diff --git a/.cookiecutterrc b/.cookiecutterrc
new file mode 100644
index 0000000..cefca42
--- /dev/null
+++ b/.cookiecutterrc
@@ -0,0 +1,33 @@
+# This file exists so you can easily regenerate your project.
+#
+# `cookiepatcher` is a convenient shim around `cookiecutter`
+# for regenerating projects (it will generate a .cookiecutterrc
+# automatically for any template). To use it:
+#
+# pip install cookiepatcher
+# cookiepatcher gh:itisfoundation/cookiecutter-osparc-service project-path
+#
+# See:
+# https://pypi.python.org/pypi/cookiepatcher
+#
+# Alternatively, you can run:
+#
+# cookiecutter --overwrite-if-exists --config-file=project-path/.cookiecutterrc gh:itisfoundation/cookiecutter-osparc-service
+#
+
+default_context:
+
+ _checkout: None
+ _output_dir: '/Users/msamdars/Code/Personal/2024-team-7/services'
+ _repo_dir: '/Users/msamdars/.cookiecutters/cookiecutter-osparc-cli-service'
+ _template: 'gh:ITISFoundation/cookiecutter-osparc-cli-service'
+ author_affiliation: 'Stanford University School of Medicine, Division of Cardiovascular Medicine'
+ author_email: 'msamdars@stanford.edu'
+ author_name: 'Mihir Samdarshi'
+ contact_email: 'msamdars@stanford.edu'
+ git_repo: 'github'
+ project_name: 'Osparc Differential Expression'
+ project_short_description: 'Easily generate differential expression results from OSparc data'
+ project_slug: 'osparc_dex_service'
+ release_date: '2024'
+ version: '0.1.0'
diff --git a/.dockerignore b/.dockerignore
new file mode 100644
index 0000000..8b9bfbc
--- /dev/null
+++ b/.dockerignore
@@ -0,0 +1,211 @@
+## Common.dockerignore
+
+*
+!src/
+!service.cli/
+!docker/
+!.osparc/
+
+# Common
+README.md
+CHANGELOG.md
+docker-compose.yml
+Dockerfile
+
+# git
+.git
+.gitattributes
+.gitignore
+.git*
+
+## Common.gitignore
+
+# output folders
+build/
+output/
+out/
+
+# temporary folders
+tmp/
+
+# explicit mark
+*ignore*
+.tmp*
+
+# vscode configuration
+.vscode
+
+# make outputs
+pytest_*.xml
+.compose*
+
+# validation folder
+!validation/**/*
+# docker ignore
+!.dockerignore
+# git ignore
+!.gitignore
+
+## Python.gitignore
+# FROM https://raw.githubusercontent.com/github/gitignore/main/Python.gitignore
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+# Usually these files are written by a python script from a template
+# before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+# For a library or package, you might want to ignore these files since the code is
+# intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+# However, in case of collaboration, if having platform-specific dependencies or dependencies
+# having no cross-platform support, pipenv may install dependencies that don't work, or not
+# install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+# This is especially recommended for binary packages to ensure reproducibility, and is more
+# commonly ignored for libraries.
+# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+# in version control.
+# https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+# and can be added to the global gitignore or merged into this file. For a more nuclear
+# option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
diff --git a/.github/workflows/check-image.yml b/.github/workflows/check-image.yml
new file mode 100644
index 0000000..61676d3
--- /dev/null
+++ b/.github/workflows/check-image.yml
@@ -0,0 +1,22 @@
+name: Build and check image
+
+on: [push, pull_request]
+
+jobs:
+ verify-image-build:
+ runs-on: ubuntu-latest
+ steps:
+ - name: Checkout repo content
+ uses: actions/checkout@v2
+ - name: ooil version
+ uses: docker://itisfoundation/ci-service-integration-library:v1.0.4
+ with:
+ args: ooil --version
+ - name: Assemble docker compose spec
+ uses: docker://itisfoundation/ci-service-integration-library:v1.0.4
+ with:
+ args: ooil compose
+ - name: Build all images if multiple
+ uses: docker://itisfoundation/ci-service-integration-library:v1.0.4
+ with:
+ args: docker compose build
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..0bc73c3
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,207 @@
+## Common.gitignore
+
+# output folders
+build/
+output/
+out/
+
+# temporary folders
+tmp/
+
+# explicit mark
+.gitignore
+.tmp*
+
+# vscode configuration
+.vscode
+
+# make outputs
+pytest_*.xml
+.compose*
+
+# validation folder
+!validation/**/*
+# docker ignore
+!.dockerignore
+# git ignore
+!.gitignore
+
+## Python.gitignore
+# FROM https://raw.githubusercontent.com/github/gitignore/main/Python.gitignore
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+# Usually these files are written by a python script from a template
+# before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+# For a library or package, you might want to ignore these files since the code is
+# intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+# However, in case of collaboration, if having platform-specific dependencies or dependencies
+# having no cross-platform support, pipenv may install dependencies that don't work, or not
+# install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+# This is especially recommended for binary packages to ensure reproducibility, and is more
+# commonly ignored for libraries.
+# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+# in version control.
+# https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+# and can be added to the global gitignore or merged into this file. For a more nuclear
+# option (not recommended) you can uncomment the following to ignore the entire idea folder.
+.idea/
+
+tmp_output
+
+# R files
+*.Rproj.user
+*.Rproj
+*.Rhistory
+*.RData
+*.Ruserdata
+
+.Rproj.user
+
+node_modules/
+
+.DS_Store
+
diff --git a/.idea/.gitignore b/.idea/.gitignore
new file mode 100644
index 0000000..0a8642f
--- /dev/null
+++ b/.idea/.gitignore
@@ -0,0 +1,10 @@
+# Default ignored files
+/shelf/
+/workspace.xml
+# Editor-based HTTP Client requests
+/httpRequests/
+# Datasource local storage ignored files
+/dataSources/
+/dataSources.local.xml
+# Zeppelin ignored files
+/ZeppelinRemoteNotebooks/
diff --git a/.idea/2024-team-7.iml b/.idea/2024-team-7.iml
new file mode 100644
index 0000000..6059a6f
--- /dev/null
+++ b/.idea/2024-team-7.iml
@@ -0,0 +1,17 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/git_toolbox_blame.xml b/.idea/git_toolbox_blame.xml
new file mode 100644
index 0000000..7dc1249
--- /dev/null
+++ b/.idea/git_toolbox_blame.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/git_toolbox_prj.xml b/.idea/git_toolbox_prj.xml
new file mode 100644
index 0000000..02b915b
--- /dev/null
+++ b/.idea/git_toolbox_prj.xml
@@ -0,0 +1,15 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml
new file mode 100644
index 0000000..c0daa98
--- /dev/null
+++ b/.idea/inspectionProfiles/Project_Default.xml
@@ -0,0 +1,49 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml
new file mode 100644
index 0000000..105ce2d
--- /dev/null
+++ b/.idea/inspectionProfiles/profiles_settings.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/misc.xml b/.idea/misc.xml
new file mode 100644
index 0000000..a384b5a
--- /dev/null
+++ b/.idea/misc.xml
@@ -0,0 +1,7 @@
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/modules.xml b/.idea/modules.xml
new file mode 100644
index 0000000..d93fe7d
--- /dev/null
+++ b/.idea/modules.xml
@@ -0,0 +1,8 @@
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/ruff.xml b/.idea/ruff.xml
new file mode 100644
index 0000000..d4ff29f
--- /dev/null
+++ b/.idea/ruff.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
new file mode 100644
index 0000000..35eb1dd
--- /dev/null
+++ b/.idea/vcs.xml
@@ -0,0 +1,6 @@
+
+
+
+
+
+
\ No newline at end of file
diff --git a/.osparc/bin/ooil.bash b/.osparc/bin/ooil.bash
new file mode 100755
index 0000000..0fa011f
--- /dev/null
+++ b/.osparc/bin/ooil.bash
@@ -0,0 +1,40 @@
+#!/bin/bash
+# http://redsymbol.net/articles/unofficial-bash-strict-mode/
+
+set -o errexit
+set -o nounset
+set -o pipefail
+IFS=$'\n\t'
+
+IMAGE_NAME="itisfoundation/service-integration:${OOIL_IMAGE_TAG:-master-github-latest}"
+WORKDIR="$(pwd)"
+
+#
+# NOTE: with --interactive --tty the command below will
+# produce colors in the outputs. The problem is that
+# . ooil.bash >VERSION will insert special color codes
+# . in the VERSION file which make it unusable as a variable
+# . when cat VERSION !!
+#
+
+run() {
+ docker run \
+ --rm \
+ --pull=always \
+ --volume="/etc/group:/etc/group:ro" \
+ --volume="/etc/passwd:/etc/passwd:ro" \
+ --user="$(id -u "$USER")":"$(id -g "$USER")" \
+ --volume "$WORKDIR":/src \
+ --workdir=/src \
+ "$IMAGE_NAME" \
+ "$@"
+}
+
+# ----------------------------------------------------------------------
+# MAIN
+#
+# USAGE
+# ./scripts/ooil.bash --help
+
+run "$@"
+# ----------------------------------------------------------------------
diff --git a/.osparc/bin/yq.bash b/.osparc/bin/yq.bash
new file mode 100755
index 0000000..43be19e
--- /dev/null
+++ b/.osparc/bin/yq.bash
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+# Define variables
+YQ_IMAGE="mikefarah/yq"
+YQ_VERSION="4.12.0"
+
+# Define function to run yq inside container
+run_yq() {
+ docker run --rm -v "$(pwd):/workdir" "$YQ_IMAGE:$YQ_VERSION" "$@"
+}
+
+# Call function with arguments
+run_yq "$@"
diff --git a/.osparc/docker-compose.overwrite.yml b/.osparc/docker-compose.overwrite.yml
new file mode 100644
index 0000000..36ce4c0
--- /dev/null
+++ b/.osparc/docker-compose.overwrite.yml
@@ -0,0 +1,5 @@
+version: "3.7"
+services:
+ osparc-differential-expression:
+ build:
+ dockerfile: docker/Dockerfile
diff --git a/.osparc/metadata.yml b/.osparc/metadata.yml
new file mode 100644
index 0000000..a5c45fc
--- /dev/null
+++ b/.osparc/metadata.yml
@@ -0,0 +1,43 @@
+name: Osparc Differential Expression
+key: simcore/services/comp/osparc-differential-expression
+type: computational
+integration-version: 1.0.0
+version: 0.1.0
+description: Easily generate differential expression results from OSparc data
+contact: msamdars@stanford.edu
+thumbnail: https://github.com/ITISFoundation/osparc-assets/blob/cb43207b6be2f4311c93cd963538d5718b41a023/assets/default-thumbnail-cookiecutter-osparc-service.png?raw=true
+authors:
+ - name: Mihir Samdarshi
+ email: msamdars@stanford.edu
+ affiliation: Stanford University School of Medicine, Division of Cardiovascular Medicine
+inputs:
+ input_folder:
+ displayOrder: 1
+ label: Input Folder
+ description: Folder containing scRNA-seq data (matrix.mtx, features.tsv, barcodes.tsv)
+ type: data:*/*
+ output_prefix:
+ displayOrder: 2
+ label: Output Prefix
+ description: Prefix for output files (optional)
+ type: string
+ min_cells:
+ displayOrder: 3
+ label: Minimum Cells
+ description: Minimum number of cells expressing a gene
+ type: integer
+ defaultValue: 3
+ min_features:
+ displayOrder: 4
+ label: Minimum Features
+ description: Minimum number of features (genes) per cell
+ type: integer
+ defaultValue: 200
+outputs:
+ output_file:
+ displayOrder: 1
+ label: Processed Data
+ description: Zipped file containing processed scRNA-seq data (AnnData objects) and metadata
+ type: data:application/zip
+ fileToKeyMap:
+ final_output.zip: output_file
\ No newline at end of file
diff --git a/.osparc/runtime.yml b/.osparc/runtime.yml
new file mode 100644
index 0000000..c0d3d9f
--- /dev/null
+++ b/.osparc/runtime.yml
@@ -0,0 +1,9 @@
+restart-policy: no-restart
+settings:
+ - name: Resources
+ type: Resources
+ value:
+ Limits:
+ NanoCPUs: 1000000000 # 100% of CPU cycles on 1 CPU
+ MemoryBytes: 2147483648 # 2 Gigabytes
+
diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..df5294d
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,126 @@
+#
+# Author: Mihir Samdarshi
+
+SHELL = /bin/sh
+.DEFAULT_GOAL := help
+
+export VCS_URL := $(shell git config --get remote.origin.url 2> /dev/null || echo unversioned repo)
+export VCS_REF := $(shell git rev-parse --short HEAD 2> /dev/null || echo unversioned repo)
+export VCS_STATUS := $(if $(shell git status -s 2> /dev/null || echo unversioned repo),'modified/untracked','clean')
+export BUILD_DATE := $(shell date -u +"%Y-%m-%dT%H:%M:%SZ")
+
+export DOCKER_IMAGE_NAME ?= osparc-differential-expression
+export DOCKER_IMAGE_TAG ?= $(shell cat VERSION 2> /dev/null || echo undefined)
+
+export COMPOSE_INPUT_DIR := ./validation/input
+export COMPOSE_OUTPUT_DIR := .tmp/output
+
+OSPARC_DIR:=$(CURDIR)/.osparc
+
+# INTEGRATION -----------------------------------------------------------------
+METADATA := .osparc/metadata.yml
+
+
+.PHONY: VERSION
+VERSION: $(METADATA) ## generates VERSION from metadata
+ # updating $@ from $<
+ @$(OSPARC_DIR)/bin/ooil.bash get-version --metadata-file $< > $@
+
+service.cli/run: $(METADATA) ## generates run from metadata
+ # Updates adapter script from metadata in $<
+ @$(OSPARC_DIR)/bin/ooil.bash run-creator --metadata $< --runscript $@
+
+docker-compose.yml: $(METADATA) ## generates docker-compose
+ # Injects metadata from $< as labels
+ @$(OSPARC_DIR)/bin/ooil.bash compose --to-spec-file $@ --metadata $<
+
+# BUILD -----------------------------------------------------------------
+
+define _docker_compose_build
+export DOCKER_BUILD_TARGET=$(if $(findstring -devel,$@),development,$(if $(findstring -cache,$@),cache,production)); \
+ docker compose -f docker-compose.yml build $(if $(findstring -nc,$@),--no-cache,);
+endef
+
+
+.PHONY: build build-devel build-nc build-devel-nc
+build build-devel build-nc build-devel-nc: VERSION docker-compose.yml service.cli/run ## builds image
+ # building image local/${DOCKER_IMAGE_NAME}...
+ @$(call _docker_compose_build)
+
+define show-meta
+ $(foreach iid,$(shell docker images */$(1):* -q | sort | uniq),\
+ docker image inspect $(iid) | jq '.[0] | .RepoTags, .ContainerConfig.Labels, .Config.Labels';)
+endef
+
+
+.PHONY: info-build
+info-build: ## displays info on the built image
+ # Built images
+ @docker images */$(DOCKER_IMAGE_NAME):*
+ # Tags and labels
+ @$(call show-meta,$(DOCKER_IMAGE_NAME))
+
+
+ docker compose build
+
+# To test built service locally -------------------------------------------------------------------------
+.PHONY: run-local
+run-local: ## runs image with local configuration
+ docker compose --file docker-compose-local.yml up
+
+.PHONY: publish-local
+publish-local: ## push to local oSPARC to test integration. It requires the oSPARC platform running on your computer, you can find more information here: https://github.com/ITISFoundation/osparc-simcore/blob/master/README.md
+ docker tag simcore/services/comp/${DOCKER_IMAGE_NAME}:${DOCKER_IMAGE_TAG} registry:5000/simcore/services/comp/$(DOCKER_IMAGE_NAME):$(DOCKER_IMAGE_TAG)
+ docker push registry:5000/simcore/services/comp/$(DOCKER_IMAGE_NAME):$(DOCKER_IMAGE_TAG)
+ @curl registry:5000/v2/_catalog | jq
+
+.PHONY: help
+help: ## this colorful help
+ @echo "Recipes for '$(notdir $(CURDIR))':"
+ @echo ""
+ @awk 'BEGIN {FS = ":.*?## "} /^[[:alpha:][:space:]_-]+:.*?## / {printf "\033[36m%-20s\033[0m %s\n", $$1, $$2}' $(MAKEFILE_LIST)
+ @echo ""
+
+
+# COOKIECUTTER -----------------------------------------------------------------
+
+.PHONY: replay
+replay: .cookiecutterrc ## re-applies cookiecutter
+ # Replaying gh:ITISFoundation/cookiecutter-osparc-cli-service ...
+ @cookiecutter --no-input --overwrite-if-exists \
+ --config-file=$< \
+ --output-dir="$(abspath $(CURDIR)/..)" \
+ "gh:ITISFoundation/cookiecutter-osparc-cli-service"
+
+
+.PHONY: info
+info: ## general info
+ # env vars: version control
+ @echo " VCS_URL : $(VCS_URL)"
+ @echo " VCS_REF : $(VCS_REF)"
+ @echo " VCS_STATUS : $(VCS_STATUS)"
+ # env vars: docker
+ @echo " DOCKER_IMAGE_TAG : $(DOCKER_IMAGE_TAG)"
+ @echo " BUILD_DATE : $(BUILD_DATE)"
+ # exe: recommended dev tools
+ @echo ' git : $(shell git --version 2>/dev/null || echo not found)'
+ @echo ' make : $(shell make --version 2>&1 | head -n 1)'
+ @echo ' jq : $(shell jq --version 2>/dev/null || echo not found z)'
+ @echo ' awk : $(shell awk -W version 2>&1 | head -n 1 2>/dev/null || echo not found)'
+ @echo ' python : $(shell python3 --version 2>/dev/null || echo not found )'
+ @echo ' docker : $(shell docker --version)'
+ @echo ' docker buildx : $(shell docker buildx version)'
+ @echo ' docker compose : $(shell docker compose --version)'
+
+# MISC -----------------------------------------------------------------
+
+
+.PHONY: clean
+git_clean_args = -dxf --exclude=.vscode/
+
+clean: ## cleans all unversioned files in project and temp files create by this makefile
+ # Cleaning unversioned
+ @git clean -n $(git_clean_args)
+ @echo -n "Are you sure? [y/N] " && read ans && [ $${ans:-N} = y ]
+ @echo -n "$(shell whoami), are you REALLY sure? [y/N] " && read ans && [ $${ans:-N} = y ]
+ @git clean $(git_clean_args)
\ No newline at end of file
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..0871510
--- /dev/null
+++ b/README.md
@@ -0,0 +1,45 @@
+# osparc_dex_service
+
+Easily generate differential expression results from OSparc data
+
+## Requirements
+- GNU Make
+- Python3
+- [``Docker``](https://docs.docker.com/get-docker/) (if you wish to build and test the service locally)
+
+## Workflow
+### Create the Service
+1. The [Dockerfile](osparc_dex_service/docker/Dockerfile) shall be modified to install the command-line tool you'd like to execute and additional dependencies
+
+All the rest is optional:
+1. The [.osparc](.osparc) is the configuration folder and source of truth for metadata: describes service info and expected inputs/outputs of the service. If you need to change the inputs/outputs of the service, description, thumbnail, etc... check the [`metadata.yml`](./.osparc/metadata.yml) file
+2. If you need to change the start-up behavior of the service, modify the [`service.cli/execute.sh`](./service.cli/execute.sh) file
+
+
+Testing:
+1. The service docker image may be built with ``make build`` (see "Useful Commands" below)
+2. The service docker image may be run locally with ``make run-local``. You'll need to edit the [input.json](./validation/input/inputs.json) to execute your command.
