From 376c8ea9356b777771ae8b5330acc4b563531886 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 08:30:20 -0700
Subject: [PATCH 01/19] v1.1.3

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 1cab0a88..8d8867e1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.2" 
+version = "1.1.3" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From ad12471639875afb1505cb43a6c55326988b2322 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 10:43:52 -0700
Subject: [PATCH 02/19] v1.1.4

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8d8867e1..d3671dc1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.3" 
+version = "1.1.4" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 7f47283f210ba54a5e2cf065b4d54bd731042544 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 10:48:09 -0700
Subject: [PATCH 03/19] remove unused imports

---
 src/coastseg/upload_feature_widget.py |  85 -----------------
 src/coastseg/watchable_slider.py      | 131 --------------------------
 2 files changed, 216 deletions(-)
 delete mode 100644 src/coastseg/upload_feature_widget.py
 delete mode 100644 src/coastseg/watchable_slider.py

diff --git a/src/coastseg/upload_feature_widget.py b/src/coastseg/upload_feature_widget.py
deleted file mode 100644
index c9b4bf1f..00000000
--- a/src/coastseg/upload_feature_widget.py
+++ /dev/null
@@ -1,85 +0,0 @@
-
-from typing import Set
-import ipywidgets as widgets
-from ipywidgets import VBox, Box
-from IPython.display import display
-from ipyfilechooser import FileChooser
-
-"""
-This code defines a FileUploader class, which provides a GUI for uploading GeoJSON files.
-It uses IPython widgets to create interactive elements like dropdowns, buttons, and file choosers.
-"""
-
-class FileUploader:
-    def __init__(
-        self,
-        title:str="Upload a GeoJSON File",
-        instructions:str="",
-        dropdown_options: Set[str] = set(),
-        filter_pattern: str = "*.geojson",
-        file_selection_title: str = "",
-        starting_directory: str = "",
-        max_width: int = 400,
-    ):
-        self.filenames = widgets.SelectMultiple(options=[])
-        self.remove_button = widgets.Button(
-            description="Remove",
-            button_style="danger",
-            layout=widgets.Layout(width="75px", height="28px"),
-        )
-        uploaded_files_title = widgets.HTML(value="<b>Uploaded Files</b>")
-        self.remove_widget = widgets.VBox(
-            [uploaded_files_title, widgets.HBox([self.filenames, self.remove_button])]
-        )
-
-        # Convert max_width to string form
-        self.max_width = f"{max_width}px"
-
-        # If title or instructions are empty, don't create the widget.
-        self.title = widgets.HTML(value=f"<h2>{title}</h2>") if title else None
-        self.instructions = Box(
-            [widgets.HTML(value=instructions, layout=widgets.Layout(overflow='auto', white_space='pre-wrap',max_width=self.max_width))],
-            layout=widgets.Layout(overflow='auto', width='auto')
-        ) if instructions else None
-
-        self.dropdown = widgets.Dropdown(
-            options=list(dropdown_options) if dropdown_options else ["transects", "shorelines"]
-        )
-
-        self.files_dict = {}
-        self.file_dialog = FileChooser(starting_directory)
-        self.file_dialog_row = widgets.HBox([self.file_dialog])
-
-        self._initialize_file_dialog(filter_pattern, file_selection_title)
-
-        # Register event handlers
-        self.remove_button.on_click(self.remove_file)
-
-    def _initialize_file_dialog(self, filter_pattern, file_selection_title):
-        self.file_dialog.title = f"<b>{file_selection_title}</b>"
-        self.file_dialog.filter_pattern = filter_pattern if isinstance(filter_pattern, list) else [filter_pattern]
-        self.file_dialog.register_callback(self.save_file)
-
-    def remove_file(self, button: widgets.Button):
-        selected_files = self.filenames.value
-        for selected_file in selected_files:
-            self.files_dict = {k: v for k, v in self.files_dict.items() if v != selected_file}
-        self.filenames.options = list(self.files_dict.values())
-
-    def save_file(self, selected: tuple):
-        feature = self.dropdown.value
-        self.files_dict[feature] = self.file_dialog.selected
-        self.filenames.options = list(self.files_dict.values())
-        # Clear the file selection
-        self.file_dialog.reset()
-
-    def _get_widgets_to_display(self):
-        # Order of widgets
-        return [w for w in [self.title, self.instructions, self.dropdown, self.remove_widget, self.file_dialog_row] if w is not None]
-
-    def display(self):
-        display(*self._get_widgets_to_display())
-
-    def get_FileUploader_widget(self):
-        return VBox(self._get_widgets_to_display(), layout=widgets.Layout(max_width=self.max_width))
-    
diff --git a/src/coastseg/watchable_slider.py b/src/coastseg/watchable_slider.py
deleted file mode 100644
index 64fac44b..00000000
--- a/src/coastseg/watchable_slider.py
+++ /dev/null
@@ -1,131 +0,0 @@
