODE/Project.toml +++ b/benchmarks/DynamicalODE/Project.toml @@ -14,7 +14,7 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" TaylorIntegration = "92b13dbe-c966-51a2-8445-caca9f8a7d42" [compat] -DiffEqCallbacks = "2.13, 3" +DiffEqCallbacks = "3" DiffEqPhysics = "3.2" Elliptic = "1.0" OrdinaryDiffEq = "6" @@ -23,5 +23,4 @@ Plots = "1.4" PyPlot = "2.9" SciMLBenchmarks = "0.1" StaticArrays = "1.0" -Statistics = "1" -TaylorIntegration = "0.16" \ No newline at end of file +Statistics = "1" \ No newline at end of file From 0c2dbfcfff54a9fe560d5b3b97d87f572f9e44dd Mon Sep 17 00:00:00 2001 From: ParamThakkar123 Date: Tue, 15 Oct 2024 12:17:56 +0530 Subject: [PATCH 03/10] Updates --- benchmarks/BayesianInference/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 5ac9f73a8..7954b0f2c 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -27,4 +27,4 @@ RecursiveArrayTools = "3.27.0" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" -Turing = "0.28, 0.30, 0.34.1" +Turing = "0.34.1" From 1e4aaeec9d30b979a0298a3cdd0057ca97fd8aef Mon Sep 17 00:00:00 2001 From: ParamThakkar123 Date: Tue, 15 Oct 2024 01:29:01 +0530 Subject: [PATCH 04/10] Added Updates for BayesianInference --- benchmarks/BayesianInference/Project.toml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 3de6eca5e..5ac9f73a8 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -17,14 +17,14 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [compat] BenchmarkTools = "1.0" DiffEqBayes = "3.0.1" -DiffEqCallbacks = "2" +DiffEqCallbacks = "4.0.0" Distributions = "0.25" DynamicHMC = "3.1" OrdinaryDiffEq = "6" ParameterizedFunctions = "5.3" Plots = "1.4" -RecursiveArrayTools = "2.5" +RecursiveArrayTools = "3.27.0" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" -Turing = "0.28, 0.30" +Turing = "0.28, 0.30, 0.34.1" From 29110a44abc1a83ecf8d62bcd1032ef8c7867011 Mon Sep 17 00:00:00 2001 From: ParamThakkar123 Date: Tue, 15 Oct 2024 12:17:56 +0530 Subject: [PATCH 05/10] Updates --- benchmarks/BayesianInference/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 5ac9f73a8..7954b0f2c 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -27,4 +27,4 @@ RecursiveArrayTools = "3.27.0" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" -Turing = "0.28, 0.30, 0.34.1" +Turing = "0.34.1" From b9079042755c7ce957277a3a8019e1e9d5669fc4 Mon Sep 17 00:00:00 2001 From: Christopher Rackauckas Date: Sun, 20 Oct 2024 20:52:28 -0400 Subject: [PATCH 06/10] Revert "Bayesian inference" --- benchmarks/BayesianInference/Project.toml | 6 +++--- benchmarks/DynamicalODE/Project.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 7954b0f2c..3de6eca5e 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -17,14 +17,14 @@ Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [compat] BenchmarkTools = "1.0" DiffEqBayes = "3.0.1" -DiffEqCallbacks = "4.0.0" +DiffEqCallbacks = "2" Distributions = "0.25" DynamicHMC = "3.1" OrdinaryDiffEq = "6" ParameterizedFunctions = "5.3" Plots = "1.4" -RecursiveArrayTools = "3.27.0" +RecursiveArrayTools = "2.5" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" -Turing = "0.34.1" +Turing = "0.28, 0.30" diff --git a/benchmarks/DynamicalODE/Project.toml b/benchmarks/DynamicalODE/Project.toml index a32ee9adc..2003a0847 100644 --- a/benchmarks/DynamicalODE/Project.toml +++ b/benchmarks/DynamicalODE/Project.toml @@ -24,4 +24,4 @@ PyPlot = "2.11.5" SciMLBenchmarks = "0.1.3" StaticArrays = "1.9.7" Statistics = "1.11.1" -TaylorIntegration = "0.16.1" \ No newline at end of file +TaylorIntegration = "0.16.1" From c07479d3fbadd18c8a65365d8db91db22b712ff4 Mon Sep 17 00:00:00 2001 From: CompatHelper Julia Date: Mon, 4 Nov 2024 00:31:13 +0000 Subject: [PATCH 07/10] CompatHelper: bump compat for NonlinearSolve to 4 for package ComplicatedPDE, (keep existing compat) --- benchmarks/ComplicatedPDE/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/ComplicatedPDE/Project.toml b/benchmarks/ComplicatedPDE/Project.toml index 51f93964e..59f99b135 100644 --- a/benchmarks/ComplicatedPDE/Project.toml +++ b/benchmarks/ComplicatedPDE/Project.toml @@ -19,7 +19,7 @@ GaussianRandomFields = "2" LSODA = "0.7" LinearSolve = "2" ModelingToolkit = "8" -NonlinearSolve = "1, 2" +NonlinearSolve = "1, 2, 4" ODEInterfaceDiffEq = "3" OrdinaryDiffEq = "6" Plots = "1" From 2b5298a2ea148df554ee47dda71d3a42a4fb5977 Mon Sep 17 00:00:00 2001 From: CompatHelper Julia Date: Mon, 4 Nov 2024 00:33:16 +0000 Subject: [PATCH 08/10] CompatHelper: bump compat for NonlinearSolve to 4 for package IntervalNonlinearProblem, (keep existing compat) --- benchmarks/IntervalNonlinearProblem/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/IntervalNonlinearProblem/Project.toml b/benchmarks/IntervalNonlinearProblem/Project.toml index decf91efd..46bd106ba 100644 --- a/benchmarks/IntervalNonlinearProblem/Project.toml +++ b/benchmarks/IntervalNonlinearProblem/Project.toml @@ -7,7 +7,7 @@ SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" [compat] BenchmarkTools = "1" -NonlinearSolve = "1, 2, 3" +NonlinearSolve = "1, 2, 3, 4" Plots = "1.13" Roots = "2" SciMLBenchmarks = "0.1" From 4645774eed60d482195085572ac41510fcfe14c6 Mon Sep 17 00:00:00 2001 From: CompatHelper Julia Date: Mon, 4 Nov 2024 00:38:35 +0000 Subject: [PATCH 09/10] CompatHelper: bump compat for NonlinearSolve to 4 for package NonlinearProblem, (keep existing compat) --- benchmarks/NonlinearProblem/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/NonlinearProblem/Project.toml b/benchmarks/NonlinearProblem/Project.toml index 16ebc3015..4a1147ab9 100644 --- a/benchmarks/NonlinearProblem/Project.toml +++ b/benchmarks/NonlinearProblem/Project.toml @@ -35,7 +35,7 @@ LinearSolve = "2" MINPACK = "1.2" NLsolve = "4.5" NonlinearProblemLibrary = "0.1" -NonlinearSolve = "3" +NonlinearSolve = "3, 4" PolyesterForwardDiff = "0.1" PrettyTables = "2" SciMLBenchmarks = "0.1" From dd5e344960f711d240fe13379dab463f1a7c61ce Mon Sep 17 00:00:00 2001 From: CompatHelper Julia Date: Mon, 4 Nov 2024 00:38:37 +0000 Subject: [PATCH 10/10] CompatHelper: bump compat for SimpleNonlinearSolve to 2 for package NonlinearProblem, (keep existing compat) --- benchmarks/NonlinearProblem/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/NonlinearProblem/Project.toml b/benchmarks/NonlinearProblem/Project.toml index 16ebc3015..d7fac733d 100644 --- a/benchmarks/NonlinearProblem/Project.toml +++ b/benchmarks/NonlinearProblem/Project.toml @@ -40,7 +40,7 @@ PolyesterForwardDiff = "0.1" PrettyTables = "2" SciMLBenchmarks = "0.1" Setfield = "1" -SimpleNonlinearSolve = "1" +SimpleNonlinearSolve = "1, 2" SparseDiffTools = "2" SpeedMapping = "0.3" StableRNGs = "1"