+
+### Publish the Service on o²S²PARC
+Once you're happy with your code:
+1. Push it to a public repository.
+2. An automated pipeline (GitHub Actions) will build the Docker image for you
+3. Wait for the GitHub pipeline to run successfully
+4. Check that the automated pipeline executes successfully
+5. Once the pipeline has run successfully, get in touch with [o²S²PARC Support](mailto:support@osparc.io), we will take care of the final steps!
+
+### Change the Service (after it has been published on o²S²PARC )
+If you wish to change your Service (e.g. add additional libraries), after it has been published on o²S²PARC, you have to **create a new version**:
+1. Go back to your repository
+2. Apply the desired changes and commit them
+3. Increase ("bump") the Service version: in your console execute: ``make version-patch``, or ``make version-minor``, or ``make version-major``
+4. Commit and push the changes to your repository
+5. Wait for the GitHub/GitLab pipelines to run successfully
+5. Once the pipeline has run successfully, get in touch with [o²S²PARC Support](mailto:support@osparc.io), we will take care of publishing the new version!
+
+
+### Useful commands
+```console
+$ make help
+$ make build # This will build an o²S²PARC-compatible image (similar to `Docker build` command)
+$ make run-local # This will start a new Docker container on your computer and run the command.
\ No newline at end of file
diff --git a/VERSION b/VERSION
new file mode 100644
index 0000000..e69de29
diff --git a/astro/.gitignore b/astro/.gitignore
deleted file mode 100644
index 016b59e..0000000
--- a/astro/.gitignore
+++ /dev/null
@@ -1,24 +0,0 @@
-# build output
-dist/
-
-# generated types
-.astro/
-
-# dependencies
-node_modules/
-
-# logs
-npm-debug.log*
-yarn-debug.log*
-yarn-error.log*
-pnpm-debug.log*
-
-# environment variables
-.env
-.env.production
-
-# macOS-specific files
-.DS_Store
-
-# jetbrains setting folder
-.idea/
diff --git a/astro/.vscode/extensions.json b/astro/.vscode/extensions.json
deleted file mode 100644
index 22a1505..0000000
--- a/astro/.vscode/extensions.json
+++ /dev/null
@@ -1,4 +0,0 @@
-{
- "recommendations": ["astro-build.astro-vscode"],
- "unwantedRecommendations": []
-}
diff --git a/astro/.vscode/launch.json b/astro/.vscode/launch.json
deleted file mode 100644
index d642209..0000000
--- a/astro/.vscode/launch.json
+++ /dev/null
@@ -1,11 +0,0 @@
-{
- "version": "0.2.0",
- "configurations": [
- {
- "command": "./node_modules/.bin/astro dev",
- "name": "Development server",
- "request": "launch",
- "type": "node-terminal"
- }
- ]
-}
diff --git a/astro/README.md b/astro/README.md
deleted file mode 100644
index 1db3fb3..0000000
--- a/astro/README.md
+++ /dev/null
@@ -1,54 +0,0 @@
-# Astro Starter Kit: Basics
-
-```sh
-npm create astro@latest -- --template basics
-```
-
-[![Open in StackBlitz](https://developer.stackblitz.com/img/open_in_stackblitz.svg)](https://stackblitz.com/github/withastro/astro/tree/latest/examples/basics)
-[![Open with CodeSandbox](https://assets.codesandbox.io/github/button-edit-lime.svg)](https://codesandbox.io/p/sandbox/github/withastro/astro/tree/latest/examples/basics)
-[![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://codespaces.new/withastro/astro?devcontainer_path=.devcontainer/basics/devcontainer.json)
-
-> 🧑🚀 **Seasoned astronaut?** Delete this file. Have fun!
-
-![just-the-basics](https://github.com/withastro/astro/assets/2244813/a0a5533c-a856-4198-8470-2d67b1d7c554)
-
-## 🚀 Project Structure
-
-Inside of your Astro project, you'll see the following folders and files:
-
-```text
-/
-├── public/
-│ └── favicon.svg
-├── src/
-│ ├── components/
-│ │ └── Card.astro
-│ ├── layouts/
-│ │ └── Layout.astro
-│ └── pages/
-│ └── index.astro
-└── package.json
-```
-
-Astro looks for `.astro` or `.md` files in the `src/pages/` directory. Each page is exposed as a route based on its file name.
-
-There's nothing special about `src/components/`, but that's where we like to put any Astro/React/Vue/Svelte/Preact components.
-
-Any static assets, like images, can be placed in the `public/` directory.
-
-## 🧞 Commands
-
-All commands are run from the root of the project, from a terminal:
-
-| Command | Action |
-| :------------------------ | :----------------------------------------------- |
-| `npm install` | Installs dependencies |
-| `npm run dev` | Starts local dev server at `localhost:4321` |
-| `npm run build` | Build your production site to `./dist/` |
-| `npm run preview` | Preview your build locally, before deploying |
-| `npm run astro ...` | Run CLI commands like `astro add`, `astro check` |
-| `npm run astro -- --help` | Get help using the Astro CLI |
-
-## 👀 Want to learn more?
-
-Feel free to check [our documentation](https://docs.astro.build) or jump into our [Discord server](https://astro.build/chat).
diff --git a/astro/astro.config.mjs b/astro/astro.config.mjs
deleted file mode 100644
index 461bd30..0000000
--- a/astro/astro.config.mjs
+++ /dev/null
@@ -1,8 +0,0 @@
-import { defineConfig } from 'astro/config';
-
-import tailwind from "@astrojs/tailwind";
-
-// https://astro.build/config
-export default defineConfig({
- integrations: [tailwind()]
-});
\ No newline at end of file
diff --git a/astro/package.json b/astro/package.json
deleted file mode 100644
index e1bc35e..0000000
--- a/astro/package.json
+++ /dev/null
@@ -1,25 +0,0 @@
-{
- "name": "astro",
- "type": "module",
- "version": "0.0.1",
- "scripts": {
- "dev": "astro dev",
- "start": "astro dev",
- "build": "astro check && astro build",
- "preview": "astro preview",
- "astro": "astro"
- },
- "dependencies": {
- "@astrojs/check": "^0.9.2",
- "@astrojs/tailwind": "^5.1.0",
- "@faker-js/faker": "^8.4.1",
- "apexcharts": "^3.52.0",
- "astro": "^4.13.3",
- "d3": "^7.9.0",
- "tailwindcss": "^3.4.9",
- "typescript": "^5.5.4"
- },
- "devDependencies": {
- "@types/d3": "^7.4.3"
- }
-}
diff --git a/astro/src/components/Card.astro b/astro/src/components/Card.astro
deleted file mode 100644
index bd6d597..0000000
--- a/astro/src/components/Card.astro
+++ /dev/null
@@ -1,61 +0,0 @@
----
-interface Props {
- title: string;
- body: string;
- href: string;
-}
-
-const { href, title, body } = Astro.props;
----
-
-
-
-
- {title}
- →
-
-
- {body}
-
-
-
-
diff --git a/astro/src/env.d.ts b/astro/src/env.d.ts
deleted file mode 100644
index f964fe0..0000000
--- a/astro/src/env.d.ts
+++ /dev/null
@@ -1 +0,0 @@
-///
diff --git a/astro/src/layouts/Layout.astro b/astro/src/layouts/Layout.astro
deleted file mode 100644
index ac3681c..0000000
--- a/astro/src/layouts/Layout.astro
+++ /dev/null
@@ -1,49 +0,0 @@
----
-interface Props {
- title: string;
-}
-
-const { title } = Astro.props;
----
-
-
-
-
-
-
-
-
-
- {title}
-
-
-
-
-
-
diff --git a/astro/src/pages/index.astro b/astro/src/pages/index.astro
deleted file mode 100644
index 1733b29..0000000
--- a/astro/src/pages/index.astro
+++ /dev/null
@@ -1,108 +0,0 @@
----
-import Layout from "../layouts/Layout.astro";
-import Card from "../components/Card.astro";
----
-
-
-
-
-
-
-
-
-
-
-
-
- Welcome to Astro
-
- To get started, open the directory src/pages
in your project.
- Code Challenge: Tweak the "Welcome to Astro" message above.
-
-
-
-
-
-
diff --git a/astro/src/pages/tsne.astro b/astro/src/pages/tsne.astro
deleted file mode 100644
index 816fb01..0000000
--- a/astro/src/pages/tsne.astro
+++ /dev/null
@@ -1,19 +0,0 @@
----
-import Layout from "../layouts/Layout.astro";
----
-
-
-
- T-SNE
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/astro/src/scripts/tsne-render copy.ts b/astro/src/scripts/tsne-render copy.ts
deleted file mode 100644
index 4e4f190..0000000
--- a/astro/src/scripts/tsne-render copy.ts
+++ /dev/null
@@ -1,94 +0,0 @@
-import * as d3 from "d3";
-import { faker } from "@faker-js/faker";
-import DATA_JSON from "/tsne_data.json";
-
-const dataJson = DATA_JSON;
-
-const baseColors = [
- "#FF0000",
- "#00FF00",
- "#0000FF",
- "#FFFF00",
- "#FF00FF",
- "#00FFFF",
- "#800000",
- "#008000",
- "#000080",
- "#808000",
- "#800080",
- "#008080",
- "#FFA500",
- "#FFC0CB",
- "#A52A2A",
- "#DDA0DD",
- "#20B2AA",
- "#B8860B",
-];
-
-const drawSVG = () => {
- const container = document.getElementById("chart");
-
- if (!container) {
- throw new Error("chart element not found");
- }
-
- const containerWidth = container.offsetWidth;
-
- const margin = { bottom: 40, left: 40, right: 40, top: 40 };
- const width = containerWidth - margin.left - margin.right;
- const height = 1000 - margin.top - margin.bottom;
-
- container.innerHTML = "";
-
- const svg = d3
- .select(container)
- .append("svg")
- .attr("width", width + margin.left + margin.right)
- .attr("height", height + margin.top + margin.bottom)
- .append("g")
- .attr("transform", `translate(${margin.left}, ${margin.top})`);
-
- const xExtent = d3.extent(dataJson, (d: any) => d.tSNE_1) as [number, number];
- const yExtent = d3.extent(dataJson, (d: any) => d.tSNE_2) as [number, number];
-
- const X = d3
- .scaleLinear()
- .domain(xExtent)
- .range([20, width - 20]);
-
- const Y = d3
- .scaleLinear()
- .domain(yExtent)
- .range([20, height - 20]);
-
- const radius = 3;
-
- dataJson.forEach((point: any, i: number) => {
- svg
- .append("circle")
- .attr("id", `circle-${i}`)
- .attr("class", `cursor-pointer cluster-${point.cluster}`)
- .attr("cx", X(point.tSNE_1))
- .attr("cy", Y(point.tSNE_2))
- .attr("r", radius)
- .attr("fill", baseColors[parseInt(point.cluster)])
- .attr("stroke", "black")
- .attr("stroke-width", 0.5)
- .on("click", () => {
- console.log(point);
- })
- .on("mouseover", () => {
- d3.selectAll(`.cluster-${point.cluster}`)
- .transition()
- .attr("r", radius + 2);
- })
- .on("mouseout", () => {
- d3.selectAll(`.cluster-${point.cluster}`)
- .transition()
- .attr("r", radius);
- });
- });
-};
-
-// Call the drawSVG function to render the graph
-drawSVG();
diff --git a/astro/src/scripts/tsne-render-old.ts b/astro/src/scripts/tsne-render-old.ts
deleted file mode 100644
index 76b82fc..0000000
--- a/astro/src/scripts/tsne-render-old.ts
+++ /dev/null
@@ -1,161 +0,0 @@
-import * as d3 from "d3";
-import tSNE from "./tsne";
-import { faker } from "@faker-js/faker";
-import DATA_JSON from "../data/tsne_data.json";
-
-const dataJson = DATA_JSON;
-
-const categories = [
- {
- color: "red",
- cluster: "1",
- },
-];
-
-const generateCategoryColors = () => {
- // Clear the categories array
- categories.length = 0;
-
- dataJson.forEach((element: any) => {
- if (!categories.find((category) => category.cluster === element.cluster)) {
- categories.push({
- color: faker.color.human(),
- cluster: element.cluster,
- });
- }
- });
-};
-generateCategoryColors();
-
-const preData = document.getElementById("pre-data");
-
-if (!preData) {
- throw new Error("pre-data element not found");
-}
-
-const points = [[0, 0]];
-
-// Clear the first point
-points.pop();
-
-for (const point of dataJson) {
- points.push([point.tSNE_1, point.tSNE_2]);
-}
-
-const model = new tSNE({
- dim: 2,
- epsilon: 10,
- perplexity: 10,
-});
-
-const euclideanDistance = (a: number[], b: number[]) => {
- let d = 0;
- for (let i = 0; i < a.length; i++) {
- let s = a[i] - b[i];
- d += s * s;
- }
- return Math.sqrt(d);
-};
-
-const dists = points.map((a) => points.map((b) => euclideanDistance(a, b)));
-
-model.initDataDist(dists);
-
-let cost = 0;
-let costPrev = 0;
-
-const dimX = 0;
-const dimY = 1;
-
-let solution: any = [];
-
-const getCategoryColor = (category: string) => {
- const categoryIndex = categories.findIndex(
- (element) => element.cluster === category
- );
- return categories[categoryIndex].color;
-};
-
-const drawSVG = () => {
- const container = document.getElementById("chart");
-
- if (!container) {
- throw new Error("chart element not found");
- }
-
- const margin = { bottom: 20, left: 20, right: 20, top: 20 };
- const width = 1200 - margin.left - margin.right;
- const height = 800;
-
- container.innerHTML = "";
-
- const svg = d3
- .select(container)
- .append("svg")
- .attr("width", width + margin.left + margin.right)
- .attr("height", height + margin.top + margin.bottom)
- .append("g")
- .attr("transform", `translate(${margin.left}, ${margin.top})`);
-
- const xExtent = d3.extent(solution, (d: any) =>
- parseFloat(d[dimX] as unknown as string)
- ) as [number, number];
- const yExtent = d3.extent(solution, (d: any) =>
- parseFloat(d[dimY] as unknown as string)
- ) as [number, number];
-
- const X = d3
- .scaleLinear()
- .domain(xExtent)
- .range([20, width - 20]);
-
- const Y = d3
- .scaleLinear()
- .domain(yExtent)
- .range([20, (height * 2) / 3 - 20]);
-
- // Draw circles for all the points in the dataset
- // Add a click event to each circle
- solution.forEach((point: any, i: number) => {
- svg
- .append("circle")
- .attr("id", `circle-${i}`)
- .attr("class", `cursor-pointer cluster-${dataJson[i].cluster}`)
- .attr("cx", X(point[dimX]))
- .attr("cy", Y(point[dimY]))
- .attr("r", 2)
- .attr("stroke", "black")
- .attr("stroke-width", 1)
- .attr("fill", "gray")
- // .attr('fill', getCategoryColor(preData[i].genre))
- .on("click", () => {
- console.log(dataJson[i]);
- })
- // Add a hover event to each circle
- // gently increase the radius of the circle
- .on("mouseover", () => {
- // Increase the radius of all the circles with the same genre
- const genre = dataJson[i].cluster;
- d3.selectAll(`.genre-${genre}`).transition().attr("r", 15);
- const color = getCategoryColor(genre);
- d3.selectAll(`.genre-${genre}`).transition().attr("fill", color);
- })
- // gently decrease the radius of the circle
- .on("mouseout", () => {
- // Decrease the radius of all the circles with the same genre
- const genre = dataJson[i].cluster;
- d3.selectAll(`.genre-${genre}`).transition().attr("r", 10);
- d3.selectAll(`.genre-${genre}`).transition().attr("fill", "gray");
- });
- });
-};
-
-do {
- cost = costPrev;
- costPrev = cost * 0.9 + 0.1 * model.step();
-
- solution = model.getSolution();
-
- drawSVG();
- await new Promise((resolve) => setTimeout(resolve, 0.1));
-} while (Math.abs(cost - costPrev) > 1e-4);
diff --git a/astro/src/scripts/tsne-render.ts b/astro/src/scripts/tsne-render.ts
deleted file mode 100644
index 469517c..0000000
--- a/astro/src/scripts/tsne-render.ts
+++ /dev/null
@@ -1,94 +0,0 @@
-import * as d3 from "d3";
-import { faker } from "@faker-js/faker";
-import DATA_JSON from "../data/tsne_data.json";
-
-const dataJson = DATA_JSON;
-
-const baseColors = [
- "#FF0000",
- "#00FF00",
- "#0000FF",
- "#FFFF00",
- "#FF00FF",
- "#00FFFF",
- "#800000",
- "#008000",
- "#000080",
- "#808000",
- "#800080",
- "#008080",
- "#FFA500",
- "#FFC0CB",
- "#A52A2A",
- "#DDA0DD",
- "#20B2AA",
- "#B8860B",
-];
-
-const drawSVG = () => {
- const container = document.getElementById("chart");
-
- if (!container) {
- throw new Error("chart element not found");
- }
-
- const containerWidth = container.offsetWidth;
-
- const margin = { bottom: 40, left: 40, right: 40, top: 40 };
- const width = containerWidth - margin.left - margin.right;
- const height = 1000 - margin.top - margin.bottom;
-
- container.innerHTML = "";
-
- const svg = d3
- .select(container)
- .append("svg")
- .attr("width", width + margin.left + margin.right)
- .attr("height", height + margin.top + margin.bottom)
- .append("g")
- .attr("transform", `translate(${margin.left}, ${margin.top})`);
-
- const xExtent = d3.extent(dataJson, (d: any) => d.tSNE_1) as [number, number];
- const yExtent = d3.extent(dataJson, (d: any) => d.tSNE_2) as [number, number];
-
- const X = d3
- .scaleLinear()
- .domain(xExtent)
- .range([20, width - 20]);
-
- const Y = d3
- .scaleLinear()
- .domain(yExtent)
- .range([20, height - 20]);
-
- const radius = 3;
-
- dataJson.forEach((point: any, i: number) => {
- svg
- .append("circle")
- .attr("id", `circle-${i}`)
- .attr("class", `cursor-pointer cluster-${point.cluster}`)
- .attr("cx", X(point.tSNE_1))
- .attr("cy", Y(point.tSNE_2))
- .attr("r", radius)
- .attr("fill", baseColors[parseInt(point.cluster)])
- .attr("stroke", "black")
- .attr("stroke-width", 0.5)
- .on("click", () => {
- console.log(point);
- })
- .on("mouseover", () => {
- d3.selectAll(`.cluster-${point.cluster}`)
- .transition()
- .attr("r", radius + 2);
- })