-from typing import Callable
-import logging
-
-import ipywidgets
-from ipywidgets import Layout
-
-
-logger = logging.getLogger(__name__)
-
-"""
-This class is a widget that allows the user to load extracted shorelines on the map.
-"""
-
-
-# write docstring for this class
-class Extracted_Shoreline_widget(ipywidgets.VBox):
-    def __init__(self, map_interface=None):
-        # map interface that has extracted shorelines
-        self.map_interface = map_interface
-        self.map_interface.extract_shorelines_container.observe(
-            self.update_satname_widget, names="satname"
-        )
-        self.map_interface.extract_shorelines_container.observe(
-            self.update_date_widget, names="date"
-        )
-
-        self.satellite_html = ipywidgets.HTML(
-            value=f"<b>Satellite</b>: {self.map_interface.extract_shorelines_container.satname}"
-        )
-        self.date_html = ipywidgets.HTML(
-            value=f"<b>Date</b>: {self.map_interface.extract_shorelines_container.date}"
-        )
-        title_html = ipywidgets.HTML(
-            value="<h3>Load Extracted Shorelines</h3>", layout=Layout(padding="0px")
-        )
-
-        self.create_dropdown()
-        self.create_slider()
-
-        self.load_extracted_shorelines_button = ipywidgets.Button(
-            description="Load Shorelines"
-        )
-
-        # list of objects to watch
-        self._observables = []
-        # Roi information bar
-        roi_info_row = ipywidgets.HBox([self.satellite_html, self.date_html])
-        super().__init__(
-            [
-                title_html,
-                self.dropdown,
-                self.slider,
-                ipywidgets.HTML(value="<b>Extracted Shoreline Information</b>:  "),
-                roi_info_row,
-            ]
-        )
-
-    def update_satname_widget(self, change):
-        self.satellite_html.value = f"Satellite: {change['new']}"
-
-    def update_date_widget(self, change):
-        self.date_html.value = f"Date: {change['new']}"
-
-    def create_slider(self):
-        self.slider = ipywidgets.IntSlider(
-            value=self.map_interface.extract_shorelines_container.max_shorelines,
-            min=0,
-            max=1,
-            step=1,
-            description="Shoreline:",
-            disabled=True,
-            continuous_update=False,  # only load in new value when slider is released
-            orientation="horizontal",
-        )
-
-        # Function to update widget options when the traitlet changes
-        def update_extracted_shoreline_slider(change):
-            self.slider.max = change["new"]
-            if change["new"] > 0:
-                self.slider.disabled = False
-            else:
-                self.slider.disabled = True
-
-        # When the traitlet,id_container, trait 'max_shorelines' changes the update_extracted_shoreline_slider will be updated
-        self.map_interface.extract_shorelines_container.observe(
-            update_extracted_shoreline_slider, names="max_shorelines"
-        )
-        self.slider.observe(self.on_slider_change, names="value")
-
-    def create_dropdown(self):
-        self.dropdown = ipywidgets.Dropdown(
-            options=self.map_interface.id_container.ids,
-            description="Select ROI:",
-            style={"description_width": "initial"},
-        )
-
-        # Function to update widget options when the traitlet changes
-        def update_select_roi_dropdown(change):
-            self.dropdown.options = change["new"]
-
-        # When the traitlet,id_container, trait 'ids' changes the update_select_roi_dropdown will be updated
-        self.map_interface.id_container.observe(update_select_roi_dropdown, names="ids")
-        self.dropdown.observe(self.on_dropdown_change, names="value")
-
-    def set_load_extracted_shorelines_button_on_click(self, on_click: Callable):
-        self.load_extracted_shorelines_button.on_click(lambda button: on_click())
-
-    def on_slider_change(self, change):
-        # get the row number from the extracted_shoreline_slider
-        row_number = change["new"]
-        # get the extracted shoreline by the row number from the map_interface
-        roi_id = self.dropdown.value
-        self.map_interface.load_extracted_shoreline_by_id(roi_id, row_number=row_number)
-
-    def on_dropdown_change(self, change: dict):
-        """When the ROI ID in the dropdown changes load the
-        first extracted shoreline available.
-
-        Args:
-            change (dict): a change dictionary containing the new change under the key ['new'].
-            change["new"] will be an string ROI_ID
-        """
-        roi_id = change["new"]
-        # get the extracted shoreline by the row number from the map_interface
-        self.map_interface.load_extracted_shoreline_by_id(roi_id, row_number=0)
-
-    def set_satellite_html(self, satellite: str):
-        self.satellite_html.value = f"<b>Satellite</b>: {satellite} "
-
-    def set_date_html(self, date: str):
-        self.date_html.value = f"<b>Date</b>: {date} "

