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get_evaluation_parameters.cwl
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get_evaluation_parameters.cwl
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#!/usr/bin/env cwl-runner
#
# Authors: Andrew Lamb
cwlVersion: v1.0
class: ExpressionTool
requirements:
- class: InlineJavascriptRequirement
inputs:
- id: evaluationid
type: string
outputs:
- id: name
type: string
- id: gold_standard_id
type: string
- id: docker_input_directory
type: string
- id: docker_param_directory
type: string
- id: score_submission
type: boolean
- id: cores
type: int
- id: ram
type: int
expression: |
${
var dict = {
"9614257": {
//Coarse_Fast_Lane
gold_standard_id: "syn20071471",
docker_input_directory: "/home/ubuntu/fast_lane_dir",
docker_param_directory: "/home/ubuntu/fast_lane_coarse_dir",
score_submission: false,
cores: 4,
ram: 15000
},
"9614252": {
//Fine_Fast_Lane
gold_standard_id: "syn20071476",
docker_input_directory: "/home/ubuntu/fast_lane_dir",
docker_param_directory: "/home/ubuntu/fast_lane_fine_dir",
score_submission: false,
cores: 4,
ram: 15000
},
"9614253": {
//R1_Coarse
gold_standard_id: "syn20564963",
docker_input_directory: "/home/ubuntu/leaderboard1_dir",
docker_param_directory: "/home/ubuntu/leaderboard1_coarse_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614255": {
//R1_Fine
gold_standard_id: "syn20564965",
docker_input_directory: "/home/ubuntu/leaderboard1_dir",
docker_param_directory: "/home/ubuntu/leaderboard1_fine_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614313": {
//R2_Coarse
gold_standard_id: "syn20564964",
docker_input_directory: "/home/ubuntu/leaderboard2_dir",
docker_param_directory: "/home/ubuntu/leaderboard2_coarse_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614314": {
//R2_Fine
gold_standard_id: "syn20564966",
docker_input_directory: "/home/ubuntu/leaderboard2_dir",
docker_param_directory: "/home/ubuntu/leaderboard2_fine_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614315": {
//R3_Coarse
gold_standard_id: "syn20968872",
docker_input_directory: "/home/ubuntu/leaderboard3_coarse_dir",
docker_param_directory: "/home/ubuntu/leaderboard3_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614316": {
//R3_Fine
gold_standard_id: "syn20968867",
docker_input_directory: "/home/ubuntu/leaderboard3_fine_dir",
docker_param_directory: "/home/ubuntu/leaderboard3_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614317": {
//Final_Coarse
gold_standard_id: "syn21820375",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_coarse_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614318": {
//Final_Fine
gold_standard_id: "syn21820376",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_fine_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614582": {
//Post_Final_Coarse
gold_standard_id: "syn22267267",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_coarse_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614583": {
//Post_Final_Fine
gold_standard_id: "syn21820376",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_fine_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614614": {
//Post_Final_Coarse2
gold_standard_id: "syn21752552",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_coarse_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614615": {
//Post_Final_Fine2
gold_standard_id: "syn21752551",
docker_input_directory: "/home/ubuntu/validation_dir",
docker_param_directory: "/home/ubuntu/validation_fine_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614625": {
//Post_Final_Coarse3
gold_standard_id: "syn22392153",
docker_input_directory: "/home/ubuntu/validation3_dir",
docker_param_directory: "/home/ubuntu/validation_coarse_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614626": {
//Post_Final_Fine3
gold_standard_id: "syn22392154",
docker_input_directory: "/home/ubuntu/validation3_dir",
docker_param_directory: "/home/ubuntu/validation_fine_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614655": {
//Post_Final_Coarse4
gold_standard_id: "syn23019511",
docker_input_directory: "/home/ubuntu/validation_coarse4_dir",
docker_param_directory: "/home/ubuntu/validation_coarse4_param_dir",
score_submission: true,
cores: 8,
ram: 30000
},
"9614656": {
//Post_Final_Fine4
gold_standard_id: "syn23019512",
docker_input_directory: "/home/ubuntu/validation_fine4_dir",
docker_param_directory: "/home/ubuntu/validation_fine4_param_dir",
score_submission: true,
cores: 8,
ram: 30000
}
};
return(dict[inputs.evaluationid])
}