- .on("mouseout", () => {
- d3.selectAll(`.cluster-${point.cluster}`)
- .transition()
- .attr("r", radius);
- });
- });
-};
-
-// Call the drawSVG function to render the graph
-drawSVG();
diff --git a/astro/src/scripts/tsne.js b/astro/src/scripts/tsne.js
deleted file mode 100644
index d886575..0000000
--- a/astro/src/scripts/tsne.js
+++ /dev/null
@@ -1,390 +0,0 @@
-// src/utils/tSNE.js
-
-const tsnejs = { REVISION: "ALPHA" };
-
-var return_v = false;
-var v_val = 0.0;
-
-// utility function
-var assert = function (condition, message) {
- if (!condition) {
- throw message || "Assertion failed";
- }
-};
-
-// syntax sugar
-var getopt = function (opt, field, defaultval) {
- if (Object.prototype.hasOwnProperty.call(opt, field)) {
- return opt[field];
- } else {
- return defaultval;
- }
-};
-
-var gaussRandom = function () {
- if (return_v) {
- return_v = false;
- return v_val;
- }
- var u = 2 * Math.random() - 1;
- var v = 2 * Math.random() - 1;
- var r = u * u + v * v;
- if (r == 0 || r > 1) return gaussRandom();
- var c = Math.sqrt((-2 * Math.log(r)) / r);
- v_val = v * c; // cache this for next function call for efficiency
- return_v = true;
- return u * c;
-};
-
-// return random normal number
-var randn = function (mu, std) {
- return mu + gaussRandom() * std;
-};
-
-// utilitity that creates contiguous vector of zeros of size n
-var zeros = function (n) {
- if (typeof n === "undefined" || isNaN(n)) {
- return [];
- }
- if (typeof ArrayBuffer === "undefined") {
- // lacking browser support
- var arr = new Array(n);
- for (var i = 0; i < n; i++) {
- arr[i] = 0;
- }
- return arr;
- } else {
- return new Float64Array(n); // typed arrays are faster
- }
-};
-
-// utility that returns 2d array filled with random numbers
-// or with value s, if provided
-var randn2d = function (n, d, s) {
- var uses = typeof s !== "undefined";
- var x = [];
- for (var i = 0; i < n; i++) {
- var xhere = [];
- for (var j = 0; j < d; j++) {
- if (uses) {
- xhere.push(s);
- } else {
- xhere.push(randn(0.0, 1e-4));
- }
- }
- x.push(xhere);
- }
- return x;
-};
-
-// compute L2 distance between two vectors
-var L2 = function (x1, x2) {
- var D = x1.length;
- var d = 0;
- for (var i = 0; i < D; i++) {
- var x1i = x1[i];
- var x2i = x2[i];
- d += (x1i - x2i) * (x1i - x2i);
- }
- return d;
-};
-
-// compute pairwise distance in all vectors in X
-var xtod = function (X) {
- var N = X.length;
- var dist = zeros(N * N); // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = L2(X[i], X[j]);
- dist[i * N + j] = d;
- dist[j * N + i] = d;
- }
- }
- return dist;
-};
-
-// compute (p_{i|j} + p_{j|i})/(2n)
-var d2p = function (D, perplexity, tol) {
- var Nf = Math.sqrt(D.length); // this better be an integer
- var N = Math.floor(Nf);
- assert(N === Nf, "D should have square number of elements.");
- var Htarget = Math.log(perplexity); // target entropy of distribution
- var P = zeros(N * N); // temporary probability matrix
-
- var prow = zeros(N); // a temporary storage compartment
- for (var i = 0; i < N; i++) {
- var betamin = -Infinity;
- var betamax = Infinity;
- var beta = 1; // initial value of precision
- var done = false;
- var maxtries = 50;
-
- // perform binary search to find a suitable precision beta
- // so that the entropy of the distribution is appropriate
- var num = 0;
- while (!done) {
- //debugger;
-
- // compute entropy and kernel row with beta precision
- var psum = 0.0;
- for (var j = 0; j < N; j++) {
- var pj = Math.exp(-D[i * N + j] * beta);
- if (i === j) {
- pj = 0;
- } // we dont care about diagonals
- prow[j] = pj;
- psum += pj;
- }
- // normalize p and compute entropy
- var Hhere = 0.0;
- for (var j = 0; j < N; j++) {
- if (psum == 0) {
- var pj = 0;
- } else {
- var pj = prow[j] / psum;
- }
- prow[j] = pj;
- if (pj > 1e-7) Hhere -= pj * Math.log(pj);
- }
-
- // adjust beta based on result
- if (Hhere > Htarget) {
- // entropy was too high (distribution too diffuse)
- // so we need to increase the precision for more peaky distribution
- betamin = beta; // move up the bounds
- if (betamax === Infinity) {
- beta = beta * 2;
- } else {
- beta = (beta + betamax) / 2;
- }
- } else {
- // converse case. make distrubtion less peaky
- betamax = beta;
- if (betamin === -Infinity) {
- beta = beta / 2;
- } else {
- beta = (beta + betamin) / 2;
- }
- }
-
- // stopping conditions: too many tries or got a good precision
- num++;
- if (Math.abs(Hhere - Htarget) < tol) {
- done = true;
- }
- if (num >= maxtries) {
- done = true;
- }
- }
-
- // console.log('data point ' + i + ' gets precision ' + beta + ' after ' + num + ' binary search steps.');
- // copy over the final prow to P at row i
- for (var j = 0; j < N; j++) {
- P[i * N + j] = prow[j];
- }
- } // end loop over examples i
-
- // symmetrize P and normalize it to sum to 1 over all ij
- var Pout = zeros(N * N);
- var N2 = N * 2;
- for (var i = 0; i < N; i++) {
- for (var j = 0; j < N; j++) {
- Pout[i * N + j] = Math.max((P[i * N + j] + P[j * N + i]) / N2, 1e-100);
- }
- }
-
- return Pout;
-};
-
-function sign(x) {
- return x > 0 ? 1 : x < 0 ? -1 : 0;
-}
-
-const tSNE = function (optt) {
- let opt = optt || {};
- this.perplexity = getopt(opt, "perplexity", 30);
- this.dim = getopt(opt, "dim", 2);
- this.epsilon = getopt(opt, "epsilon", 10);
- this.iter = 0;
-};
-
-tSNE.prototype = {
- // ... (copy all the prototype methods from the original file)
-
- costGrad: function (Y) {
- var N = this.N;
- var dim = this.dim; // dim of output space
- var P = this.P;
-
- var pmul = this.iter < 100 ? 4 : 1; // trick that helps with local optima
-
- // compute current Q distribution, unnormalized first
- var Qu = zeros(N * N);
- var qsum = 0.0;
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var dsum = 0.0;
- for (var d = 0; d < dim; d++) {
- var dhere = Y[i][d] - Y[j][d];
- dsum += dhere * dhere;
- }
- var qu = 1.0 / (1.0 + dsum); // Student t-distribution
- Qu[i * N + j] = qu;
- Qu[j * N + i] = qu;
- qsum += 2 * qu;
- }
- }
- // normalize Q distribution to sum to 1
- var NN = N * N;
- var Q = zeros(NN);
- for (var q = 0; q < NN; q++) {
- Q[q] = Math.max(Qu[q] / qsum, 1e-100);
- }
-
- var cost = 0.0;
- var grad = [];
- for (var i = 0; i < N; i++) {
- var gsum = new Array(dim); // init grad for point i
- for (var d = 0; d < dim; d++) {
- gsum[d] = 0.0;
- }
- for (var j = 0; j < N; j++) {
- cost += -P[i * N + j] * Math.log(Q[i * N + j]); // accumulate cost (the non-constant portion at least...)
- var premult = 4 * (pmul * P[i * N + j] - Q[i * N + j]) * Qu[i * N + j];
- for (var d = 0; d < dim; d++) {
- gsum[d] += premult * (Y[i][d] - Y[j][d]);
- }
- }
- grad.push(gsum);
- }
-
- return { cost: cost, grad: grad };
- },
-
- // for debugging: gradient check
- debugGrad: function () {
- var N = this.N;
-
- var cg = this.costGrad(this.Y); // evaluate gradient
- var cost = cg.cost;
- var grad = cg.grad;
-
- var e = 1e-5;
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var yold = this.Y[i][d];
-
- this.Y[i][d] = yold + e;
- var cg0 = this.costGrad(this.Y);
-
- this.Y[i][d] = yold - e;
- var cg1 = this.costGrad(this.Y);
-
- var analytic = grad[i][d];
- var numerical = (cg0.cost - cg1.cost) / (2 * e);
- console.log(
- i +
- "," +
- d +
- ": gradcheck analytic: " +
- analytic +
- " vs. numerical: " +
- numerical
- );
-
- this.Y[i][d] = yold;
- }
- }
- },
- // return pointer to current solution
- getSolution: function () {
- return this.Y;
- },
- // this function takes a given distance matrix and creates
- // matrix P from them.
- // D is assumed to be provided as a list of lists, and should be symmetric
- initDataDist: function (D) {
- var N = D.length;
- assert(N > 0, " X is empty? You must have some data!");
- // convert D to a (fast) typed array version
- var dists = zeros(N * N); // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = D[i][j];
- dists[i * N + j] = d;
- dists[j * N + i] = d;
- }
- }
- this.P = d2p(dists, this.perplexity, 1e-4);
- this.N = N;
- this.initSolution(); // refresh this
- },
- // this function takes a set of high-dimensional points
- // and creates matrix P from them using gaussian kernel
- initDataRaw: function (X) {
- var N = X.length;
- var D = X[0].length;
- assert(N > 0, " X is empty? You must have some data!");
- assert(D > 0, " X[0] is empty? Where is the data?");
- var dists = xtod(X); // convert X to distances using gaussian kernel
- this.P = d2p(dists, this.perplexity, 1e-4); // attach to object
- this.N = N; // back up the size of the dataset
- this.initSolution(); // refresh this
- },
-
- // (re)initializes the solution to random
- initSolution: function () {
- // generate random solution to t-SNE
- this.Y = randn2d(this.N, this.dim); // the solution
- this.gains = randn2d(this.N, this.dim, 1.0); // step gains to accelerate progress in unchanging directions
- this.ystep = randn2d(this.N, this.dim, 0.0); // momentum accumulator
- this.iter = 0;
- },
-
- // perform a single step of optimization to improve the embedding
- step: function () {
- this.iter += 1;
- var N = this.N;
-
- var cg = this.costGrad(this.Y); // evaluate gradient
- var cost = cg.cost;
- var grad = cg.grad;
-
- // perform gradient step
- var ymean = zeros(this.dim);
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var gid = grad[i][d];
- var sid = this.ystep[i][d];
- var gainid = this.gains[i][d];
-
- // compute gain update
- var newgain = sign(gid) === sign(sid) ? gainid * 0.8 : gainid + 0.2;
- if (newgain < 0.01) newgain = 0.01; // clamp
- this.gains[i][d] = newgain; // store for next turn
-
- // compute momentum step direction
- var momval = this.iter < 250 ? 0.5 : 0.8;
- var newsid = momval * sid - this.epsilon * newgain * grad[i][d];
- this.ystep[i][d] = newsid; // remember the step we took
-
- // step!
- this.Y[i][d] += newsid;
-
- ymean[d] += this.Y[i][d]; // accumulate mean so that we can center later
- }
- }
-
- // reproject Y to be zero mean
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- this.Y[i][d] -= ymean[d] / N;
- }
- }
-
- //if(this.iter%100===0) console.log('iter ' + this.iter + ', cost: ' + cost);
- return cost; // return current cost
- },
-};
-
-export default tSNE;
diff --git a/astro/tailwind.config.mjs b/astro/tailwind.config.mjs
deleted file mode 100644
index 19f0614..0000000
--- a/astro/tailwind.config.mjs
+++ /dev/null
@@ -1,8 +0,0 @@
-/** @type {import('tailwindcss').Config} */
-export default {
- content: ['./src/**/*.{astro,html,js,jsx,md,mdx,svelte,ts,tsx,vue}'],
- theme: {
- extend: {},
- },
- plugins: [],
-}
diff --git a/astro/tsconfig.json b/astro/tsconfig.json
deleted file mode 100644
index 77da9dd..0000000
--- a/astro/tsconfig.json
+++ /dev/null
@@ -1,3 +0,0 @@
-{
- "extends": "astro/tsconfigs/strict"
-}
\ No newline at end of file
diff --git a/astro/yarn.lock b/astro/yarn.lock
deleted file mode 100644
index 007a55f..0000000
--- a/astro/yarn.lock
+++ /dev/null
@@ -1,4237 +0,0 @@
-# THIS IS AN AUTOGENERATED FILE. DO NOT EDIT THIS FILE DIRECTLY.
-# yarn lockfile v1
-
-
-"@alloc/quick-lru@^5.2.0":
- version "5.2.0"
- resolved "https://registry.yarnpkg.com/@alloc/quick-lru/-/quick-lru-5.2.0.tgz#7bf68b20c0a350f936915fcae06f58e32007ce30"
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-
-"@ampproject/remapping@^2.2.0":
- version "2.3.0"
- resolved "https://registry.yarnpkg.com/@ampproject/remapping/-/remapping-2.3.0.tgz#ed441b6fa600072520ce18b43d2c8cc8caecc7f4"
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- dependencies:
- "@jridgewell/gen-mapping" "^0.3.5"
- "@jridgewell/trace-mapping" "^0.3.24"
-
-"@astrojs/check@^0.9.2":
- version "0.9.2"
- resolved "https://registry.yarnpkg.com/@astrojs/check/-/check-0.9.2.tgz#7d5be563d1833690ae9c93209f76c44351574a55"
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- dependencies:
- "@astrojs/language-server" "^2.13.2"
- chokidar "^3.5.3"
- fast-glob "^3.3.1"
- kleur "^4.1.5"
- yargs "^17.7.2"
-
-"@astrojs/compiler@^2.10.1", "@astrojs/compiler@^2.10.2":
- version "2.10.2"
- resolved "https://registry.yarnpkg.com/@astrojs/compiler/-/compiler-2.10.2.tgz#74d06c4316cb9fe16364b23a8fc90cb456018091"
- integrity sha512-bvH+v8AirwpRWCkYJEyWYdc5Cs/BjG2ZTxIJzttHilXgfKJAdW2496KsUQKzf5j2tOHtaHXKKn9hb9WZiBGpEg==
-
-"@astrojs/internal-helpers@0.4.1":
- version "0.4.1"
- resolved "https://registry.yarnpkg.com/@astrojs/internal-helpers/-/internal-helpers-0.4.1.tgz#ceb5de49346dbdbfb6cba1b683c07fef7df56e1c"
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-
-"@astrojs/language-server@^2.13.2":
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- resolved "https://registry.yarnpkg.com/@astrojs/language-server/-/language-server-2.13.2.tgz#e49974236c40d432bc476b3261e3c47fc12c4b56"
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- dependencies:
- "@astrojs/compiler" "^2.10.2"
- "@jridgewell/sourcemap-codec" "^1.4.15"
- "@volar/kit" "~2.4.0-alpha.15"
- "@volar/language-core" "~2.4.0-alpha.15"
- "@volar/language-server" "~2.4.0-alpha.15"
- "@volar/language-service" "~2.4.0-alpha.15"
- "@volar/typescript" "~2.4.0-alpha.15"
- fast-glob "^3.2.12"
- muggle-string "^0.4.1"
- volar-service-css "0.0.59"
- volar-service-emmet "0.0.59"
- volar-service-html "0.0.59"
- volar-service-prettier "0.0.59"
- volar-service-typescript "0.0.59"
- volar-service-typescript-twoslash-queries "0.0.59"
- vscode-html-languageservice "^5.2.0"
- vscode-uri "^3.0.8"
-
-"@astrojs/markdown-remark@5.2.0":
- version "5.2.0"
- resolved "https://registry.yarnpkg.com/@astrojs/markdown-remark/-/markdown-remark-5.2.0.tgz#15955e22b74256ed0f1c2b6e98ebcc277b1abe19"
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- dependencies:
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- github-slugger "^2.0.0"
- hast-util-from-html "^2.0.1"
- hast-util-to-text "^4.0.2"
- import-meta-resolve "^4.1.0"
- mdast-util-definitions "^6.0.0"
- rehype-raw "^7.0.0"
- rehype-stringify "^10.0.0"
- remark-gfm "^4.0.0"
- remark-parse "^11.0.0"
- remark-rehype "^11.1.0"
- remark-smartypants "^3.0.2"
- shiki "^1.10.3"
- unified "^11.0.5"
- unist-util-remove-position "^5.0.0"
- unist-util-visit "^5.0.0"
- unist-util-visit-parents "^6.0.1"
- vfile "^6.0.2"
-
-"@astrojs/prism@3.1.0":
- version "3.1.0"
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- dependencies:
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-
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- dependencies:
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- postcss "^8.4.28"
- postcss-load-config "^4.0.2"
-
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- debug "^4.3.4"
- dlv "^1.1.3"
- dset "^3.1.3"
- is-docker "^3.0.0"
- is-wsl "^3.0.0"
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- dependencies:
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- resolved "https://registry.yarnpkg.com/vscode-languageserver-textdocument/-/vscode-languageserver-textdocument-1.0.12.tgz#457ee04271ab38998a093c68c2342f53f6e4a631"
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-
-vscode-languageserver-types@3.17.5, vscode-languageserver-types@^3.15.1, vscode-languageserver-types@^3.17.5:
- version "3.17.5"
- resolved "https://registry.yarnpkg.com/vscode-languageserver-types/-/vscode-languageserver-types-3.17.5.tgz#3273676f0cf2eab40b3f44d085acbb7f08a39d8a"
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-
-vscode-languageserver@^9.0.1:
- version "9.0.1"
- resolved "https://registry.yarnpkg.com/vscode-languageserver/-/vscode-languageserver-9.0.1.tgz#500aef82097eb94df90d008678b0b6b5f474015b"
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- dependencies:
- vscode-languageserver-protocol "3.17.5"
-
-vscode-nls@^5.2.0:
- version "5.2.0"
- resolved "https://registry.yarnpkg.com/vscode-nls/-/vscode-nls-5.2.0.tgz#3cb6893dd9bd695244d8a024bdf746eea665cc3f"
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-
-vscode-uri@^2.1.2:
- version "2.1.2"
- resolved "https://registry.yarnpkg.com/vscode-uri/-/vscode-uri-2.1.2.tgz#c8d40de93eb57af31f3c715dd650e2ca2c096f1c"
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-
-vscode-uri@^3.0.8:
- version "3.0.8"
- resolved "https://registry.yarnpkg.com/vscode-uri/-/vscode-uri-3.0.8.tgz#1770938d3e72588659a172d0fd4642780083ff9f"
- integrity sha512-AyFQ0EVmsOZOlAnxoFOGOq1SQDWAB7C6aqMGS23svWAllfOaxbuFvcT8D1i8z3Gyn8fraVeZNNmN6e9bxxXkKw==