From e2bfb2fe82fd5c7df37eee57ce92bd8703f2662b Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 10:48:31 -0700
Subject: [PATCH 04/19] v1.1.5

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index d3671dc1..5451d35c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.4" 
+version = "1.1.5" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From c0e946afadca86a6e7c882d49e7f81bf959ec83a Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 10:51:38 -0700
Subject: [PATCH 05/19] update MANIFEST to exclude the tests, scripts,docs

---
 MANIFEST.in | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 276fe116..ea3dea93 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -5,9 +5,10 @@ include *.md
 
 # Include src, tests,docs and scripts directories in package
 graft src
-graft tests
-graft docs
-graft scripts
+# no longer include scripts, docs and tests because it makes the package too large
+# graft tests
+# graft docs
+# graft scripts
 
 # Include bounding boxes for shorelines and transects
 recursive-include src/coastseg/bounding_boxes *.csv

From c442c2d319a12804674e07a5677758656b7c12c7 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 10:51:59 -0700
Subject: [PATCH 06/19] v1.1.6

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 5451d35c..2520e78f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.5" 
+version = "1.1.6" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 5f62257703dc5a1083829c8ef8e98bb7cd7c9115 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:03:51 -0700
Subject: [PATCH 07/19] prune tests, docs, and scripts from manifest

---
 MANIFEST.in | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index ea3dea93..95bc34f2 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -3,12 +3,12 @@ include LICENSE
 include pyproject.toml
 include *.md
 
-# Include src, tests,docs and scripts directories in package
+# Include src directories in package
 graft src
-# no longer include scripts, docs and tests because it makes the package too large
-# graft tests
-# graft docs
-# graft scripts
+# don't include the tests, docs or scripts
+prune tests
+prune docs
+prune scripts
 
 # Include bounding boxes for shorelines and transects
 recursive-include src/coastseg/bounding_boxes *.csv

From 52e7b8b20b4d83d438baf430c3107ba1a2d45c59 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:04:05 -0700
Subject: [PATCH 08/19] v1.1.7

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 2520e78f..fdb048df 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.6" 
+version = "1.1.7" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From be0163dfe7d6af05749426f36918712ca08b605f Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:15:33 -0700
Subject: [PATCH 09/19] remove unused bounding box.csv

---
 .../usa_shorelines_bounding_boxes.csv         |  299 ---
 .../world_shorelines_bounding_boxes.csv       | 2002 -----------------
 2 files changed, 2301 deletions(-)
 delete mode 100644 src/coastseg/bounding_boxes/usa_shorelines_bounding_boxes.csv
 delete mode 100644 src/coastseg/bounding_boxes/world_shorelines_bounding_boxes.csv

