diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html index 359b496..3dedd65 100644 --- a/docs/articles/introduction.html +++ b/docs/articles/introduction.html @@ -99,7 +99,7 @@

package = "schtools") dist_tbl <- read_dist(dist_filepath) head(dist_tbl) -#> # A tibble: 6 x 3 +#> # A tibble: 6 × 3 #> rows columns distances #> <chr> <chr> <dbl> #> 1 104_1_D1 104_1_D0 0.893 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index e5e720a..785e1ce 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 1.6.1 pkgdown_sha: ~ articles: introduction: introduction.html -last_built: 2021-05-19T19:53Z +last_built: 2021-10-25T17:27Z diff --git a/docs/reference/read_dist.html b/docs/reference/read_dist.html index 3b50b2e..7aa61e2 100644 --- a/docs/reference/read_dist.html +++ b/docs/reference/read_dist.html @@ -152,15 +152,15 @@

Examp ) dist_tbl <- read_dist(dist_filepath) head(dist_tbl) -
#> # A tibble: 6 x 3 +
#> # A tibble: 6 × 3 #> rows columns distances -#> <chr> <chr> <dbl> -#> 1 104_1_D1 104_1_D0 0.893 -#> 2 104_1_D10 104_1_D0 0.254 -#> 3 104_1_D10 104_1_D1 0.922 -#> 4 104_1_D2 104_1_D0 0.874 -#> 5 104_1_D2 104_1_D1 0.109 -#> 6 104_1_D2 104_1_D10 0.904
+#> <chr> <chr> <dbl> +#> 1 104_1_D1 104_1_D0 0.893 +#> 2 104_1_D10 104_1_D0 0.254 +#> 3 104_1_D10 104_1_D1 0.922 +#> 4 104_1_D2 104_1_D0 0.874 +#> 5 104_1_D2 104_1_D1 0.109 +#> 6 104_1_D2 104_1_D10 0.904
#> # A tibble: 6 x 9 -#> OTU Kingdom Phylum Class Order Family Genus tax_otu_label otu_label -#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> -#> 1 Otu00… Bacteria Bacter… Bacte… Bacte… Bacter… Bacter… Bacteroides (… OTU 1 -#> 2 Otu00… Bacteria Bacter… Bacte… Bacte… Porphy… Porphy… Porphyromonad… OTU 3 -#> 3 Otu00… Bacteria Bacter… Bacte… Bacte… Porphy… Porphy… Porphyromonad… OTU 4 -#> 4 Otu00… Bacteria Proteo… Gamma… Enter… Entero… Entero… Enterobacteri… OTU 8 -#> 5 Otu00… Bacteria Bacter… Bacte… Bacte… Bacter… Bacter… Bacteria (OTU… OTU 44 -#> 6 Otu00… Bacteria Bacter… Bacte… Bacte… Bacter… Bacter… Bacteria (OTU… OTU 56
+
#> # A tibble: 6 × 9 +#> OTU Kingdom Phylum Class Order Family Genus tax_otu_label otu_label +#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> +#> 1 Otu0001 Bacteria Bacter… Bacte… Bacte… Bacter… Bacte… Bacteroides … OTU 1 +#> 2 Otu0003 Bacteria Bacter… Bacte… Bacte… Porphy… Porph… Porphyromona… OTU 3 +#> 3 Otu0004 Bacteria Bacter… Bacte… Bacte… Porphy… Porph… Porphyromona… OTU 4 +#> 4 Otu00008 Bacteria Proteo… Gamma… Enter… Entero… Enter… Enterobacter… OTU 8 +#> 5 Otu0044 Bacteria Bacter… Bacte… Bacte… Bacter… Bacte… Bacteria (OT… OTU 44 +#> 6 Otu0056 Bacteria Bacter… Bacte… Bacte… Bacter… Bacte… Bacteria (OT… OTU 56