-
-web-namespaces@^2.0.0:
- version "2.0.1"
- resolved "https://registry.yarnpkg.com/web-namespaces/-/web-namespaces-2.0.1.tgz#1010ff7c650eccb2592cebeeaf9a1b253fd40692"
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-
-which-pm-runs@^1.1.0:
- version "1.1.0"
- resolved "https://registry.yarnpkg.com/which-pm-runs/-/which-pm-runs-1.1.0.tgz#35ccf7b1a0fce87bd8b92a478c9d045785d3bf35"
- integrity sha512-n1brCuqClxfFfq/Rb0ICg9giSZqCS+pLtccdag6C2HyufBrh3fBOiy9nb6ggRMvWOVH5GrdJskj5iGTZNxd7SA==
-
-which-pm@^3.0.0:
- version "3.0.0"
- resolved "https://registry.yarnpkg.com/which-pm/-/which-pm-3.0.0.tgz#78f2088b345a63cec9f838b390332fb1e680221f"
- integrity sha512-ysVYmw6+ZBhx3+ZkcPwRuJi38ZOTLJJ33PSHaitLxSKUMsh0LkKd0nC69zZCwt5D+AYUcMK2hhw4yWny20vSGg==
- dependencies:
- load-yaml-file "^0.2.0"
-
-which@^2.0.1:
- version "2.0.2"
- resolved "https://registry.yarnpkg.com/which/-/which-2.0.2.tgz#7c6a8dd0a636a0327e10b59c9286eee93f3f51b1"
- integrity sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==
- dependencies:
- isexe "^2.0.0"
-
-widest-line@^4.0.1:
- version "4.0.1"
- resolved "https://registry.yarnpkg.com/widest-line/-/widest-line-4.0.1.tgz#a0fc673aaba1ea6f0a0d35b3c2795c9a9cc2ebf2"
- integrity sha512-o0cyEG0e8GPzT4iGHphIOh0cJOV8fivsXxddQasHPHfoZf1ZexrfeA21w2NaEN1RHE+fXlfISmOE8R9N3u3Qig==
- dependencies:
- string-width "^5.0.1"
-
-"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
- version "7.0.0"
- resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
- integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
- dependencies:
- ansi-styles "^4.0.0"
- string-width "^4.1.0"
- strip-ansi "^6.0.0"
-
-wrap-ansi@^8.1.0:
- version "8.1.0"
- resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-8.1.0.tgz#56dc22368ee570face1b49819975d9b9a5ead214"
- integrity sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==
- dependencies:
- ansi-styles "^6.1.0"
- string-width "^5.0.1"
- strip-ansi "^7.0.1"
-
-y18n@^5.0.5:
- version "5.0.8"
- resolved "https://registry.yarnpkg.com/y18n/-/y18n-5.0.8.tgz#7f4934d0f7ca8c56f95314939ddcd2dd91ce1d55"
- integrity sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==
-
-yallist@^3.0.2:
- version "3.1.1"
- resolved "https://registry.yarnpkg.com/yallist/-/yallist-3.1.1.tgz#dbb7daf9bfd8bac9ab45ebf602b8cbad0d5d08fd"
- integrity sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==
-
-yaml@^2.3.4:
- version "2.5.0"
- resolved "https://registry.yarnpkg.com/yaml/-/yaml-2.5.0.tgz#c6165a721cf8000e91c36490a41d7be25176cf5d"
- integrity sha512-2wWLbGbYDiSqqIKoPjar3MPgB94ErzCtrNE1FdqGuaO0pi2JGjmE8aW8TDZwzU7vuxcGRdL/4gPQwQ7hD5AMSw==
-
-yargs-parser@^21.1.1:
- version "21.1.1"
- resolved "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-21.1.1.tgz#9096bceebf990d21bb31fa9516e0ede294a77d35"
- integrity sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==
-
-yargs@^17.7.2:
- version "17.7.2"
- resolved "https://registry.yarnpkg.com/yargs/-/yargs-17.7.2.tgz#991df39aca675a192b816e1e0363f9d75d2aa269"
- integrity sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==
- dependencies:
- cliui "^8.0.1"
- escalade "^3.1.1"
- get-caller-file "^2.0.5"
- require-directory "^2.1.1"
- string-width "^4.2.3"
- y18n "^5.0.5"
- yargs-parser "^21.1.1"
-
-yocto-queue@^1.1.1:
- version "1.1.1"
- resolved "https://registry.yarnpkg.com/yocto-queue/-/yocto-queue-1.1.1.tgz#fef65ce3ac9f8a32ceac5a634f74e17e5b232110"
- integrity sha512-b4JR1PFR10y1mKjhHY9LaGo6tmrgjit7hxVIeAmyMw3jegXR4dhYqLaQF5zMXZxY7tLpMyJeLjr1C4rLmkVe8g==
-
-zod-to-json-schema@^3.23.2:
- version "3.23.2"
- resolved "https://registry.yarnpkg.com/zod-to-json-schema/-/zod-to-json-schema-3.23.2.tgz#bc7e379c8050462538383e382964c03d8fe008f9"
- integrity sha512-uSt90Gzc/tUfyNqxnjlfBs8W6WSGpNBv0rVsNxP/BVSMHMKGdthPYff4xtCHYloJGM0CFxFsb3NbC0eqPhfImw==
-
-zod@^3.23.8:
- version "3.23.8"
- resolved "https://registry.yarnpkg.com/zod/-/zod-3.23.8.tgz#e37b957b5d52079769fb8097099b592f0ef4067d"
- integrity sha512-XBx9AXhXktjUqnepgTiE5flcKIYWi/rme0Eaj+5Y0lftuGBq+jyRu/md4WnuxqgP1ubdpNCsYEYPxrzVHD8d6g==
-
-zwitch@^2.0.0, zwitch@^2.0.4:
- version "2.0.4"
- resolved "https://registry.yarnpkg.com/zwitch/-/zwitch-2.0.4.tgz#c827d4b0acb76fc3e685a4c6ec2902d51070e9d7"
- integrity sha512-bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A==
diff --git a/docker-compose-local.yml b/docker-compose-local.yml
new file mode 100644
index 0000000..8eb99d7
--- /dev/null
+++ b/docker-compose-local.yml
@@ -0,0 +1,10 @@
+services:
+ osparc_dex_service:
+ platform: linux/amd64
+ image: simcore/services/comp/osparc_dex_service:0.1.0
+ environment:
+ - INPUT_FOLDER=/tmp/inputs
+ - OUTPUT_FOLDER=/tmp/outputs
+ volumes:
+ - ${PWD}/validation/input:/tmp/inputs
+ - ${PWD}/validation/output:/tmp/outputs
\ No newline at end of file
diff --git a/docker/Dockerfile b/docker/Dockerfile
new file mode 100644
index 0000000..b33f80a
--- /dev/null
+++ b/docker/Dockerfile
@@ -0,0 +1,81 @@
+# Docker base image, change if needed
+FROM ubuntu:24.04 AS base
+
+ENV NODE_VERSION="22.x" \
+ ARCH="amd64" \
+ DEBIAN_FRONTEND="noninteractive" \
+ LC_ALL="C.UTF-8" \
+ LANG="C.UTF-8" \
+ LANGUAGE="C.UTF-8"
+
+# ------------------------------------------------------------------------------------
+# Install system packages and R
+RUN apt-get update \
+ && apt-get -y install --no-install-recommends \
+ curl jq zip adduser apt-transport-https ca-certificates gnupg \
+ libcurl4-openssl-dev libssl-dev libxml2-dev libhdf5-dev python3 python3-pip \
+ libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev \
+ && echo "deb https://cloud.r-project.org/bin/linux/ubuntu noble-cran40/" >> /etc/apt/sources.list \
+ && echo "deb [arch=$ARCH signed-by=/usr/share/keyrings/nodesource.gpg] https://deb.nodesource.com/node_$NODE_VERSION nodistro main" | tee /etc/apt/sources.list.d/nodesource.list > /dev/null \
+ && echo "Package: nodejs" | tee /etc/apt/preferences.d/nodejs > /dev/null \
+ && echo "Pin: origin deb.nodesource.com" | tee -a /etc/apt/preferences.d/nodejs > /dev/null \
+ && echo "Pin-Priority: 600" | tee -a /etc/apt/preferences.d/nodejs > /dev/null \
+ && curl -fsSL "https://deb.nodesource.com/gpgkey/nodesource-repo.gpg.key" | gpg --dearmor -o /usr/share/keyrings/nodesource.gpg \
+ && curl -fsSL "https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc" | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \
+ && apt-get update \
+ && apt-get -y install --no-install-recommends \
+ r-base r-base-dev \
+ && rm -rf /var/lib/apt/lists/*
+# ------------------------------------------------------------------------------------
+
+# ------------------------------------------------------------------------------------
+# oSPARC compatibility, do not modify
+# simcore-user uid=8004(${SC_USER_NAME}) gid=8004(${SC_USER_NAME}) groups=8004(${SC_USER_NAME})
+ENV SC_USER_ID=8004
+ENV SC_USER_NAME=scu
+RUN adduser --uid ${SC_USER_ID} --disabled-password --gecos "" --shell /bin/sh --home /home/${SC_USER_NAME} ${SC_USER_NAME}
+# ------------------------------------------------------------------------------------
+
+# ------------------------------------------------------------------------------------
+# Install Bioconductor
+RUN R -e "install.packages('BiocManager', repos='http://cran.rstudio.com/')"
+# Install required R packages available on CRAN
+RUN R -e "install.packages(c('Seurat', 'jsonlite', 'optparse', 'ggplot2', 'devtools', 'dplyr', 'msigdbr'), repos='http://cran.rstudio.com/')"
+# Install required R packages available on Bioconductor
+RUN R -e "BiocManager::install('fgsea')"
+# Install presto for speed-ups to Seurat
+RUN R -e "library(devtools); devtools::install_github('immunogenomics/presto')"
+
+# Remove the Python warning about system installs since we're in a docker image
+RUN rm /usr/lib/python*/EXTERNALLY-MANAGED
+# Install required Python packages
+RUN pip3 install pandas
+# ------------------------------------------------------------------------------------
+
+# ------------------------------------------------------------------------------------
+# Copy and set up R script
+COPY --chown=${SC_USER_NAME}:${SC_USER_NAME} src/pipeline/dex.R src/pipeline/json_convert.py /home/${SC_USER_NAME}/
+COPY --chown=${SC_USER_NAME}:${SC_USER_NAME} src/static /home/${SC_USER_NAME}/static
+RUN chmod +x /home/${SC_USER_NAME}/dex.R
+# ------------------------------------------------------------------------------------
+
+# --------------------------------- Final setup --------------------------------------
+# Do not modify
+
+ENV INPUT_FOLDER="/input" \
+ OUTPUT_FOLDER="/output"
+
+WORKDIR /home/${SC_USER_NAME}
+
+# copy docker bootup scripts
+COPY --chown=${SC_USER_NAME}:${SC_USER_NAME} docker/*.sh docker/
+
+# copy simcore service cli
+COPY --chown=${SC_USER_NAME}:${SC_USER_NAME} service.cli/ service.cli/
+# necessary to be able to call run directly without sh in front
+ENV PATH="/home/${SC_USER_NAME}/service.cli:${PATH}"
+
+ENTRYPOINT [ "/bin/sh", "docker/entrypoint.sh", "/bin/sh", "-c" ]
+CMD ["run"]
+# -------------------------------------------------------------------------------------
+
diff --git a/docker/entrypoint.sh b/docker/entrypoint.sh
new file mode 100755
index 0000000..3b10f66
--- /dev/null
+++ b/docker/entrypoint.sh
@@ -0,0 +1,72 @@
+#!/bin/sh
+set -o errexit
+set -o nounset
+
+IFS=$(printf '\n\t')
+# This entrypoint script:
+#
+# - Executes *inside* of the container upon start as --user [default root]
+# - Notice that the container *starts* as --user [default root] but
+# *runs* as non-root user [$SC_USER_NAME]
+#
+echo User : "$(id "$(whoami)")"
+echo Workdir : "$(pwd)"
+
+
+# expect input/output folders to be mounted
+stat "${INPUT_FOLDER}" > /dev/null 2>&1 || \
+ (echo "ERROR: You must mount '${INPUT_FOLDER}' to deduce user and group ids" && exit 1)
+stat "${OUTPUT_FOLDER}" > /dev/null 2>&1 || \
+ (echo "ERROR: You must mount '${OUTPUT_FOLDER}' to deduce user and group ids" && exit 1)
+
+# NOTE: expects docker run ... -v /path/to/input/folder:${INPUT_FOLDER}
+# check input/output folders are owned by the same user
+if [ "$(stat -c %u "${INPUT_FOLDER}")" -ne "$(stat -c %u "${OUTPUT_FOLDER}")" ]
+then
+ echo "ERROR: '${INPUT_FOLDER}' and '${OUTPUT_FOLDER}' have different user id's. not allowed" && exit 1
+fi
+# check input/outputfolders are owned by the same group
+if [ "$(stat -c %g "${INPUT_FOLDER}")" -ne "$(stat -c %g "${OUTPUT_FOLDER}")" ]
+then
+ echo "ERROR: '${INPUT_FOLDER}' and '${OUTPUT_FOLDER}' have different group id's. not allowed" && exit 1
+fi
+
+echo "setting correct user id/group id..."
+HOST_USERID=$(stat --format=%u "${INPUT_FOLDER}")
+HOST_GROUPID=$(stat --format=%g "${INPUT_FOLDER}")
+CONT_GROUPNAME=$(getent group "${HOST_GROUPID}" | cut --delimiter=: --fields=1)
+if [ "$HOST_USERID" -eq 0 ]
+then
+ echo "Warning: Folder mounted owned by root user... adding $SC_USER_NAME to root..."
+ adduser "$SC_USER_NAME" root
+else
+ echo "Folder mounted owned by user $HOST_USERID:$HOST_GROUPID-'$CONT_GROUPNAME'..."
+ # take host's credentials in $SC_USER_NAME
+ if [ -z "$CONT_GROUPNAME" ]
+ then
+ echo "Creating new group my$SC_USER_NAME"
+ CONT_GROUPNAME=my$SC_USER_NAME
+ addgroup --gid "$HOST_GROUPID" "$CONT_GROUPNAME"
+ else
+ echo "group already exists"
+ fi
+ echo "adding $SC_USER_NAME to group $CONT_GROUPNAME..."
+ adduser "$SC_USER_NAME" "$CONT_GROUPNAME"
+
+ echo "changing $SC_USER_NAME:$SC_USER_NAME ($SC_USER_ID:$SC_USER_ID) to $SC_USER_NAME:$CONT_GROUPNAME ($HOST_USERID:$HOST_GROUPID)"
+ usermod --uid "$HOST_USERID" --gid "$HOST_GROUPID" "$SC_USER_NAME"
+
+ echo "Changing group properties of files around from $SC_USER_ID to group $CONT_GROUPNAME"
+ find / \( -path /proc -o -path /sys \) -prune -o -group "$SC_USER_ID" -exec chgrp --no-dereference "$CONT_GROUPNAME" {} \;
+ # change user property of files already around
+ echo "Changing ownership properties of files around from $SC_USER_ID to group $CONT_GROUPNAME"
+ find / \( -path /proc -o -path /sys \) -prune -o -user "$SC_USER_ID" -exec chown --no-dereference "$SC_USER_NAME" {} \;
+fi
+
+echo "Starting $* ..."
+echo " $SC_USER_NAME rights : $(id "$SC_USER_NAME")"
+echo " local dir : $(ls -al)"
+echo " input dir : $(ls -al "${INPUT_FOLDER}")"
+echo " output dir : $(ls -al "${OUTPUT_FOLDER}")"
+
+su --command "export PATH=${PATH}:/home/$SC_USER_NAME/service.cli; $*" "$SC_USER_NAME"
\ No newline at end of file
diff --git a/frontend/.eslintrc.cjs b/frontend/.eslintrc.cjs
deleted file mode 100644
index 5a823c2..0000000
--- a/frontend/.eslintrc.cjs
+++ /dev/null
@@ -1,64 +0,0 @@
-/* eslint-env node */
-require('@rushstack/eslint-patch/modern-module-resolution')
-
-module.exports = {
- extends: [
- 'plugin:vue/vue3-essential',
- 'eslint:recommended',
- '@vue/eslint-config-typescript',
- '@vue/eslint-config-prettier'
- ],
- overrides: [
- {
- extends: ['plugin:cypress/recommended'],
- files: ['cypress/e2e/**.{cy,spec}.{js,ts,jsx,tsx}']
- }
- ],
- parserOptions: {
- ecmaVersion: 'latest'
- },
- plugins: ['unused-imports', 'simple-import-sort', 'prettier', 'sort-keys-custom-order'],
- root: true,
- rules: {
- '@typescript-eslint/no-unused-vars': [
- 'warn', // or "error"
- {
- argsIgnorePattern: '^_',
- caughtErrorsIgnorePattern: '^_',
- varsIgnorePattern: '^_'
- }
- ],
- 'no-console': process.env.NODE_ENV === 'production' ? 'warn' : 'off',
- 'no-debugger': process.env.NODE_ENV === 'production' ? 'warn' : 'off',
- 'no-unused-vars': 'off',
- 'prettier/prettier': [
- 'error',
- {
- endOfLine: 'auto'
- }
- ],
- 'simple-import-sort/exports': 'error',
- 'simple-import-sort/imports': 'error',
- // For JS objects sorting
- 'sort-keys-custom-order/object-keys': [
- 'error',
- { orderedKeys: ['id', 'username', 'name', 'title', '50', 'path'] }
- ],
- // For TS types sorting
- 'sort-keys-custom-order/type-keys': [
- 'error',
- { orderedKeys: ['id', 'username', 'name', 'title', '50', 'path'] }
- ],
- 'unused-imports/no-unused-imports': 'error',
- 'unused-imports/no-unused-vars': [
- 'warn',
- {
- args: 'after-used',
- argsIgnorePattern: '^_',
- vars: 'all',
- varsIgnorePattern: '^_'
- }
- ],
- 'vue/padding-line-between-tags': ['error', [{ blankLine: 'always', next: '*', prev: '*' }]]
- }
-}
diff --git a/frontend/.gitignore b/frontend/.gitignore
deleted file mode 100644
index 8ee54e8..0000000
--- a/frontend/.gitignore
+++ /dev/null
@@ -1,30 +0,0 @@
-# Logs
-logs
-*.log
-npm-debug.log*
-yarn-debug.log*
-yarn-error.log*
-pnpm-debug.log*
-lerna-debug.log*
-
-node_modules
-.DS_Store
-dist
-dist-ssr
-coverage
-*.local
-
-/cypress/videos/
-/cypress/screenshots/
-
-# Editor directories and files
-.vscode/*
-!.vscode/extensions.json
-.idea
-*.suo
-*.ntvs*
-*.njsproj
-*.sln
-*.sw?
-
-*.tsbuildinfo
diff --git a/frontend/.prettierrc.json b/frontend/.prettierrc.json
deleted file mode 100644
index 66e2335..0000000
--- a/frontend/.prettierrc.json
+++ /dev/null
@@ -1,8 +0,0 @@
-{
- "$schema": "https://json.schemastore.org/prettierrc",
- "semi": false,
- "tabWidth": 2,
- "singleQuote": true,
- "printWidth": 100,
- "trailingComma": "none"
-}
\ No newline at end of file
diff --git a/frontend/.vscode/extensions.json b/frontend/.vscode/extensions.json
deleted file mode 100644
index 93ea3e7..0000000
--- a/frontend/.vscode/extensions.json
+++ /dev/null
@@ -1,7 +0,0 @@
-{
- "recommendations": [
- "Vue.volar",
- "dbaeumer.vscode-eslint",
- "esbenp.prettier-vscode"
- ]
-}
diff --git a/frontend/README.md b/frontend/README.md
deleted file mode 100644
index 9b4c74c..0000000
--- a/frontend/README.md
+++ /dev/null
@@ -1,39 +0,0 @@
-# frontend
-
-This template should help get you started developing with Vue 3 in Vite.
-
-## Recommended IDE Setup
-
-[VSCode](https://code.visualstudio.com/) + [Volar](https://marketplace.visualstudio.com/items?itemName=Vue.volar) (and disable Vetur).
-
-## Type Support for `.vue` Imports in TS
-
-TypeScript cannot handle type information for `.vue` imports by default, so we replace the `tsc` CLI with `vue-tsc` for type checking. In editors, we need [Volar](https://marketplace.visualstudio.com/items?itemName=Vue.volar) to make the TypeScript language service aware of `.vue` types.
-
-## Customize configuration
-
-See [Vite Configuration Reference](https://vitejs.dev/config/).