diff --git a/src/coastseg/bounding_boxes/usa_shorelines_bounding_boxes.csv b/src/coastseg/bounding_boxes/usa_shorelines_bounding_boxes.csv
deleted file mode 100644
index bb11807e..00000000
--- a/src/coastseg/bounding_boxes/usa_shorelines_bounding_boxes.csv
+++ /dev/null
@@ -1,299 +0,0 @@
-filename,minx,miny,maxx,maxy
-us_county0_ref_shoreline.geojson,-123.09050609499992,48.64084214300004,-120.67683517199993,48.992514547000084
-us_county73_ref_shoreline.geojson,-70.03903535289751,45.57550690311903,-67.7578490809999,47.45968821300001
-us_county74_ref_shoreline.geojson,-68.1060224169999,44.39720286700003,-66.9773249989999,45.692250875000084
-us_county79_ref_shoreline.geojson,-117.59630286418582,32.53166949000402,-116.07974601199992,33.50501413600006
-us_county97_ref_shoreline.geojson,-97.86186757999991,25.843901673000047,-97.1375219389999,26.41120638423533
-us_county111_ref_shoreline.geojson,-98.0042335419999,26.299299587000064,-97.2284225389974,26.611764534000088
-us_county112_ref_shoreline.geojson,-97.98587952399994,26.597989531000053,-97.29020987419999,27.283500883000045
-us_county113_ref_shoreline.geojson,-98.0597934889999,27.209072407000065,-97.21868144383535,27.63592731700004
-us_county114_ref_shoreline.geojson,-97.94213852199994,27.55834832900007,-97.04401607999995,27.98331432770699
-us_county115_ref_shoreline.geojson,-97.90038001210372,27.82172272300005,-97.13303833345935,28.17676120400006
-us_county116_ref_shoreline.geojson,-97.26036962099994,27.852036851000037,-96.78746497303007,28.314276434609724
-us_county117_ref_shoreline.geojson,-97.5410636009999,28.06285988700006,-96.76695716099994,28.55959707238987
-us_county118_ref_shoreline.geojson,-96.9493708975204,28.071193752000056,-96.32106302784335,28.719875393000052
-us_county119_ref_shoreline.geojson,-97.30590863399993,28.500596421348202,-96.64981035106683,29.10404098500004
-us_county120_ref_shoreline.geojson,-96.93857971499995,28.677604668491814,-96.30917088299992,29.263870947000044
-us_county121_ref_shoreline.geojson,-96.36969967399995,28.40692780200004,-95.50395190758202,29.22969692700008
-us_county122_ref_shoreline.geojson,-95.87402098099994,28.820035625820967,-95.06517493417584,29.597768252000037
-us_county123_ref_shoreline.geojson,-95.23307413599991,29.088597249000088,-94.37156835299993,29.598088228000055
-us_county124_ref_shoreline.geojson,-95.96076891999991,29.497337937000054,-94.90791420199992,30.170402722000066
-us_county125_ref_shoreline.geojson,-94.98031818599992,29.52427124700006,-94.3352758449999,29.88993474600005
-us_county126_ref_shoreline.geojson,-94.44490331399993,29.578192450000074,-93.85407467399995,30.188632673000086
-us_county127_ref_shoreline.geojson,-94.13063396629978,29.983621329000073,-93.70397343112893,30.25478924412829
-us_county128_ref_shoreline.geojson,-93.89369709399995,29.58816676144437,-92.61409580899993,30.07981365837361
-us_county129_ref_shoreline.geojson,-92.73731682999994,29.533836437000048,-91.96445197199995,30.147437619000073
-us_county130_ref_shoreline.geojson,-92.03652910099993,29.48383209800005,-91.2243501719999,30.122407607000074
-us_county131_ref_shoreline.geojson,-91.86668860599991,29.48383209800005,-91.08259622599991,29.955983636000045
-us_county132_ref_shoreline.geojson,-91.33967037699995,29.040961005000042,-90.37862890399992,29.77583439200004
-us_county133_ref_shoreline.geojson,-91.00673724299992,29.05805084800005,-90.01756751199991,29.921592278000045
-us_county134_ref_shoreline.geojson,-90.28028425799994,29.21637604400007,-89.91315670499995,30.06116992072244
-us_county135_ref_shoreline.geojson,-90.07535152199995,28.92837148600006,-89.01016191299993,29.904998599000066
-us_county136_ref_shoreline.geojson,-90.01096735078974,29.469142971000053,-88.81094316299993,30.168524481000077
-us_county137_ref_shoreline.geojson,-90.14006846799992,29.8751081400982,-89.63955644399994,30.17527903900009
-us_county138_ref_shoreline.geojson,-90.54226835899993,29.692022654000084,-90.16731639799991,30.09396393958222
-us_county139_ref_shoreline.geojson,-90.6888443169999,29.88462157600009,-90.31496974384649,30.296825526000077
-us_county140_ref_shoreline.geojson,-90.5674983159999,30.283402479000074,-90.24290128199995,31.000150571891368
-us_county141_ref_shoreline.geojson,-90.25565840899992,30.155910549000055,-89.52599036399994,30.71202246200005
-us_county142_ref_shoreline.geojson,-89.67760624393298,30.18154531500005,-89.31834876199991,30.64836242300004
-us_county143_ref_shoreline.geojson,-89.34496008999992,30.195786851000037,-88.85936438699991,30.67728639700005
-us_county144_ref_shoreline.geojson,-88.88452877999993,30.209418036000045,-88.40221195218301,30.735585383000053
-us_county145_ref_shoreline.geojson,-88.44279406106807,30.236761786000045,-87.94066321522872,31.17330025800004
-us_county146_ref_shoreline.geojson,-88.03014075399994,30.22361888200004,-87.39207923099991,31.303322106000056