-
-## Project Setup
-
-```sh
-npm install
-```
-
-### Compile and Hot-Reload for Development
-
-```sh
-npm run dev
-```
-
-### Type-Check, Compile and Minify for Production
-
-```sh
-npm run build
-```
-
-### Lint with [ESLint](https://eslint.org/)
-
-```sh
-npm run lint
-```
diff --git a/frontend/auto-imports.d.ts b/frontend/auto-imports.d.ts
deleted file mode 100644
index 7ea5188..0000000
--- a/frontend/auto-imports.d.ts
+++ /dev/null
@@ -1,82 +0,0 @@
-/* eslint-disable */
-/* prettier-ignore */
-// @ts-nocheck
-// noinspection JSUnusedGlobalSymbols
-// Generated by unplugin-auto-import
-export {}
-declare global {
- const EffectScope: typeof import('vue')['EffectScope']
- const axios: typeof import('axios')['default']
- const computed: typeof import('vue')['computed']
- const createApp: typeof import('vue')['createApp']
- const customRef: typeof import('vue')['customRef']
- const defineAsyncComponent: typeof import('vue')['defineAsyncComponent']
- const defineComponent: typeof import('vue')['defineComponent']
- const effectScope: typeof import('vue')['effectScope']
- const getCurrentInstance: typeof import('vue')['getCurrentInstance']
- const getCurrentScope: typeof import('vue')['getCurrentScope']
- const h: typeof import('vue')['h']
- const inject: typeof import('vue')['inject']
- const isProxy: typeof import('vue')['isProxy']
- const isReactive: typeof import('vue')['isReactive']
- const isReadonly: typeof import('vue')['isReadonly']
- const isRef: typeof import('vue')['isRef']
- const markRaw: typeof import('vue')['markRaw']
- const nextTick: typeof import('vue')['nextTick']
- const onActivated: typeof import('vue')['onActivated']
- const onBeforeMount: typeof import('vue')['onBeforeMount']
- const onBeforeRouteLeave: typeof import('vue-router')['onBeforeRouteLeave']
- const onBeforeRouteUpdate: typeof import('vue-router')['onBeforeRouteUpdate']
- const onBeforeUnmount: typeof import('vue')['onBeforeUnmount']
- const onBeforeUpdate: typeof import('vue')['onBeforeUpdate']
- const onDeactivated: typeof import('vue')['onDeactivated']
- const onErrorCaptured: typeof import('vue')['onErrorCaptured']
- const onMounted: typeof import('vue')['onMounted']
- const onRenderTracked: typeof import('vue')['onRenderTracked']
- const onRenderTriggered: typeof import('vue')['onRenderTriggered']
- const onScopeDispose: typeof import('vue')['onScopeDispose']
- const onServerPrefetch: typeof import('vue')['onServerPrefetch']
- const onUnmounted: typeof import('vue')['onUnmounted']
- const onUpdated: typeof import('vue')['onUpdated']
- const provide: typeof import('vue')['provide']
- const reactive: typeof import('vue')['reactive']
- const readonly: typeof import('vue')['readonly']
- const ref: typeof import('vue')['ref']
- const resolveComponent: typeof import('vue')['resolveComponent']
- const shallowReactive: typeof import('vue')['shallowReactive']
- const shallowReadonly: typeof import('vue')['shallowReadonly']
- const shallowRef: typeof import('vue')['shallowRef']
- const toRaw: typeof import('vue')['toRaw']
- const toRef: typeof import('vue')['toRef']
- const toRefs: typeof import('vue')['toRefs']
- const toValue: typeof import('vue')['toValue']
- const triggerRef: typeof import('vue')['triggerRef']
- const unref: typeof import('vue')['unref']
- const useAttrs: typeof import('vue')['useAttrs']
- const useCssModule: typeof import('vue')['useCssModule']
- const useCssVars: typeof import('vue')['useCssVars']
- const useDialog: typeof import('naive-ui')['useDialog']
- const useLink: typeof import('vue-router')['useLink']
- const useLoadingBar: typeof import('naive-ui')['useLoadingBar']
- const useMessage: typeof import('naive-ui')['useMessage']
- const useMouse: typeof import('@vueuse/core')['useMouse']
- const useMyFetch: typeof import('@vueuse/core')['useFetch']
- const useNotification: typeof import('naive-ui')['useNotification']
- const usePush: typeof import('notivue')['usePush']
- const useRoute: typeof import('vue-router')['useRoute']
- const useRouter: typeof import('vue-router')['useRouter']
- const useSlots: typeof import('vue')['useSlots']
- const watch: typeof import('vue')['watch']
- const watchEffect: typeof import('vue')['watchEffect']
- const watchPostEffect: typeof import('vue')['watchPostEffect']
- const watchSyncEffect: typeof import('vue')['watchSyncEffect']
-}
-// for type re-export
-declare global {
- // @ts-ignore
- export type { Component, ComponentPublicInstance, ComputedRef, ExtractDefaultPropTypes, ExtractPropTypes, ExtractPublicPropTypes, InjectionKey, PropType, Ref, VNode, WritableComputedRef } from 'vue'
- import('vue')
- // @ts-ignore
- export type { FormInst, FormRules, SelectOption, FormItemRule } from 'naive-ui'
- import('naive-ui')
-}
diff --git a/frontend/components.d.ts b/frontend/components.d.ts
deleted file mode 100644
index 37791bc..0000000
--- a/frontend/components.d.ts
+++ /dev/null
@@ -1,30 +0,0 @@
-/* eslint-disable */
-// @ts-nocheck
-// Generated by unplugin-vue-components
-// Read more: https://github.com/vuejs/core/pull/3399
-export {}
-
-/* prettier-ignore */
-declare module 'vue' {
- export interface GlobalComponents {
- HelloWorld: typeof import('./src/components/HelloWorld.vue')['default']
- IconCommunity: typeof import('./src/components/icons/IconCommunity.vue')['default']
- IconDocumentation: typeof import('./src/components/icons/IconDocumentation.vue')['default']
- IconEcosystem: typeof import('./src/components/icons/IconEcosystem.vue')['default']
- IconSupport: typeof import('./src/components/icons/IconSupport.vue')['default']
- IconTooling: typeof import('./src/components/icons/IconTooling.vue')['default']
- NButton: typeof import('naive-ui')['NButton']
- NCollapse: typeof import('naive-ui')['NCollapse']
- NCollapseItem: typeof import('naive-ui')['NCollapseItem']
- NConfigProvider: typeof import('naive-ui')['NConfigProvider']
- NDialogProvider: typeof import('naive-ui')['NDialogProvider']
- NDivider: typeof import('naive-ui')['NDivider']
- NFlex: typeof import('naive-ui')['NFlex']
- NMessageProvider: typeof import('naive-ui')['NMessageProvider']
- NSpace: typeof import('naive-ui')['NSpace']
- RouterLink: typeof import('vue-router')['RouterLink']
- RouterView: typeof import('vue-router')['RouterView']
- TheWelcome: typeof import('./src/components/TheWelcome.vue')['default']
- WelcomeItem: typeof import('./src/components/WelcomeItem.vue')['default']
- }
-}
diff --git a/frontend/env.d.ts b/frontend/env.d.ts
deleted file mode 100644
index 11f02fe..0000000
--- a/frontend/env.d.ts
+++ /dev/null
@@ -1 +0,0 @@
-///
diff --git a/frontend/index.html b/frontend/index.html
deleted file mode 100644
index a888544..0000000
--- a/frontend/index.html
+++ /dev/null
@@ -1,13 +0,0 @@
-
-
-
-
-
-
- Vite App
-
-
-
-
-
-
diff --git a/frontend/package.json b/frontend/package.json
deleted file mode 100644
index c69adec..0000000
--- a/frontend/package.json
+++ /dev/null
@@ -1,64 +0,0 @@
-{
- "name": "frontend",
- "version": "0.0.0",
- "private": true,
- "type": "module",
- "scripts": {
- "dev": "vite --port 3000",
- "build": "run-p type-check \"build-only {@}\" --",
- "preview": "vite preview",
- "build-only": "vite build",
- "type-check": "vue-tsc --build --force",
- "lint": "eslint . --ext .vue,.js,.jsx,.cjs,.mjs,.ts,.tsx,.cts,.mts --fix --ignore-path .gitignore",
- "format": "prettier --write src/",
- "dev:serve": "run-p dev dev:server",
- "dev:server": "tsx ./server.ts",
- "static:build": "vite build --base='./'"
- },
- "dependencies": {
- "apexcharts": "^3.52.0",
- "consola": "^3.2.3",
- "d3": "^7.9.0",
- "d3-delaunay": "^6.0.4",
- "pinia": "^2.1.7",
- "unimport": "^3.10.0",
- "vue": "^3.4.29",
- "vue-router": "^4.4.3"
- },
- "devDependencies": {
- "@faker-js/faker": "^8.4.1",
- "@hapi/hapi": "^21.3.10",
- "@rushstack/eslint-patch": "^1.8.0",
- "@tsconfig/node20": "^20.1.4",
- "@types/d3": "^7.4.3",
- "@types/node": "^20.14.5",
- "@unhead/vue": "^1.9.16",
- "@vitejs/plugin-vue": "^5.0.5",
- "@vitejs/plugin-vue-jsx": "^4.0.0",
- "@vue/eslint-config-prettier": "^9.0.0",
- "@vue/eslint-config-typescript": "^13.0.0",
- "@vue/tsconfig": "^0.5.1",
- "autoprefixer": "^10.4.20",
- "eslint": "^8.57.0",
- "eslint-plugin-cypress": "^3.4.0",
- "eslint-plugin-simple-import-sort": "^12.1.1",
- "eslint-plugin-sort-keys-custom-order": "^2.1.0",
- "eslint-plugin-unused-imports": "^4.1.3",
- "eslint-plugin-vue": "^9.27.0",
- "naive-ui": "^2.39.0",
- "npm-run-all": "^4.1.5",
- "npm-run-all2": "^6.2.0",
- "postcss": "^8.4.41",
- "prettier": "^3.2.5",
- "tailwindcss": "^3.4.9",
- "tsx": "^4.17.0",
- "typescript": "~5.4.0",
- "unplugin-auto-import": "^0.18.2",
- "unplugin-vue-components": "^0.27.3",
- "vite": "^5.3.1",
- "vite-plugin-singlefile": "^2.0.2",
- "vite-plugin-vue-devtools": "^7.3.1",
- "vite-ssg": "^0.23.8",
- "vue-tsc": "^2.0.21"
- }
-}
diff --git a/frontend/postcss.config.js b/frontend/postcss.config.js
deleted file mode 100644
index 9ed16a0..0000000
--- a/frontend/postcss.config.js
+++ /dev/null
@@ -1,6 +0,0 @@
-export default {
- plugins: {
- autoprefixer: {},
- tailwindcss: {}
- }
-}
diff --git a/frontend/public/favicon.ico b/frontend/public/favicon.ico
deleted file mode 100644
index df36fcf..0000000
Binary files a/frontend/public/favicon.ico and /dev/null differ
diff --git a/frontend/server.ts b/frontend/server.ts
deleted file mode 100644
index daea2cb..0000000
--- a/frontend/server.ts
+++ /dev/null
@@ -1,80 +0,0 @@
-/* eslint-disable no-undef */
-import { faker } from '@faker-js/faker'
-import Hapi from '@hapi/hapi'
-
-const init = async () => {
- const server = Hapi.server({
- host: 'localhost',
- port: 3001,
- routes: {
- cors: {
- origin: ['*']
- }
- }
- })
-
- server.route({
- path: '/',
- handler: (_request, _h) => {
- return 'Hello World!'
- },
- method: 'GET'
- })
-
- server.route({
- path: '/hello/{name}',
- handler: (request, _h) => {
- return `Hello ${encodeURIComponent(request.params.name)}!`
- },
- method: 'GET'
- })
-
- server.route({
- path: '/getData/{numPoints}',
- handler: (_request, _h) => {
- // Create a random array of data for a t-sne plot
-
- const numberOfPoints = parseInt(_request.params.numPoints, 10) || 100
-
- // Generate 10 random music genres
- const genres = Array.from({ length: 30 }, () => faker.music.genre())
-
- // Reduce the genres to a unique set of genres
- const uniqueGenres = genres.reduce((acc, genre) => {
- if (!acc.includes(genre)) {
- acc.push(genre)
- }
- return acc
- }, [])
-
- // Limit the number of genres to 10
- const limitedGenres = uniqueGenres.slice(0, 10)
-
- // Generate 1000 random data points
- let id = 0
- const data = Array.from({ length: numberOfPoints }, () => {
- return {
- id: id++,
- title: faker.music.songName(),
- genre: faker.helpers.arrayElement(limitedGenres).replace(' ', '_'),
- x: Math.floor(Math.random() * 100),
- y: Math.floor(Math.random() * 100)
- }
- })
-
- return data
- },
- method: 'GET'
- })
-
- await server.start()
-
- console.log('Server running on %s', server.info.uri)
-}
-
-process.on('unhandledRejection', (err) => {
- console.log(err)
- process.exit(1)
-})
-
-init()
diff --git a/frontend/src/App.vue b/frontend/src/App.vue
deleted file mode 100644
index 7418943..0000000
--- a/frontend/src/App.vue
+++ /dev/null
@@ -1,21 +0,0 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/frontend/src/assets/base.css b/frontend/src/assets/base.css
deleted file mode 100644
index b62efec..0000000
--- a/frontend/src/assets/base.css
+++ /dev/null
@@ -1,87 +0,0 @@
-/* color palette from */
-:root {
- --vt-c-white: #ffffff;
- --vt-c-white-soft: #f8f8f8;
- --vt-c-white-mute: #f2f2f2;
-
- --vt-c-black: #181818;
- --vt-c-black-soft: #222222;
- --vt-c-black-mute: #282828;
-
- --vt-c-indigo: #2c3e50;
-
- --vt-c-divider-light-1: rgba(60, 60, 60, 0.29);
- --vt-c-divider-light-2: rgba(60, 60, 60, 0.12);
- --vt-c-divider-dark-1: rgba(84, 84, 84, 0.65);
- --vt-c-divider-dark-2: rgba(84, 84, 84, 0.48);
-
- --vt-c-text-light-1: var(--vt-c-indigo);
- --vt-c-text-light-2: rgba(60, 60, 60, 0.66);
- --vt-c-text-dark-1: var(--vt-c-white);
- --vt-c-text-dark-2: rgba(235, 235, 235, 0.64);
-}
-
-/* semantic color variables for this project */
-:root {
- --color-background: var(--vt-c-white);
- --color-background-soft: var(--vt-c-white-soft);
- --color-background-mute: var(--vt-c-white-mute);
-
- --color-border: var(--vt-c-divider-light-2);
- --color-border-hover: var(--vt-c-divider-light-1);
-
- --color-heading: var(--vt-c-text-light-1);
- --color-text: var(--vt-c-text-light-1);
-
- --section-gap: 160px;
-}
-
-@media (prefers-color-scheme: dark) {
- :root {
- --color-background: var(--vt-c-black);
- --color-background-soft: var(--vt-c-black-soft);
- --color-background-mute: var(--vt-c-black-mute);
-
- --color-border: var(--vt-c-divider-dark-2);
- --color-border-hover: var(--vt-c-divider-dark-1);
-
- --color-heading: var(--vt-c-text-dark-1);
- --color-text: var(--vt-c-text-dark-2);
- }
-}
-
-*,
-*::before,
-*::after {
- box-sizing: border-box;
- margin: 0;
- font-weight: normal;
-}
-
-body {
- min-height: 100vh;
- color: var(--color-text);
- background: var(--color-background);
- transition:
- color 0.5s,
- background-color 0.5s;
- line-height: 1.6;
- font-family:
- Inter,
- -apple-system,
- BlinkMacSystemFont,
- 'Segoe UI',
- Roboto,
- Oxygen,
- Ubuntu,
- Cantarell,
- 'Fira Sans',
- 'Droid Sans',
- 'Helvetica Neue',
- sans-serif;
- font-size: 15px;
- text-rendering: optimizeLegibility;
- -webkit-font-smoothing: antialiased;
- -moz-osx-font-smoothing: grayscale;
- @apply bg-white p-4 text-slate-800;
-}
diff --git a/frontend/src/assets/logo.svg b/frontend/src/assets/logo.svg
deleted file mode 100644
index 7565660..0000000
--- a/frontend/src/assets/logo.svg
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/frontend/src/assets/main.css b/frontend/src/assets/main.css
deleted file mode 100644
index 4f5cc3f..0000000
--- a/frontend/src/assets/main.css
+++ /dev/null
@@ -1,75 +0,0 @@
-@import './base.css';
-
-@tailwind base;
-@tailwind components;
-@tailwind utilities;
-
-@layer base {
- /* inter var - latin */
- @font-face {
- font-family: 'Inter';
- font-style: normal;
- font-weight: 100 900;
- src: url('/fonts/inter-var-latin.woff2') format('woff2');
- }
-
- h1 {
- @apply text-2xl font-bold md:text-4xl;
- }
-
- h2 {
- @apply text-xl font-bold md:text-3xl;
- }
-
- h3 {
- @apply text-lg font-bold md:text-2xl;
- }
-
- h4 {
- @apply text-base font-bold md:text-lg;
- }
-
- p {
- @apply text-sm text-slate-600 md:text-base;
- }
-
- body {
- @apply text-sm md:text-base;
- }
-
- .bg-dark a.custom-link {
- @apply border-gray-200 hover:border-gray-200/0;
- }
-
- pre {
- @apply text-xs;
- }
-}
-
-/* ------------------------------------------
-Transition styles for
---------------------------------------------- */
-
-.fade-enter-active,
-.fade-leave-active {
- transition: opacity 0.2s ease-in-out;
-}
-
-.fade-enter-from,
-.fade-leave-to {
- opacity: 0;
- /* transform: translateY(-20px); */
-}
-
-.lightfadeleft-enter-active,
-.lightfadeleft-leave-active {
- transition: all 0.3s ease-in-out;
- overflow-x: hidden;
- opacity: 0.7;
-}
-
-.lightfadeleft-enter-from,
-.lightfadeleft-leave-to {
- opacity: 0;
- transform: translateY(-20px);
-}
diff --git a/frontend/src/assets/tsne.astro b/frontend/src/assets/tsne.astro
deleted file mode 100644
index 07d8391..0000000
--- a/frontend/src/assets/tsne.astro
+++ /dev/null
@@ -1,14 +0,0 @@
----
-import Layout from "../layouts/Layout.astro";
-import Card from "../components/Card.astro";
----
-
-
-
- T-SNE
-
-
-
-
-
-
diff --git a/frontend/src/components/HelloWorld.vue b/frontend/src/components/HelloWorld.vue
deleted file mode 100644
index 6a1c5dd..0000000
--- a/frontend/src/components/HelloWorld.vue
+++ /dev/null
@@ -1,43 +0,0 @@
-
-
-
-
-
{{ msg }}
-
-
- You’ve successfully created a project with
- Vite
- +
- Vue 3 . What's next?
-
-
-
-
-
diff --git a/frontend/src/components/TheWelcome.vue b/frontend/src/components/TheWelcome.vue
deleted file mode 100644
index b4af8db..0000000
--- a/frontend/src/components/TheWelcome.vue
+++ /dev/null
@@ -1,99 +0,0 @@
-
-
-
-
-
-
-
-
- Documentation
-
- Vue’s
- official documentation
- provides you with all information you need to get started.
-
-
-
-
-
-
-
- Tooling
-
- This project is served and bundled with
- Vite . The
- recommended IDE setup is
- VSCode
- +
- Volar . If
- you need to test your components and web pages, check out
- Cypress
- and
- Cypress Component Testing .
-
-
-
- More instructions are available in README.md
.
-
-
-
-
-
-
-
- Ecosystem
-
- Get official tools and libraries for your project:
- Pinia
- ,
- Vue Router
- ,
- Vue Test Utils
- , and
- Vue Dev Tools . If
- you need more resources, we suggest paying
- Awesome Vue
- a visit.