-us_county147_ref_shoreline.geojson,-87.6269226499603,30.298223615918786,-86.91820227799991,30.999794898910892
-us_county148_ref_shoreline.geojson,-87.31517493397872,30.360296942000048,-86.78574135699995,30.9998331894501
-us_county149_ref_shoreline.geojson,-86.80594677148301,30.374209119434337,-86.38864246899993,30.999906432036198
-us_county150_ref_shoreline.geojson,-86.39680935742098,30.273256946012616,-85.86628170481207,30.999932137744775
-us_county151_ref_shoreline.geojson,-85.99421650165712,29.92324453300006,-85.38410536899994,30.567588310000076
-us_county152_ref_shoreline.geojson,-85.41348222599993,29.67837148600006,-85.00792395741622,30.20101739000006
-us_county153_ref_shoreline.geojson,-85.21440461357035,29.605861721000053,-84.33608964799993,30.013878781000074
-us_county154_ref_shoreline.geojson,-84.74705969960372,29.969875393000052,-84.07555715799992,30.303487338000085
-us_county155_ref_shoreline.geojson,-84.07596915399995,30.087712428870606,-83.60418228099991,30.669657408262765
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diff --git a/src/coastseg/bounding_boxes/world_shorelines_bounding_boxes.csv b/src/coastseg/bounding_boxes/world_shorelines_bounding_boxes.csv
deleted file mode 100644
index a526aa89..00000000
--- a/src/coastseg/bounding_boxes/world_shorelines_bounding_boxes.csv
+++ /dev/null
@@ -1,2002 +0,0 @@
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-province4188_ref_shoreline.geojson,125.52218875540666,38.70469208427227,126.3872522316052,39.283183906012425
-province4200_ref_shoreline.geojson,-99.04973670078812,17.892189846084534,-96.72812130395499,20.825344143417453
-province4205_ref_shoreline.geojson,-102.29966752833377,21.174263413925416,-98.34771236873081,24.564960842368976
-province4208_ref_shoreline.geojson,-107.12627214214564,22.3191030954315,-102.4902502096794,26.83859467230627
-province4276_ref_shoreline.geojson,49.91822472459137,30.14482697198713,51.67119266101247,31.48789744740924
-province4277_ref_shoreline.geojson,50.6013871598895,27.13937734628746,55.55726036957037,31.712534897867215
-province4278_ref_shoreline.geojson,54.39805464070906,26.01024730107207,59.51536502497589,32.0491810169903
-province4285_ref_shoreline.geojson,80.26055870971663,17.77607290344173,84.35333214706088,24.14023224512198
-province4287_ref_shoreline.geojson,77.25743452308473,15.829657293744035,81.78656907670259,19.891292628951646
-province4307_ref_shoreline.geojson,21.532360467361684,61.98531240484357,24.582510207380153,63.48976837800819
-province4340_ref_shoreline.geojson,93.90396365799637,18.357620357093765,95.85743615055787,22.7118181417938
-province4393_ref_shoreline.geojson,-63.07262947946691,18.202760427351848,-63.061307675908495,18.219152103187014
-province4396_ref_shoreline.geojson,-64.68102438226941,32.36977847069983,-64.66849103992956,32.38096895435376
-province4401_ref_shoreline.geojson,57.465406721642864,-20.201959010300072,57.55030877792774,-20.12221380602233
-province4407_ref_shoreline.geojson,55.47410955051532,-4.6651478411000085,55.489475476711846,-4.647542879100627
-province4414_ref_shoreline.geojson,10.317817318214622,44.913487812912194,11.421503884396714,45.423846718551204
-province4429_ref_shoreline.geojson,10.640529733660287,45.05303615799227,11.487158183503368,45.83405425410052
-province4430_ref_shoreline.geojson,11.741535634861634,45.53302885219972,12.672802760139234,46.082213442995965
-province4439_ref_shoreline.geojson,12.997053260899236,41.30857678608976,14.010080642907326,41.947045739569205
-province4441_ref_shoreline.geojson,13.0119946675199,41.68691298234825,14.229410536567002,42.603766044567294
-province4534_ref_shoreline.geojson,24.247286846310885,57.02807179128013,24.508734750508324,57.183827989869826
-province4547_ref_shoreline.geojson,45.00560468930496,-23.703199046998407,47.20106128205248,-21.666790866705128
-province4575_ref_shoreline.geojson,14.479071691305478,35.875646269359834,14.49809647147498,35.88829869542843
-province4576_ref_shoreline.geojson,14.480255115481157,35.862924458796726,14.500669182736601,35.884426766881745
-province4587_ref_shoreline.geojson,14.493272781413737,35.85848661836275,14.513686848669124,35.885409519034056
-province4588_ref_shoreline.geojson,14.485885005488626,35.89517276870828,14.507478451769146,35.90661589440799
-province4589_ref_shoreline.geojson,14.496160507201637,35.8797882544244,14.510728288679559,35.89517276870828
-province4590_ref_shoreline.geojson,14.489161252789586,35.89162249618124,14.501556750643488,35.8973828346501
-province4591_ref_shoreline.geojson,14.508361440328201,35.88037996606255,14.52125583888585,35.89112818112062
-province4592_ref_shoreline.geojson,14.510728288679559,35.87387113264663,14.529367220121117,35.88710666743873
-province4595_ref_shoreline.geojson,14.515371228499362,35.88156339023823,14.529367220121117,35.8942542578277

From 23f3a067be93b816157d70948536d0ec2fbea466 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:16:44 -0700
Subject: [PATCH 10/19] remove more items using manifest

---
 MANIFEST.in | 30 +++++++++++++++++++++++++-----
 1 file changed, 25 insertions(+), 5 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 95bc34f2..adf818f9 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -5,10 +5,6 @@ include *.md
 
 # Include src directories in package
 graft src
-# don't include the tests, docs or scripts
-prune tests
-prune docs
-prune scripts
 
 # Include bounding boxes for shorelines and transects
 recursive-include src/coastseg/bounding_boxes *.csv
@@ -21,4 +17,28 @@ recursive-exclude src/coastseg/downloaded_models *
 
 # Remove the pycache directory and any pycache files
 prune src/coastseg/__pycache__
-recursive-exclude * *.py[co]
\ No newline at end of file
+recursive-exclude * *.py[co]
+
+# don't include the tests, docs or scripts
+prune tests
+prune docs
+prune scripts
+
+
+exclude .gitignore
+exclude .gitattributes
+prune .git
+prune .github
+exclude .editorconfig
+exclude .pre-commit-config.yaml
+exclude .flake8
+exclude .pylintrc
+exclude tox.ini
+
+prune build
+prune dist
+
+exclude *.log
+prune __pycache__
+
+

From 96313cc1d35070497040ca49413efa9a1d3c36d5 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:17:08 -0700
Subject: [PATCH 11/19] v1.1.8

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index fdb048df..fb8831fe 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.7" 
+version = "1.1.8" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From a27896371db8333a568036aab9e88ebeb9d6f002 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 11:36:28 -0700
Subject: [PATCH 12/19] v1.1.9

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index fb8831fe..9e55bbb0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.8" 
+version = "1.1.9" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 181703b48b7e2fc565f19191dce5716dcf694160 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 12:10:52 -0700
Subject: [PATCH 13/19] add widgets back

---
 src/coastseg/upload_feature_widget.py | 85 +++++++++++++++++++++++++++
 1 file changed, 85 insertions(+)
 create mode 100644 src/coastseg/upload_feature_widget.py

diff --git a/src/coastseg/upload_feature_widget.py b/src/coastseg/upload_feature_widget.py
new file mode 100644
index 00000000..c9b4bf1f
--- /dev/null
+++ b/src/coastseg/upload_feature_widget.py
@@ -0,0 +1,85 @@
+
+from typing import Set
+import ipywidgets as widgets
+from ipywidgets import VBox, Box
+from IPython.display import display
+from ipyfilechooser import FileChooser
+
+"""
+This code defines a FileUploader class, which provides a GUI for uploading GeoJSON files.
+It uses IPython widgets to create interactive elements like dropdowns, buttons, and file choosers.
+"""
+
+class FileUploader:
+    def __init__(
+        self,
+        title:str="Upload a GeoJSON File",
+        instructions:str="",
+        dropdown_options: Set[str] = set(),
+        filter_pattern: str = "*.geojson",
+        file_selection_title: str = "",
+        starting_directory: str = "",
+        max_width: int = 400,
+    ):
+        self.filenames = widgets.SelectMultiple(options=[])
+        self.remove_button = widgets.Button(
+            description="Remove",
+            button_style="danger",
+            layout=widgets.Layout(width="75px", height="28px"),
+        )
+        uploaded_files_title = widgets.HTML(value="<b>Uploaded Files</b>")
+        self.remove_widget = widgets.VBox(
+            [uploaded_files_title, widgets.HBox([self.filenames, self.remove_button])]
+        )
+
+        # Convert max_width to string form
+        self.max_width = f"{max_width}px"
+
+        # If title or instructions are empty, don't create the widget.
+        self.title = widgets.HTML(value=f"<h2>{title}</h2>") if title else None
+        self.instructions = Box(
+            [widgets.HTML(value=instructions, layout=widgets.Layout(overflow='auto', white_space='pre-wrap',max_width=self.max_width))],
+            layout=widgets.Layout(overflow='auto', width='auto')
+        ) if instructions else None
+
+        self.dropdown = widgets.Dropdown(
+            options=list(dropdown_options) if dropdown_options else ["transects", "shorelines"]
+        )
+
+        self.files_dict = {}
+        self.file_dialog = FileChooser(starting_directory)
+        self.file_dialog_row = widgets.HBox([self.file_dialog])
+
+        self._initialize_file_dialog(filter_pattern, file_selection_title)
+
+        # Register event handlers
+        self.remove_button.on_click(self.remove_file)
+
+    def _initialize_file_dialog(self, filter_pattern, file_selection_title):
+        self.file_dialog.title = f"<b>{file_selection_title}</b>"
+        self.file_dialog.filter_pattern = filter_pattern if isinstance(filter_pattern, list) else [filter_pattern]
+        self.file_dialog.register_callback(self.save_file)
+
+    def remove_file(self, button: widgets.Button):
+        selected_files = self.filenames.value
+        for selected_file in selected_files:
+            self.files_dict = {k: v for k, v in self.files_dict.items() if v != selected_file}
+        self.filenames.options = list(self.files_dict.values())
+
+    def save_file(self, selected: tuple):
+        feature = self.dropdown.value
+        self.files_dict[feature] = self.file_dialog.selected
+        self.filenames.options = list(self.files_dict.values())
+        # Clear the file selection
+        self.file_dialog.reset()
+
+    def _get_widgets_to_display(self):
+        # Order of widgets
+        return [w for w in [self.title, self.instructions, self.dropdown, self.remove_widget, self.file_dialog_row] if w is not None]
+
+    def display(self):
+        display(*self._get_widgets_to_display())
+
+    def get_FileUploader_widget(self):
+        return VBox(self._get_widgets_to_display(), layout=widgets.Layout(max_width=self.max_width))
+    