-
-
-
-
-
-
-
- Community
-
- Got stuck? Ask your question on
- Vue Land , our official
- Discord server, or
- StackOverflow
- . You should also subscribe to
- our mailing list and follow
- the official
- @vuejs
- twitter account for latest news in the Vue world.
-
-
-
-
-
-
-
- Support Vue
-
- As an independent project, Vue relies on community backing for its sustainability. You can help
- us by
- becoming a sponsor .
-
-
diff --git a/frontend/src/components/WelcomeItem.vue b/frontend/src/components/WelcomeItem.vue
deleted file mode 100644
index 2e4b609..0000000
--- a/frontend/src/components/WelcomeItem.vue
+++ /dev/null
@@ -1,89 +0,0 @@
-
-
-
-
-
diff --git a/frontend/src/components/icons/IconCommunity.vue b/frontend/src/components/icons/IconCommunity.vue
deleted file mode 100644
index 2dc8b05..0000000
--- a/frontend/src/components/icons/IconCommunity.vue
+++ /dev/null
@@ -1,7 +0,0 @@
-
-
-
-
-
diff --git a/frontend/src/components/icons/IconDocumentation.vue b/frontend/src/components/icons/IconDocumentation.vue
deleted file mode 100644
index 6d4791c..0000000
--- a/frontend/src/components/icons/IconDocumentation.vue
+++ /dev/null
@@ -1,7 +0,0 @@
-
-
-
-
-
diff --git a/frontend/src/components/icons/IconEcosystem.vue b/frontend/src/components/icons/IconEcosystem.vue
deleted file mode 100644
index c3a4f07..0000000
--- a/frontend/src/components/icons/IconEcosystem.vue
+++ /dev/null
@@ -1,7 +0,0 @@
-
-
-
-
-
diff --git a/frontend/src/components/icons/IconSupport.vue b/frontend/src/components/icons/IconSupport.vue
deleted file mode 100644
index 7452834..0000000
--- a/frontend/src/components/icons/IconSupport.vue
+++ /dev/null
@@ -1,7 +0,0 @@
-
-
-
-
-
diff --git a/frontend/src/components/icons/IconTooling.vue b/frontend/src/components/icons/IconTooling.vue
deleted file mode 100644
index 660598d..0000000
--- a/frontend/src/components/icons/IconTooling.vue
+++ /dev/null
@@ -1,19 +0,0 @@
-
-
-
-
-
-
diff --git a/frontend/src/lib/otsne.js b/frontend/src/lib/otsne.js
deleted file mode 100644
index c993967..0000000
--- a/frontend/src/lib/otsne.js
+++ /dev/null
@@ -1,398 +0,0 @@
-// create main global object
-var tsnejs = tsnejs || { REVISION: 'ALPHA' }
-
-;(function (global) {
- 'use strict'
-
- // utility function
- var assert = function (condition, message) {
- if (!condition) {
- throw message || 'Assertion failed'
- }
- }
-
- // syntax sugar
- var getopt = function (opt, field, defaultval) {
- if (Object.prototype.hasOwnProperty.call(opt, field)) {
- return opt[field]
- } else {
- return defaultval
- }
- }
-
- // return 0 mean unit standard deviation random number
- var return_v = false
- var v_val = 0.0
- var gaussRandom = function () {
- if (return_v) {
- return_v = false
- return v_val
- }
- var u = 2 * Math.random() - 1
- var v = 2 * Math.random() - 1
- var r = u * u + v * v
- if (r == 0 || r > 1) return gaussRandom()
- var c = Math.sqrt((-2 * Math.log(r)) / r)
- v_val = v * c // cache this for next function call for efficiency
- return_v = true
- return u * c
- }
-
- // return random normal number
- var randn = function (mu, std) {
- return mu + gaussRandom() * std
- }
-
- // utilitity that creates contiguous vector of zeros of size n
- var zeros = function (n) {
- if (typeof n === 'undefined' || isNaN(n)) {
- return []
- }
- if (typeof ArrayBuffer === 'undefined') {
- // lacking browser support
- var arr = new Array(n)
- for (var i = 0; i < n; i++) {
- arr[i] = 0
- }
- return arr
- } else {
- return new Float64Array(n) // typed arrays are faster
- }
- }
-
- // utility that returns 2d array filled with random numbers
- // or with value s, if provided
- var randn2d = function (n, d, s) {
- var uses = typeof s !== 'undefined'
- var x = []
- for (var i = 0; i < n; i++) {
- var xhere = []
- for (var j = 0; j < d; j++) {
- if (uses) {
- xhere.push(s)
- } else {
- xhere.push(randn(0.0, 1e-4))
- }
- }
- x.push(xhere)
- }
- return x
- }
-
- // compute L2 distance between two vectors
- var L2 = function (x1, x2) {
- var D = x1.length
- var d = 0
- for (var i = 0; i < D; i++) {
- var x1i = x1[i]
- var x2i = x2[i]
- d += (x1i - x2i) * (x1i - x2i)
- }
- return d
- }
-
- // compute pairwise distance in all vectors in X
- var xtod = function (X) {
- var N = X.length
- var dist = zeros(N * N) // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = L2(X[i], X[j])
- dist[i * N + j] = d
- dist[j * N + i] = d
- }
- }
- return dist
- }
-
- // compute (p_{i|j} + p_{j|i})/(2n)
- var d2p = function (D, perplexity, tol) {
- var Nf = Math.sqrt(D.length) // this better be an integer
- var N = Math.floor(Nf)
- assert(N === Nf, 'D should have square number of elements.')
- var Htarget = Math.log(perplexity) // target entropy of distribution
- var P = zeros(N * N) // temporary probability matrix
-
- var prow = zeros(N) // a temporary storage compartment
- for (var i = 0; i < N; i++) {
- var betamin = -Infinity
- var betamax = Infinity
- var beta = 1 // initial value of precision
- var done = false
- var maxtries = 50
-
- // perform binary search to find a suitable precision beta
- // so that the entropy of the distribution is appropriate
- var num = 0
- while (!done) {
- //debugger;
-
- // compute entropy and kernel row with beta precision
- var psum = 0.0
- for (var j = 0; j < N; j++) {
- var pj = Math.exp(-D[i * N + j] * beta)
- if (i === j) {
- pj = 0
- } // we dont care about diagonals
- prow[j] = pj
- psum += pj
- }
- // normalize p and compute entropy
- var Hhere = 0.0
- for (var j = 0; j < N; j++) {
- if (psum == 0) {
- var pj = 0
- } else {
- var pj = prow[j] / psum
- }
- prow[j] = pj
- if (pj > 1e-7) Hhere -= pj * Math.log(pj)
- }
-
- // adjust beta based on result
- if (Hhere > Htarget) {
- // entropy was too high (distribution too diffuse)
- // so we need to increase the precision for more peaky distribution
- betamin = beta // move up the bounds
- if (betamax === Infinity) {
- beta = beta * 2
- } else {
- beta = (beta + betamax) / 2
- }
- } else {
- // converse case. make distrubtion less peaky
- betamax = beta
- if (betamin === -Infinity) {
- beta = beta / 2
- } else {
- beta = (beta + betamin) / 2
- }
- }
-
- // stopping conditions: too many tries or got a good precision
- num++
- if (Math.abs(Hhere - Htarget) < tol) {
- done = true
- }
- if (num >= maxtries) {
- done = true
- }
- }
-
- // console.log('data point ' + i + ' gets precision ' + beta + ' after ' + num + ' binary search steps.');
- // copy over the final prow to P at row i
- for (var j = 0; j < N; j++) {
- P[i * N + j] = prow[j]
- }
- } // end loop over examples i
-
- // symmetrize P and normalize it to sum to 1 over all ij
- var Pout = zeros(N * N)
- var N2 = N * 2
- for (var i = 0; i < N; i++) {
- for (var j = 0; j < N; j++) {
- Pout[i * N + j] = Math.max((P[i * N + j] + P[j * N + i]) / N2, 1e-100)
- }
- }
-
- return Pout
- }
-
- // helper function
- function sign(x) {
- return x > 0 ? 1 : x < 0 ? -1 : 0
- }
-
- var tSNE = function (opt) {
- var opt = opt || {}
- this.perplexity = getopt(opt, 'perplexity', 30) // effective number of nearest neighbors
- this.dim = getopt(opt, 'dim', 2) // by default 2-D tSNE
- this.epsilon = getopt(opt, 'epsilon', 10) // learning rate
-
- this.iter = 0
- }
-
- tSNE.prototype = {
- // return cost and gradient, given an arrangement
- costGrad: function (Y) {
- var N = this.N
- var dim = this.dim // dim of output space
- var P = this.P
-
- var pmul = this.iter < 100 ? 4 : 1 // trick that helps with local optima
-
- // compute current Q distribution, unnormalized first
- var Qu = zeros(N * N)
- var qsum = 0.0
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var dsum = 0.0
- for (var d = 0; d < dim; d++) {
- var dhere = Y[i][d] - Y[j][d]
- dsum += dhere * dhere
- }
- var qu = 1.0 / (1.0 + dsum) // Student t-distribution
- Qu[i * N + j] = qu
- Qu[j * N + i] = qu
- qsum += 2 * qu
- }
- }
- // normalize Q distribution to sum to 1
- var NN = N * N
- var Q = zeros(NN)
- for (var q = 0; q < NN; q++) {
- Q[q] = Math.max(Qu[q] / qsum, 1e-100)
- }
-
- var cost = 0.0
- var grad = []
- for (var i = 0; i < N; i++) {
- var gsum = new Array(dim) // init grad for point i
- for (var d = 0; d < dim; d++) {
- gsum[d] = 0.0
- }
- for (var j = 0; j < N; j++) {
- cost += -P[i * N + j] * Math.log(Q[i * N + j]) // accumulate cost (the non-constant portion at least...)
- var premult = 4 * (pmul * P[i * N + j] - Q[i * N + j]) * Qu[i * N + j]
- for (var d = 0; d < dim; d++) {
- gsum[d] += premult * (Y[i][d] - Y[j][d])
- }
- }
- grad.push(gsum)
- }
-
- return { cost: cost, grad: grad }
- },
-
- // for debugging: gradient check
- debugGrad: function () {
- var N = this.N
-
- var cg = this.costGrad(this.Y) // evaluate gradient
- var cost = cg.cost
- var grad = cg.grad
-
- var e = 1e-5
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var yold = this.Y[i][d]
-
- this.Y[i][d] = yold + e
- var cg0 = this.costGrad(this.Y)
-
- this.Y[i][d] = yold - e
- var cg1 = this.costGrad(this.Y)
-
- var analytic = grad[i][d]
- var numerical = (cg0.cost - cg1.cost) / (2 * e)
- console.log(
- i + ',' + d + ': gradcheck analytic: ' + analytic + ' vs. numerical: ' + numerical
- )
-
- this.Y[i][d] = yold
- }
- }
- },
- // return pointer to current solution
- getSolution: function () {
- return this.Y
- },
- // this function takes a given distance matrix and creates
- // matrix P from them.
- // D is assumed to be provided as a list of lists, and should be symmetric
- initDataDist: function (D) {
- var N = D.length
- assert(N > 0, ' X is empty? You must have some data!')
- // convert D to a (fast) typed array version
- var dists = zeros(N * N) // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = D[i][j]
- dists[i * N + j] = d
- dists[j * N + i] = d
- }
- }
- this.P = d2p(dists, this.perplexity, 1e-4)
- this.N = N
- this.initSolution() // refresh this
- },
- // this function takes a set of high-dimensional points
- // and creates matrix P from them using gaussian kernel
- initDataRaw: function (X) {
- var N = X.length
- var D = X[0].length
- assert(N > 0, ' X is empty? You must have some data!')
- assert(D > 0, ' X[0] is empty? Where is the data?')
- var dists = xtod(X) // convert X to distances using gaussian kernel
- this.P = d2p(dists, this.perplexity, 1e-4) // attach to object
- this.N = N // back up the size of the dataset
- this.initSolution() // refresh this
- },
-
- // (re)initializes the solution to random
- initSolution: function () {
- // generate random solution to t-SNE
- this.Y = randn2d(this.N, this.dim) // the solution
- this.gains = randn2d(this.N, this.dim, 1.0) // step gains to accelerate progress in unchanging directions
- this.ystep = randn2d(this.N, this.dim, 0.0) // momentum accumulator
- this.iter = 0
- },
-
- // perform a single step of optimization to improve the embedding
- step: function () {
- this.iter += 1
- var N = this.N
-
- var cg = this.costGrad(this.Y) // evaluate gradient
- var cost = cg.cost
- var grad = cg.grad
-
- // perform gradient step
- var ymean = zeros(this.dim)
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var gid = grad[i][d]
- var sid = this.ystep[i][d]
- var gainid = this.gains[i][d]
-
- // compute gain update
- var newgain = sign(gid) === sign(sid) ? gainid * 0.8 : gainid + 0.2
- if (newgain < 0.01) newgain = 0.01 // clamp
- this.gains[i][d] = newgain // store for next turn
-
- // compute momentum step direction
- var momval = this.iter < 250 ? 0.5 : 0.8
- var newsid = momval * sid - this.epsilon * newgain * grad[i][d]
- this.ystep[i][d] = newsid // remember the step we took
-
- // step!
- this.Y[i][d] += newsid
-
- ymean[d] += this.Y[i][d] // accumulate mean so that we can center later
- }
- }
-
- // reproject Y to be zero mean
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- this.Y[i][d] -= ymean[d] / N
- }
- }
-
- //if(this.iter%100===0) console.log('iter ' + this.iter + ', cost: ' + cost);
- return cost // return current cost
- }
- }
-
- global.tSNE = tSNE // export tSNE class
-})(tsnejs)
-
-// export the library to window, or to module in nodejs
-;(function (lib) {
- 'use strict'
- if (typeof module === 'undefined' || typeof module.exports === 'undefined') {
- window.tsnejs = lib // in ordinary browser attach library to window
- } else {
- module.exports = lib // in nodejs
- }
-})()
diff --git a/frontend/src/lib/tsne.js b/frontend/src/lib/tsne.js
deleted file mode 100644
index e1de714..0000000
--- a/frontend/src/lib/tsne.js
+++ /dev/null
@@ -1,384 +0,0 @@
-// src/utils/tSNE.js
-
-const tsnejs = { REVISION: 'ALPHA' }
-
-var return_v = false
-var v_val = 0.0
-
-// utility function
-var assert = function (condition, message) {
- if (!condition) {
- throw message || 'Assertion failed'
- }
-}
-
-// syntax sugar
-var getopt = function (opt, field, defaultval) {
- if (Object.prototype.hasOwnProperty.call(opt, field)) {
- return opt[field]
- } else {
- return defaultval
- }
-}
-
-var gaussRandom = function () {
- if (return_v) {
- return_v = false
- return v_val
- }
- var u = 2 * Math.random() - 1
- var v = 2 * Math.random() - 1
- var r = u * u + v * v
- if (r == 0 || r > 1) return gaussRandom()
- var c = Math.sqrt((-2 * Math.log(r)) / r)
- v_val = v * c // cache this for next function call for efficiency
- return_v = true
- return u * c
-}
-
-// return random normal number
-var randn = function (mu, std) {
- return mu + gaussRandom() * std
-}
-
-// utilitity that creates contiguous vector of zeros of size n
-var zeros = function (n) {
- if (typeof n === 'undefined' || isNaN(n)) {
- return []
- }
- if (typeof ArrayBuffer === 'undefined') {
- // lacking browser support
- var arr = new Array(n)
- for (var i = 0; i < n; i++) {
- arr[i] = 0
- }
- return arr
- } else {
- return new Float64Array(n) // typed arrays are faster
- }
-}
-
-// utility that returns 2d array filled with random numbers
-// or with value s, if provided
-var randn2d = function (n, d, s) {
- var uses = typeof s !== 'undefined'
- var x = []
- for (var i = 0; i < n; i++) {
- var xhere = []
- for (var j = 0; j < d; j++) {
- if (uses) {
- xhere.push(s)
- } else {
- xhere.push(randn(0.0, 1e-4))
- }
- }
- x.push(xhere)
- }
- return x
-}
-
-// compute L2 distance between two vectors
-var L2 = function (x1, x2) {
- var D = x1.length
- var d = 0
- for (var i = 0; i < D; i++) {
- var x1i = x1[i]
- var x2i = x2[i]
- d += (x1i - x2i) * (x1i - x2i)
- }
- return d
-}
-
-// compute pairwise distance in all vectors in X
-var xtod = function (X) {
- var N = X.length
- var dist = zeros(N * N) // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = L2(X[i], X[j])
- dist[i * N + j] = d
- dist[j * N + i] = d
- }
- }
- return dist
-}
-
-// compute (p_{i|j} + p_{j|i})/(2n)
-var d2p = function (D, perplexity, tol) {
- var Nf = Math.sqrt(D.length) // this better be an integer
- var N = Math.floor(Nf)
- assert(N === Nf, 'D should have square number of elements.')
- var Htarget = Math.log(perplexity) // target entropy of distribution
- var P = zeros(N * N) // temporary probability matrix
-
- var prow = zeros(N) // a temporary storage compartment
- for (var i = 0; i < N; i++) {
- var betamin = -Infinity
- var betamax = Infinity
- var beta = 1 // initial value of precision
- var done = false
- var maxtries = 50
-
- // perform binary search to find a suitable precision beta
- // so that the entropy of the distribution is appropriate
- var num = 0
- while (!done) {
- //debugger;
-
- // compute entropy and kernel row with beta precision
- var psum = 0.0
- for (var j = 0; j < N; j++) {
- var pj = Math.exp(-D[i * N + j] * beta)
- if (i === j) {
- pj = 0
- } // we dont care about diagonals
- prow[j] = pj
- psum += pj
- }
- // normalize p and compute entropy
- var Hhere = 0.0
- for (var j = 0; j < N; j++) {
- if (psum == 0) {
- var pj = 0
- } else {
- var pj = prow[j] / psum
- }
- prow[j] = pj
- if (pj > 1e-7) Hhere -= pj * Math.log(pj)
- }
-
- // adjust beta based on result
- if (Hhere > Htarget) {
- // entropy was too high (distribution too diffuse)
- // so we need to increase the precision for more peaky distribution
- betamin = beta // move up the bounds
- if (betamax === Infinity) {
- beta = beta * 2
- } else {
- beta = (beta + betamax) / 2
- }
- } else {
- // converse case. make distrubtion less peaky
- betamax = beta
- if (betamin === -Infinity) {
- beta = beta / 2
- } else {
- beta = (beta + betamin) / 2
- }
- }
-
- // stopping conditions: too many tries or got a good precision
- num++
- if (Math.abs(Hhere - Htarget) < tol) {
- done = true
- }
- if (num >= maxtries) {
- done = true
- }
- }
-
- // console.log('data point ' + i + ' gets precision ' + beta + ' after ' + num + ' binary search steps.');
- // copy over the final prow to P at row i
- for (var j = 0; j < N; j++) {
- P[i * N + j] = prow[j]
- }
- } // end loop over examples i
-
- // symmetrize P and normalize it to sum to 1 over all ij
- var Pout = zeros(N * N)
- var N2 = N * 2
- for (var i = 0; i < N; i++) {
- for (var j = 0; j < N; j++) {
- Pout[i * N + j] = Math.max((P[i * N + j] + P[j * N + i]) / N2, 1e-100)
- }
- }
-
- return Pout
-}
-
-function sign(x) {
- return x > 0 ? 1 : x < 0 ? -1 : 0
-}
-
-const tSNE = function (optt) {
- let opt = optt || {}
- this.perplexity = getopt(opt, 'perplexity', 30)
- this.dim = getopt(opt, 'dim', 2)
- this.epsilon = getopt(opt, 'epsilon', 10)
- this.iter = 0
-}
-
-tSNE.prototype = {
- // ... (copy all the prototype methods from the original file)
-
- costGrad: function (Y) {
- var N = this.N
- var dim = this.dim // dim of output space
- var P = this.P
-
- var pmul = this.iter < 100 ? 4 : 1 // trick that helps with local optima
-
- // compute current Q distribution, unnormalized first
- var Qu = zeros(N * N)
- var qsum = 0.0
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var dsum = 0.0
- for (var d = 0; d < dim; d++) {
- var dhere = Y[i][d] - Y[j][d]
- dsum += dhere * dhere
- }
- var qu = 1.0 / (1.0 + dsum) // Student t-distribution
- Qu[i * N + j] = qu
- Qu[j * N + i] = qu
- qsum += 2 * qu
- }
- }
- // normalize Q distribution to sum to 1
- var NN = N * N
- var Q = zeros(NN)
- for (var q = 0; q < NN; q++) {
- Q[q] = Math.max(Qu[q] / qsum, 1e-100)
- }
-
- var cost = 0.0
- var grad = []
- for (var i = 0; i < N; i++) {
- var gsum = new Array(dim) // init grad for point i
- for (var d = 0; d < dim; d++) {
- gsum[d] = 0.0
- }
- for (var j = 0; j < N; j++) {
- cost += -P[i * N + j] * Math.log(Q[i * N + j]) // accumulate cost (the non-constant portion at least...)