From 92f306f31c41bf639d0d61d02526cf29530f9261 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 12:11:29 -0700
Subject: [PATCH 14/19] v1.1.10

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 9e55bbb0..a554575a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.9" 
+version = "1.1.10" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 5cf85b874ac6a97e3c347c2aa9af66aed633e64a Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 13:09:00 -0700
Subject: [PATCH 15/19] #197 read roi_id to extract shorelines from config

---
 src/coastseg/zoo_model.py | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/src/coastseg/zoo_model.py b/src/coastseg/zoo_model.py
index f5a12e92..ca690cf0 100644
--- a/src/coastseg/zoo_model.py
+++ b/src/coastseg/zoo_model.py
@@ -711,10 +711,8 @@ def extract_shorelines_with_unet(
             config = file_utilities.load_json_data_from_file(
                 session_path, "config.json"
             )
-            # get the roi_id either from the recent model segmentation or the config file
-            if settings.get("sample_direc"):
-                roi_id = file_utilities.extract_roi_id(settings.get("sample_direc", ""))
-            elif config.get("roi_ids"):
+            # get the roi_id from the config file
+            if config.get("roi_ids"):
                 roi_id = config["roi_ids"][0]
             roi_settings = config[roi_id]
         except (KeyError, ValueError) as e:

From ef5193be01e233d3e93d58021534c1d024afc0ca Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Tue, 24 Oct 2023 13:18:43 -0700
Subject: [PATCH 16/19] v1.1.11

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index a554575a..9151f119 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.10" 
+version = "1.1.11" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 9120bb21fc4ac791bd7cea1f1b9100833d3ce1a4 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Thu, 26 Oct 2023 10:53:51 -0700
Subject: [PATCH 17/19] bug fix extracted shoreline widget

---
 src/coastseg/extract_shorelines_widget.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/coastseg/extract_shorelines_widget.py b/src/coastseg/extract_shorelines_widget.py
index 2ae3ee1f..50c9436c 100644
--- a/src/coastseg/extract_shorelines_widget.py
+++ b/src/coastseg/extract_shorelines_widget.py
@@ -83,7 +83,7 @@ def __init__(self, extracted_shoreline_traitlet):
             options=[],
             layout=ipywidgets.Layout(padding="0px", margin="0px"),
         )
-        self.ROI_list_widget = ipywidgets.dropdown(
+        self.ROI_list_widget = ipywidgets.Dropdown(
             description="Available ROIs",
             options=[],
             layout=ipywidgets.Layout(padding="0px", margin="0px"),

From c578d927ee0d75b1610b87e252bc6b191efc1422 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Thu, 26 Oct 2023 10:55:31 -0700
Subject: [PATCH 18/19] v1.1.12

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 9151f119..00a66a8f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "coastseg"
 dynamic = ["readme"]
-version = "1.1.11" 
+version = "1.1.12" 
 authors = [
   { name=" Sharon Fitzpatrick", email="sharon.fitzpatrick23@gmail.com" },
 ]

From 9e0cf8dee362177820f8a3b1a96680a237b227b6 Mon Sep 17 00:00:00 2001
From: Sharon Fitzpatrick <SF2309@Gmail.Com>
Date: Thu, 26 Oct 2023 15:18:33 -0700
Subject: [PATCH 19/19] add back watchable slider