- var premult = 4 * (pmul * P[i * N + j] - Q[i * N + j]) * Qu[i * N + j]
- for (var d = 0; d < dim; d++) {
- gsum[d] += premult * (Y[i][d] - Y[j][d])
- }
- }
- grad.push(gsum)
- }
-
- return { cost: cost, grad: grad }
- },
-
- // for debugging: gradient check
- debugGrad: function () {
- var N = this.N
-
- var cg = this.costGrad(this.Y) // evaluate gradient
- var cost = cg.cost
- var grad = cg.grad
-
- var e = 1e-5
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var yold = this.Y[i][d]
-
- this.Y[i][d] = yold + e
- var cg0 = this.costGrad(this.Y)
-
- this.Y[i][d] = yold - e
- var cg1 = this.costGrad(this.Y)
-
- var analytic = grad[i][d]
- var numerical = (cg0.cost - cg1.cost) / (2 * e)
- console.log(
- i + ',' + d + ': gradcheck analytic: ' + analytic + ' vs. numerical: ' + numerical
- )
-
- this.Y[i][d] = yold
- }
- }
- },
- // return pointer to current solution
- getSolution: function () {
- return this.Y
- },
- // this function takes a given distance matrix and creates
- // matrix P from them.
- // D is assumed to be provided as a list of lists, and should be symmetric
- initDataDist: function (D) {
- var N = D.length
- assert(N > 0, ' X is empty? You must have some data!')
- // convert D to a (fast) typed array version
- var dists = zeros(N * N) // allocate contiguous array
- for (var i = 0; i < N; i++) {
- for (var j = i + 1; j < N; j++) {
- var d = D[i][j]
- dists[i * N + j] = d
- dists[j * N + i] = d
- }
- }
- this.P = d2p(dists, this.perplexity, 1e-4)
- this.N = N
- this.initSolution() // refresh this
- },
- // this function takes a set of high-dimensional points
- // and creates matrix P from them using gaussian kernel
- initDataRaw: function (X) {
- var N = X.length
- var D = X[0].length
- assert(N > 0, ' X is empty? You must have some data!')
- assert(D > 0, ' X[0] is empty? Where is the data?')
- var dists = xtod(X) // convert X to distances using gaussian kernel
- this.P = d2p(dists, this.perplexity, 1e-4) // attach to object
- this.N = N // back up the size of the dataset
- this.initSolution() // refresh this
- },
-
- // (re)initializes the solution to random
- initSolution: function () {
- // generate random solution to t-SNE
- this.Y = randn2d(this.N, this.dim) // the solution
- this.gains = randn2d(this.N, this.dim, 1.0) // step gains to accelerate progress in unchanging directions
- this.ystep = randn2d(this.N, this.dim, 0.0) // momentum accumulator
- this.iter = 0
- },
-
- // perform a single step of optimization to improve the embedding
- step: function () {
- this.iter += 1
- var N = this.N
-
- var cg = this.costGrad(this.Y) // evaluate gradient
- var cost = cg.cost
- var grad = cg.grad
-
- // perform gradient step
- var ymean = zeros(this.dim)
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- var gid = grad[i][d]
- var sid = this.ystep[i][d]
- var gainid = this.gains[i][d]
-
- // compute gain update
- var newgain = sign(gid) === sign(sid) ? gainid * 0.8 : gainid + 0.2
- if (newgain < 0.01) newgain = 0.01 // clamp
- this.gains[i][d] = newgain // store for next turn
-
- // compute momentum step direction
- var momval = this.iter < 250 ? 0.5 : 0.8
- var newsid = momval * sid - this.epsilon * newgain * grad[i][d]
- this.ystep[i][d] = newsid // remember the step we took
-
- // step!
- this.Y[i][d] += newsid
-
- ymean[d] += this.Y[i][d] // accumulate mean so that we can center later
- }
- }
-
- // reproject Y to be zero mean
- for (var i = 0; i < N; i++) {
- for (var d = 0; d < this.dim; d++) {
- this.Y[i][d] -= ymean[d] / N
- }
- }
-
- //if(this.iter%100===0) console.log('iter ' + this.iter + ', cost: ' + cost);
- return cost // return current cost
- }
-}
-
-export default tSNE
diff --git a/frontend/src/main.ts b/frontend/src/main.ts
deleted file mode 100644
index c486c90..0000000
--- a/frontend/src/main.ts
+++ /dev/null
@@ -1,14 +0,0 @@
-import './assets/main.css'
-
-import { createPinia } from 'pinia'
-import { createApp } from 'vue'
-
-import App from './App.vue'
-import router from './router'
-
-const app = createApp(App)
-
-app.use(createPinia())
-app.use(router)
-
-app.mount('#app')
diff --git a/frontend/src/router/index.ts b/frontend/src/router/index.ts
deleted file mode 100644
index c349525..0000000
--- a/frontend/src/router/index.ts
+++ /dev/null
@@ -1,31 +0,0 @@
-import { createRouter, createWebHistory } from 'vue-router'
-
-import TsneView from '@/views/TsneView.vue'
-
-import HomeView from '../views/HomeView.vue'
-
-const router = createRouter({
- history: createWebHistory(import.meta.env.BASE_URL),
- routes: [
- {
- name: 'home',
- path: '/',
- component: HomeView
- },
- {
- name: 'about',
- path: '/about',
- // route level code-splitting
- // this generates a separate chunk (About.[hash].js) for this route
- // which is lazy-loaded when the route is visited.
- component: () => import('../views/AboutView.vue')
- },
- {
- name: 'tsne',
- path: '/tsne',
- component: TsneView
- }
- ]
-})
-
-export default router
diff --git a/frontend/src/stores/counter.ts b/frontend/src/stores/counter.ts
deleted file mode 100644
index 69a97a2..0000000
--- a/frontend/src/stores/counter.ts
+++ /dev/null
@@ -1,12 +0,0 @@
-import { defineStore } from 'pinia'
-import { computed, ref } from 'vue'
-
-export const useCounterStore = defineStore('counter', () => {
- const count = ref(0)
- const doubleCount = computed(() => count.value * 2)
- function increment() {
- count.value++
- }
-
- return { count, doubleCount, increment }
-})
diff --git a/frontend/src/types/module.d.ts b/frontend/src/types/module.d.ts
deleted file mode 100644
index 4c46e0c..0000000
--- a/frontend/src/types/module.d.ts
+++ /dev/null
@@ -1 +0,0 @@
-declare module '*'
diff --git a/frontend/src/unimport.d.ts b/frontend/src/unimport.d.ts
deleted file mode 100644
index 9986a68..0000000
--- a/frontend/src/unimport.d.ts
+++ /dev/null
@@ -1,11 +0,0 @@
-export {}
-declare global {
-
-}
-// for vue template auto import
-import { UnwrapRef } from 'vue'
-declare module 'vue' {
- interface ComponentCustomProperties {
-
- }
-}
\ No newline at end of file
diff --git a/frontend/src/views/AboutView.vue b/frontend/src/views/AboutView.vue
deleted file mode 100644
index 95f4a35..0000000
--- a/frontend/src/views/AboutView.vue
+++ /dev/null
@@ -1,9 +0,0 @@
-
-
- about
-
- Home
-
- TSNE
-
-
diff --git a/frontend/src/views/HomeView.vue b/frontend/src/views/HomeView.vue
deleted file mode 100644
index c2cd4f0..0000000
--- a/frontend/src/views/HomeView.vue
+++ /dev/null
@@ -1,11 +0,0 @@
-
-
-
-
- hello
-
- TSNE
-
- About
-
-
diff --git a/frontend/src/views/TsneView.vue b/frontend/src/views/TsneView.vue
deleted file mode 100644
index 415566f..0000000
--- a/frontend/src/views/TsneView.vue
+++ /dev/null
@@ -1,334 +0,0 @@
-
-
-
-
- T-sne
-
-
-
- Load data
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- {{ categories }}
-
-
-
- {{ responseData }}
-
-
-
- {{ points }}
-
-
-
- {{ model }}
-
-
-
- {{ solution }}
-
-
-
-
-
-
- home
-
- About
-
-
-
diff --git a/frontend/src/views/TsneViewOld.vue b/frontend/src/views/TsneViewOld.vue
deleted file mode 100644
index 938768d..0000000
--- a/frontend/src/views/TsneViewOld.vue
+++ /dev/null
@@ -1,217 +0,0 @@
-
-
-
-
- T-sne
-
-
-
- Load data
-
-
-
-
-
-
-
-
-
-
- {{ points }}
-
-
-
- {{ model }}
-
-
-
- {{ solution }}
-
-
-
-
-
-
- home
-
- About
-
-
-
diff --git a/frontend/tailwind.config.js b/frontend/tailwind.config.js
deleted file mode 100644
index 1f10307..0000000
--- a/frontend/tailwind.config.js
+++ /dev/null
@@ -1,8 +0,0 @@
-/** @type {import('tailwindcss').Config} */
-export default {
- content: ['./index.html', './src/**/*.{vue,js,ts,jsx,tsx}'],
- plugins: [],
- theme: {
- extend: {}
- }
-}
diff --git a/frontend/tsconfig.app.json b/frontend/tsconfig.app.json
deleted file mode 100644
index e14c754..0000000
--- a/frontend/tsconfig.app.json
+++ /dev/null
@@ -1,14 +0,0 @@
-{
- "extends": "@vue/tsconfig/tsconfig.dom.json",
- "include": ["env.d.ts", "src/**/*", "src/**/*.vue"],
- "exclude": ["src/**/__tests__/*"],
- "compilerOptions": {
- "composite": true,
- "tsBuildInfoFile": "./node_modules/.tmp/tsconfig.app.tsbuildinfo",
-
- "baseUrl": ".",
- "paths": {
- "@/*": ["./src/*"]
- }
- }
-}
diff --git a/frontend/tsconfig.json b/frontend/tsconfig.json
deleted file mode 100644
index 66b5e57..0000000
--- a/frontend/tsconfig.json
+++ /dev/null
@@ -1,11 +0,0 @@
-{
- "files": [],
- "references": [
- {
- "path": "./tsconfig.node.json"
- },
- {
- "path": "./tsconfig.app.json"
- }
- ]
-}
diff --git a/frontend/tsconfig.node.json b/frontend/tsconfig.node.json
deleted file mode 100644
index f094063..0000000
--- a/frontend/tsconfig.node.json
+++ /dev/null
@@ -1,19 +0,0 @@
-{
- "extends": "@tsconfig/node20/tsconfig.json",
- "include": [
- "vite.config.*",
- "vitest.config.*",
- "cypress.config.*",
- "nightwatch.conf.*",
- "playwright.config.*"
- ],
- "compilerOptions": {
- "composite": true,
- "noEmit": true,
- "tsBuildInfoFile": "./node_modules/.tmp/tsconfig.node.tsbuildinfo",
-
- "module": "ESNext",
- "moduleResolution": "Bundler",
- "types": ["node"]
- }
-}
diff --git a/frontend/vite.config.ts b/frontend/vite.config.ts
deleted file mode 100644
index 870014d..0000000
--- a/frontend/vite.config.ts
+++ /dev/null
@@ -1,73 +0,0 @@
-import { fileURLToPath, URL } from 'node:url'
-
-import vue from '@vitejs/plugin-vue'
-import vueJsx from '@vitejs/plugin-vue-jsx'
-import Unimport from 'unimport/unplugin'
-import AutoImport from 'unplugin-auto-import/vite'
-import { NaiveUiResolver } from 'unplugin-vue-components/resolvers'
-import Components from 'unplugin-vue-components/vite'
-import { defineConfig } from 'vite'
-import vueDevTools from 'vite-plugin-vue-devtools'
-
-// https://vitejs.dev/config/
-export default defineConfig({
- assetsInclude: ['**/*.md'],
- plugins: [
- vue(),
- vueJsx(),
- vueDevTools(),
- Unimport.vite({
- addons: {
- vueTemplate: true
- },
- dts: 'src/unimport.d.ts', // Optional if not using TypeScript
- imports: [
- // {
- // name: "fetchWithAuth",
- // from: fileURLToPath(new URL("src/main.ts", import.meta.url)),
- // },
- ]
- }),
- AutoImport({
- dts: './auto-imports.d.ts',
- imports: [
- 'vue',
- 'vue-router',
- // custom imports
- {
- '@vueuse/core': [
- 'useMouse', // import { useMouse } from '@vueuse/core',
- ['useFetch', 'useMyFetch'] // import { useFetch as useMyFetch } from '@vueuse/core',
- ],
- axios: [
- ['default', 'axios'] // import { default as axios } from 'axios',
- ],
- 'naive-ui': ['useDialog', 'useMessage', 'useNotification', 'useLoadingBar'],
- notivue: ['usePush']
- },
- //type imports
- {
- from: 'naive-ui',
- imports: ['FormInst', 'FormRules', 'SelectOption', 'FormItemRule'],
- type: true
- }
- ],
- include: [
- /\.[tj]sx?$/, // .ts, .tsx, .js, .jsx
- /\.vue$/,
- /\.vue\?vue/, // .vue
- /\.md$/ // .md
- ],
- injectAtEnd: true
- }),
- Components({
- // resolvers for custom components
- resolvers: [NaiveUiResolver()]
- })
- ],
- resolve: {
- alias: {
- '@': fileURLToPath(new URL('./src', import.meta.url))
- }
- }
-})
diff --git a/frontend/yarn.lock b/frontend/yarn.lock
deleted file mode 100644
index 9e02022..0000000
--- a/frontend/yarn.lock
+++ /dev/null
@@ -1,5434 +0,0 @@
-# THIS IS AN AUTOGENERATED FILE. DO NOT EDIT THIS FILE DIRECTLY.
-# yarn lockfile v1
-
-
-"@alloc/quick-lru@^5.2.0":
- version "5.2.0"
- resolved "https://registry.yarnpkg.com/@alloc/quick-lru/-/quick-lru-5.2.0.tgz#7bf68b20c0a350f936915fcae06f58e32007ce30"
- integrity sha512-UrcABB+4bUrFABwbluTIBErXwvbsU/V7TZWfmbgJfbkwiBuziS9gxdODUyuiecfdGQ85jglMW6juS3+z5TsKLw==
-
-"@ampproject/remapping@^2.2.0":
- version "2.3.0"
- resolved "https://registry.yarnpkg.com/@ampproject/remapping/-/remapping-2.3.0.tgz#ed441b6fa600072520ce18b43d2c8cc8caecc7f4"
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- dependencies:
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- "@jridgewell/trace-mapping" "^0.3.24"
-
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diff --git a/service.cli/execute.sh b/service.cli/execute.sh
new file mode 100755
index 0000000..e537a03
--- /dev/null
+++ b/service.cli/execute.sh
@@ -0,0 +1,65 @@
+#!/bin/bash
+# set sh strict mode
+set -o errexit
+set -o nounset
+IFS=$(printf '\n\t')
+
+mkdir /home/scu/run
+cd /home/scu/run
+
+echo "starting service as"
+echo " User : $(id "$(whoami)")"
+echo " Workdir : $(pwd)"
+echo "..."
+echo
+
+# Sanity check: list the files available as inputs, if any
+echo "Files in input folder..."
+ls -al "${INPUT_FOLDER}"
+
+# Parse input parameters
+# Assuming these are passed as environment variables by osparc
+NAME="${NAME:-sPARcRNA}"
+MIN_CELLS="${MIN_CELLS:-3}"
+MIN_FEATURES="${MIN_FEATURES:-200}"
+MAX_FEATURES="${MAX_FEATURES:-2500}"
+RESOLUTION="${RESOLUTION:-0.8}"
+SPECIES="${SPECIES:-Homo sapiens}"
+MIN_PCT="${MIN_PCT:-0.25}"
+LOGFC_THRESHOLD="${LOGFC_THRESHOLD:-0.25}"
+GSEA_MIN_SIZE="${GSEA_MIN_SIZE:-15}"
+GSEA_MAX_SIZE="${GSEA_MAX_SIZE:-500}"
+CATEGORY="${CATEGORY:-H}"
+
+# Run the R script with command line arguments
+Rscript /home/${SC_USER_NAME}/dex.R \
+ --input "$INPUT_FOLDER" \
+ --output "$OUTPUT_FOLDER" \
+ --name "$NAME" \
+ --min_cells "$MIN_CELLS" \
+ --min_features "$MIN_FEATURES" \
+ --max_features "$MAX_FEATURES" \
+ --resolution "$RESOLUTION" \
+ --species "$SPECIES" \
+ --min_pct "$MIN_PCT" \
+ --logfc_threshold "$LOGFC_THRESHOLD" \
+ --gsea_min_size "$GSEA_MIN_SIZE" \
+ --gsea_max_size "$GSEA_MAX_SIZE" \
+ --category "$CATEGORY"
+
+# Check if outputs.json was created
+if [ ! -f "${OUTPUT_FOLDER}/outputs.json" ]; then
+ echo "Error: outputs.json was not created. Check R script execution."
+ exit 1
+fi
+
+python3 /home/${SC_USER_NAME}/json_convert.py "$INPUT_FOLDER" static/
+cp -R static/ "$OUTPUT_FOLDER"
+
+# Zip all output files
+zip -r outputs.zip "${OUTPUT_FOLDER}"/
+
+# Move the zip file to be the only output
+mv outputs.zip "${OUTPUT_FOLDER}/final_output.zip"
+
+echo "Service completed successfully."