---
 src/coastseg/watchable_slider.py | 131 +++++++++++++++++++++++++++++++
 1 file changed, 131 insertions(+)
 create mode 100644 src/coastseg/watchable_slider.py

diff --git a/src/coastseg/watchable_slider.py b/src/coastseg/watchable_slider.py
new file mode 100644
index 00000000..64fac44b
--- /dev/null
+++ b/src/coastseg/watchable_slider.py
@@ -0,0 +1,131 @@
+from typing import Callable
+import logging
+
+import ipywidgets
+from ipywidgets import Layout
+
+
+logger = logging.getLogger(__name__)
+
+"""
+This class is a widget that allows the user to load extracted shorelines on the map.
+"""
+
+
+# write docstring for this class
+class Extracted_Shoreline_widget(ipywidgets.VBox):
+    def __init__(self, map_interface=None):
+        # map interface that has extracted shorelines
+        self.map_interface = map_interface
+        self.map_interface.extract_shorelines_container.observe(
+            self.update_satname_widget, names="satname"
+        )
+        self.map_interface.extract_shorelines_container.observe(
+            self.update_date_widget, names="date"
+        )
+
+        self.satellite_html = ipywidgets.HTML(
+            value=f"<b>Satellite</b>: {self.map_interface.extract_shorelines_container.satname}"
+        )
+        self.date_html = ipywidgets.HTML(
+            value=f"<b>Date</b>: {self.map_interface.extract_shorelines_container.date}"
+        )
+        title_html = ipywidgets.HTML(
+            value="<h3>Load Extracted Shorelines</h3>", layout=Layout(padding="0px")
+        )
+
+        self.create_dropdown()
+        self.create_slider()
+
+        self.load_extracted_shorelines_button = ipywidgets.Button(
+            description="Load Shorelines"
+        )
+
+        # list of objects to watch
+        self._observables = []
+        # Roi information bar
+        roi_info_row = ipywidgets.HBox([self.satellite_html, self.date_html])
+        super().__init__(
+            [
+                title_html,
+                self.dropdown,
+                self.slider,
+                ipywidgets.HTML(value="<b>Extracted Shoreline Information</b>:  "),
+                roi_info_row,
+            ]
+        )
+
+    def update_satname_widget(self, change):
+        self.satellite_html.value = f"Satellite: {change['new']}"
+
+    def update_date_widget(self, change):
+        self.date_html.value = f"Date: {change['new']}"
+
+    def create_slider(self):
+        self.slider = ipywidgets.IntSlider(
+            value=self.map_interface.extract_shorelines_container.max_shorelines,
+            min=0,
+            max=1,
+            step=1,
+            description="Shoreline:",
+            disabled=True,
+            continuous_update=False,  # only load in new value when slider is released
+            orientation="horizontal",
+        )
+
+        # Function to update widget options when the traitlet changes
+        def update_extracted_shoreline_slider(change):
+            self.slider.max = change["new"]
+            if change["new"] > 0:
+                self.slider.disabled = False
+            else:
+                self.slider.disabled = True
+
+        # When the traitlet,id_container, trait 'max_shorelines' changes the update_extracted_shoreline_slider will be updated
+        self.map_interface.extract_shorelines_container.observe(
+            update_extracted_shoreline_slider, names="max_shorelines"
+        )
+        self.slider.observe(self.on_slider_change, names="value")
+
+    def create_dropdown(self):
+        self.dropdown = ipywidgets.Dropdown(
+            options=self.map_interface.id_container.ids,
+            description="Select ROI:",
+            style={"description_width": "initial"},
+        )
+
+        # Function to update widget options when the traitlet changes
+        def update_select_roi_dropdown(change):
+            self.dropdown.options = change["new"]
+
+        # When the traitlet,id_container, trait 'ids' changes the update_select_roi_dropdown will be updated
+        self.map_interface.id_container.observe(update_select_roi_dropdown, names="ids")
+        self.dropdown.observe(self.on_dropdown_change, names="value")
+
+    def set_load_extracted_shorelines_button_on_click(self, on_click: Callable):
+        self.load_extracted_shorelines_button.on_click(lambda button: on_click())
+
+    def on_slider_change(self, change):
+        # get the row number from the extracted_shoreline_slider
+        row_number = change["new"]
+        # get the extracted shoreline by the row number from the map_interface
+        roi_id = self.dropdown.value
+        self.map_interface.load_extracted_shoreline_by_id(roi_id, row_number=row_number)
+
+    def on_dropdown_change(self, change: dict):
+        """When the ROI ID in the dropdown changes load the
+        first extracted shoreline available.
+
+        Args:
+            change (dict): a change dictionary containing the new change under the key ['new'].
+            change["new"] will be an string ROI_ID
+        """
+        roi_id = change["new"]
+        # get the extracted shoreline by the row number from the map_interface
+        self.map_interface.load_extracted_shoreline_by_id(roi_id, row_number=0)
+
+    def set_satellite_html(self, satellite: str):
+        self.satellite_html.value = f"<b>Satellite</b>: {satellite} "
+
+    def set_date_html(self, date: str):
+        self.date_html.value = f"<b>Date</b>: {date} "