\ No newline at end of file
diff --git a/src/pipeline/dex.R b/src/pipeline/dex.R
new file mode 100644
index 0000000..cd527f2
--- /dev/null
+++ b/src/pipeline/dex.R
@@ -0,0 +1,502 @@
+#!/usr/bin/env Rscript
+
+# Load required libraries
+library(Seurat)
+library(jsonlite)
+library(dplyr)
+library(fgsea)
+library(msigdbr)
+library(ggplot2)
+library(optparse)
+
+# Function to save data as both JSON and CSV
+save_data <- function(data,
+ name,
+ output_folder,
+ json = TRUE,
+ csv = TRUE) {
+ output_path <- file.path(output_folder)
+ json_file <- file.path(output_path, paste0(name, ".json"))
+ csv_file <- file.path(output_path, paste0(name, ".csv"))
+
+ if (!json && !csv) {
+ stop("At least one of JSON or CSV must be enabled")
+ }
+
+ out <- list()
+
+ if (json) {
+ # Check if data is a data frame and the first column is named 'cluster'
+ if (is.data.frame(data) && names(data)[1] == "cluster") {
+ # Convert to a named list
+ data_list <- split(data[-1], data$cluster)
+ json_data <- toJSON(data_list, pretty = TRUE, auto_unbox = TRUE)
+ } else {
+ json_data <- toJSON(data, pretty = TRUE, auto_unbox = TRUE)
+ }
+ write(json_data, json_file)
+ out$json <- json_file
+ }
+
+ if (csv) {
+ # Prepare data for CSV
+ csv_data <- as.data.frame(data) # Convert to data frame if it's not already
+ list_cols <- sapply(csv_data, is.list)
+
+ for (col in names(csv_data)[list_cols]) {
+ csv_data[[col]] <- sapply(csv_data[[col]], function(x)
+ paste(x, collapse = ";"))
+ }
+
+ # Save as CSV
+ write.csv(csv_data, csv_file, row.names = FALSE)
+ out$csv <- csv_file
+ }
+
+ return(out)
+}
+
+# Define command line options
+option_list <- list(
+ make_option(
+ c("-i", "--input"),
+ type = "character",
+ default = NULL,
+ help = "Input directory path",
+ metavar = "character"
+ ),
+ make_option(
+ c("-o", "--output"),
+ type = "character",
+ default = NULL,
+ help = "Output directory path",
+ metavar = "character"
+ ),
+ make_option(
+ c("-n", "--name"),
+ type = "character",
+ default = "sPARcRNA",
+ help = "The name of the dataset being analyzed",
+ metavar = "character"
+ ),
+ make_option(
+ c("-c", "--min_cells"),
+ type = "integer",
+ default = 3,
+ help = "Minimum number of cells expressing a gene",
+ metavar = "integer"
+ ),
+ make_option(
+ c("-f", "--min_features"),
+ type = "integer",
+ default = 200,
+ help = "Minimum number of features (genes) per cell",
+ metavar = "integer"
+ ),
+ make_option(
+ c("--max_features"),
+ type = "integer",
+ default = 2500,
+ help = "Maximum number of features (genes) per cell",
+ metavar = "integer"
+ ),
+ make_option(
+ c("--resolution"),
+ type = "numeric",
+ default = 0.8,
+ help = "Resolution parameter for clustering",
+ metavar = "numeric"
+ ),
+ make_option(
+ c("--species"),
+ type = "character",
+ default = "Homo sapiens",
+ help = "Species for GSEA",
+ metavar = "character"
+ ),
+ make_option(
+ c("--min_pct"),
+ type = "numeric",
+ default = 0.25,
+ help = "Minimum percentage for FindAllMarkers",
+ metavar = "numeric"
+ ),
+ make_option(
+ c("--logfc_threshold"),
+ type = "numeric",
+ default = 0.25,
+ help = "Log fold-change threshold for FindAllMarkers",
+ metavar = "numeric"
+ ),
+ make_option(
+ c("--gsea_min_size"),
+ type = "integer",
+ default = 15,
+ help = "Minimum gene set size for GSEA",
+ metavar = "integer"
+ ),
+ make_option(
+ c("--gsea_max_size"),
+ type = "integer",
+ default = 500,
+ help = "Maximum gene set size for GSEA",
+ metavar = "integer"
+ ),
+ make_option(
+ c("--category"),
+ type = "character",
+ default = "H",
+ help = "MSigDB category for GSEA",
+ metavar = "character"
+ )
+)
+
+default_options <- list(
+ input = 'validation/input/data/',
+ output = 'tmp_output/',
+ name = "sPARcRNA",
+ prefix = "",
+ min_cells = 3,
+ min_features = 200,
+ max_features = 2500,
+ resolution = 0.8,
+ species = "Mus musculus",
+ min_pct = 0.25,
+ logfc_threshold = 0.25,
+ gsea_min_size = 15,
+ gsea_max_size = 500,
+ category = "C5"
+)
+
+# Parse command line arguments
+opt_parser <- OptionParser(option_list = option_list)
+opt <- parse_args(opt_parser)
+# opt <- default_options
+
+# Validate input and output directories
+if (is.null(opt$input) || is.null(opt$output)) {
+ stop("Input and output directories must be specified")
+}
+
+if (!dir.exists(opt$input)) {
+ stop("Input directory does not exist: ", opt$input)
+}
+
+if (!dir.exists(opt$output)) {
+ dir.create(opt$output, recursive = TRUE)
+}
+
+# Function to find files matching patterns
+find_file <- function(dir, patterns) {
+ for (pattern in patterns) {
+ files <- list.files(dir, pattern = pattern, full.names = TRUE)
+ if (length(files) > 0)
+ return(files[1])
+ }
+ return(NULL)
+}
+
+# Find input files
+matrix_file <- find_file(opt$input, c("matrix.mtx", "matrix.mtx.gz", ".*matrix\\.mtx"))
+features_file <- find_file(
+ opt$input,
+ c(
+ "features.tsv",
+ "features.tsv.gz",
+ "genes.tsv",
+ "genes.tsv.gz",
+ ".*genes\\.tsv"
+ )
+)
+barcodes_file <- find_file(opt$input,
+ c("barcodes.tsv", "barcodes.tsv.gz", ".*barcodes\\.tsv"))
+
+# Check if all required files are found
+if (is.null(matrix_file) ||
+ is.null(features_file) || is.null(barcodes_file)) {
+ stop("Unable to find all required input files. Please check your input directory.")
+}
+
+# Read the data
+print("Reading data...")
+data <- ReadMtx(mtx = matrix_file,
+ features = features_file,
+ cells = barcodes_file)
+
+# Create Seurat object
+print("Creating Seurat object...")
+seurat_object <- CreateSeuratObject(
+ counts = data,
+ project = opt$name,
+ min.cells = opt$min_cells,
+ min.features = opt$min_features
+)
+
+#seurat_object[["percent.mt"]] <- PercentageFeatureSet(seurat_object, pattern = "^MT-")
+#seurat_object$log10GenesPerUMI <- log10(seurat_object$nFeature_RNA) / log10(seurat_object$nCount_RNA)
+
+# Normalize data
+print("Normalizing data...")
+seurat_object <- NormalizeData(seurat_object)
+
+# Find variable features
+print("Finding variable features...")
+seurat_object <- FindVariableFeatures(seurat_object,
+ selection.method = "vst",
+ nfeatures = 2000)
+
+# Scale data
+print("Scaling data...")
+all_genes <- rownames(seurat_object)
+seurat_object <- ScaleData(seurat_object, features = all_genes)
+
+# Perform PCA
+print("Running PCA...")
+seurat_object <- RunPCA(seurat_object, features = VariableFeatures(object = seurat_object))
+
+# Cluster the cells
+print("Clustering cells...")
+seurat_object <- FindNeighbors(seurat_object)
+seurat_object <- FindClusters(seurat_object, resolution = opt$resolution)
+
+# Run t-SNE
+print("Running t-SNE...")
+seurat_object <- RunTSNE(seurat_object)
+
+# Create t-SNE plot
+print("Creating t-SNE plot...")
+tsne_plot <- DimPlot(seurat_object, reduction = "tsne", label = TRUE) +
+ ggtitle("t-SNE plot of cell clusters") +
+ theme(plot.title = element_text(hjust = 0.5))
+
+# Save t-SNE plot
+ggsave(
+ file.path(opt$output, "tsne_plot.png"),
+ tsne_plot,
+ width = 10,
+ height = 8,
+ dpi = 300
+)
+
+# Export t-SNE coordinates and cluster information
+print("Exporting t-SNE coordinates and cluster information...")
+tsne_data <- data.frame(
+ cell_id = colnames(seurat_object),
+ cluster = Idents(seurat_object),
+ tSNE_1 = Embeddings(seurat_object, reduction = "tsne")[, 1],
+ tSNE_2 = Embeddings(seurat_object, reduction = "tsne")[, 2]
+)
+
+tsne_files <- save_data(tsne_data, "tsne_data", opt$output)
+
+# Perform differential expression analysis
+print("Performing differential expression analysis...")
+markers <- FindAllMarkers(
+ seurat_object,
+ only.pos = TRUE,
+ min.pct = opt$min_pct,
+ logfc.threshold = opt$logfc_threshold
+)
+top10 <- markers %>% group_by(cluster) %>% top_n(n = 10, wt = avg_log2FC)
+
+# Export top 10 markers
+top10_files <- save_data(top10, "top10_markers", opt$output)
+
+# Perform GSEA
+print("Performing GSEA...")
+# Get gene sets
+m_df <- msigdbr(species = opt$species, category = opt$category)
+fgsea_sets <- m_df %>% split(x = .$gene_symbol, f = .$gs_name)
+
+# Function to perform GSEA for a single cluster
+perform_gsea <- function(cluster) {
+ cluster_markers <- markers %>% filter(cluster == !!cluster) %>% arrange(desc(avg_log2FC))
+ stats <- setNames(cluster_markers$avg_log2FC, cluster_markers$gene)
+ fgsea_result <- fgsea(
+ pathways = fgsea_sets,
+ stats = stats,
+ minSize = opt$gsea_min_size,
+ maxSize = opt$gsea_max_size,
+ scoreType = "pos",
+ nPermSimple = 10000
+ )
+ fgsea_result$cluster <- cluster
+ return(fgsea_result)
+}
+
+# Perform GSEA for each cluster
+gsea_results <- lapply(unique(markers$cluster), perform_gsea)
+gsea_results <- do.call(rbind, gsea_results)
+
+# Export GSEA results
+gsea_files <- save_data(gsea_results, "gsea_results", opt$output)
+
+# Save top pathways for each cluster as JSON
+gsea_cluster_results <- list()
+
+for (cluster in unique(gsea_results$cluster)) {
+ cluster_results <- gsea_results %>%
+ # Filter all results to the current cluster
+ filter(cluster == !!cluster) %>%
+ # Sort by p-value
+ arrange(pval) %>%
+ # Select top 20 pathways
+ head(20) %>%
+ # Select specific columns
+ select(pathway, NES, pval, padj, size) %>%
+ # Round numeric values for compression/readability
+ mutate(across(where(is.numeric), round, digits = 5)) # Round numeric values for readability
+
+ # Set the cluster results in the list
+ gsea_cluster_results[[as.character(cluster)]] <- cluster_results
+}
+
+# Save all cluster results to a single JSON file
+save_data(gsea_cluster_results,
+ "gsea_cluster_results",
+ opt$output,
+ csv = FALSE)
+print("Integrating t-SNE and GSEA results...")
+
+# Get top pathways for each cluster
+# The GSEA results provide pathways enriched in different clusters.
+# This step filters the top 5 pathways with the lowest p-values for each cluster.
+top_pathways <- gsea_results %>%
+ group_by(cluster) %>%
+ top_n(n = 5, wt = -pval) %>%
+ summarise(top_pathways = list(pathway))
+
+# Create a data frame with t-SNE coordinates and cluster information
+# Here, we prepare a data frame that includes essential cell metadata.
+# This data includes the cell ID, cluster assignment, and t-SNE coordinates,
+# which are crucial for visualizing the spatial organization of cells.
+# Including this data helps in correlating gene expression with cellular identity and spatial distribution.
+integrated_data <- data.frame(
+ cell_id = colnames(seurat_object),
+ cluster = Idents(seurat_object),
+ tSNE_1 = Embeddings(seurat_object, reduction = "tsne")[, 1],
+ tSNE_2 = Embeddings(seurat_object, reduction = "tsne")[, 2]
+)
+
+# Add top pathways for each cluster
+# This step merges the top pathways data with the t-SNE coordinates and cluster information.
+# By integrating pathway data, it becomes possible to map enriched pathways to their respective clusters,
+# allowing for a more comprehensive understanding of the biological processes at play within each cluster.
+integrated_data <- integrated_data %>%
+ left_join(top_pathways, by = "cluster") %>%
+ # Ensure 'cluster' is the first column
+ select(cluster, everything())
+
+
+# Calculate cluster centroids
+# Here, the centroids of each cluster in the t-SNE space are calculated.
+# The centroid represents the average position of all cells within a cluster,
+# and can be used as a reference point for cluster location in visualizations.
+# This step is important for summarizing the spatial distribution of clusters.
+cluster_centroids <- integrated_data %>%
+ group_by(cluster) %>%
+ summarise(centroid_x = mean(tSNE_1),
+ centroid_y = mean(tSNE_2))
+
+# Add centroids and top pathways to the cluster information
+# The cluster centroids and top pathways are combined to create a final summary of each cluster.
+# This data will be useful for visualizations and downstream analyses that require cluster-level information.
+# By including both spatial and functional data (pathways), this step ensures that the cluster summaries are comprehensive.
+cluster_info <- cluster_centroids %>%
+ left_join(top_pathways, by = "cluster") %>%
+ select(cluster, everything())
+
+# Save integrated data
+integrated_files <- save_data(integrated_data, "integrated_tsne_gsea", opt$output)
+
+# Save cluster info
+cluster_info_files <- save_data(cluster_info, "cluster_info", opt$output)
+
+print("Integrating cell IDs with gene expression data...")
+
+# Get normalized gene expression data
+# This retrieves the normalized gene expression matrix from the Seurat object.
+# The normalization step is crucial to ensure that differences in gene expression
+# are not due to technical biases but reflect true biological variation.
+gene_expression <- GetAssayData(seurat_object, slot = "data")
+
+# Select top variable genes to reduce data size
+# Here, the most variable genes are selected from the dataset.
+# Focusing on these genes reduces the data size, making downstream analysis
+# more computationally efficient while retaining the most informative features.
+top_genes <- VariableFeatures(seurat_object)
+gene_expression <- gene_expression[top_genes, ]
+
+# Create a summary of average gene expression per cluster
+# This step summarizes gene expression by calculating the average expression
+# of each gene across all cells within the same cluster.
+# Such summaries are valuable for identifying cluster-specific gene expression patterns,
+# which can highlight key biological processes or marker genes for each cluster.
+metadata <- data.frame(
+ cell_id = colnames(seurat_object),
+ cluster = Idents(seurat_object),
+ tSNE_1 = Embeddings(seurat_object, reduction = "tsne")[, 1],
+ tSNE_2 = Embeddings(seurat_object, reduction = "tsne")[, 2]
+)
+
+# Create gene expression dataframe and filter out zeros
+gene_data <- as.data.frame(t(as.matrix(gene_expression)))
+gene_data_filtered <- lapply(1:nrow(gene_data), function(i) {
+ cell_data <- gene_data[i, ]
+ non_zero <- cell_data[cell_data != 0]
+ if (length(non_zero) > 0) {
+ return(as.list(non_zero))
+ } else {
+ return(NULL)
+ }
+})
+
+# Remove NULL entries (cells with no non-zero gene expression)
+gene_data_filtered <- gene_data_filtered[!sapply(gene_data_filtered, is.null)]
+
+# Combine metadata and filtered gene expression data
+cell_gene_data <- list(metadata = metadata, gene_expression = gene_data_filtered)
+
+# Save cell-gene data
+cell_gene_files <- save_data(cell_gene_data, "cell_gene_data", opt$output)
+
+# Create a summary of average gene expression per cluster
+cluster_avg_expression <- gene_expression %>%
+ as.data.frame() %>%
+ t() %>%
+ as.data.frame() %>%
+ mutate(cluster = Idents(seurat_object)) %>%
+ group_by(cluster) %>%
+ summarise(across(everything(), mean))
+
+# Ensure 'cluster' is the first column
+cluster_avg_expression <- cluster_avg_expression %>%
+ select(cluster, everything())
+
+# Save cluster average expression data
+cluster_avg_files <- save_data(cluster_avg_expression, "cluster_avg_expression", opt$output)
+
+# Save the Seurat object
+print("Saving Seurat object...")
+saveRDS(seurat_object, file = file.path(opt$output, paste0(opt$prefix, "seurat_object.rds")))
+
+# Create and save outputs.json
+outputs <- list(
+ seurat_object = paste0(opt$prefix, "seurat_object.rds"),
+ initial_cell_count = ncol(data),
+ final_cell_count = ncol(seurat_object),
+ gene_count = nrow(seurat_object),
+ project_name = opt$name,
+ cluster_count = length(unique(Idents(seurat_object))),
+ tsne_plot = "tsne_plot.png",
+ tsne_data_csv = tsne_files$csv,
+ top_markers_csv = top10_files$csv,
+ gsea_results_csv = gsea_files$csv,
+ integrated_tsne_gsea_csv = integrated_files$csv,
+ cluster_info_csv = cluster_info_files$csv,
+ cell_gene_data_csv = cell_gene_files$csv,
+ cluster_avg_expression_csv = cluster_avg_files$csv
+)
+write_json(outputs, file.path(opt$output, "outputs.json"))
+
+print("Processing complete.")
\ No newline at end of file
diff --git a/src/pipeline/json_convert.py b/src/pipeline/json_convert.py
new file mode 100644
index 0000000..3f207f0
--- /dev/null
+++ b/src/pipeline/json_convert.py
@@ -0,0 +1,43 @@
+"""Script to convert json files to js files"""
+import json
+import sys
+import os
+
+if __name__ == '__main__':
+ if not len(sys.argv) == 3:
+ print('Usage: json_convert.py ')
+ sys.exit(1)
+
+ input_folder = sys.argv[1]
+ output_folder = sys.argv[2]
+
+ # Check if the input folder exists
+ if not os.path.exists(input_folder):
+ print('The input folder does not exist')
+ sys.exit(1)
+
+ # Check if the output folder exists
+ if not os.path.exists(output_folder):
+ os.makedirs(output_folder)
+
+ # Get the json files
+ json_files = [f'{input_folder}/{f}' for f in os.listdir(input_folder) if f.endswith('.json')]
+
+ # Check if there are json files
+ if not json_files:
+ print('There are no json files in the input folder')
+ sys.exit(1)
+
+ # Convert the json files to js files
+ for json_file in json_files:
+ file_name = json_file.split('/')[-1].split('.')[0]
+
+ with open(json_file, 'r') as f:
+ data = json.load(f)
+
+ with open(f'{output_folder}/{file_name}.js', 'w') as f:
+ f.write(f'const {file_name} = {json.dumps(data)};')
+
+ print(f'File {file_name}.js created in {output_folder}')
+
+ sys.exit(0)
\ No newline at end of file
diff --git a/astro/public/favicon.svg b/src/static/favicon.svg
similarity index 100%
rename from astro/public/favicon.svg
rename to src/static/favicon.svg
diff --git a/src/static/index.html b/src/static/index.html
new file mode 100644
index 0000000..3429741
--- /dev/null
+++ b/src/static/index.html
@@ -0,0 +1,109 @@
+
+
+
+
+
+
+
+
+ Visualizations
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/src/static/raw_data/cluster_avg_expression.json b/src/static/raw_data/cluster_avg_expression.json
new file mode 100644
index 0000000..29caf26
--- /dev/null
+++ b/src/static/raw_data/cluster_avg_expression.json
@@ -0,0 +1,24050 @@
+{
+ "0": [
+ {
+ "Nmu": 0.0756,
+ "Grp": 0.036,
+ "Vip": 0.4247,
+ "Penk": 0.2261,
+ "Calcb": 0.0384,
+ "Dcn": 0.1413,
+ "Grm7": 0.1848,
+ "Sgcz": 0.1312,
+ "Kctd16": 0.0602,
+ "Ntng1": 0.0844,
+ "Mgp": 0.137,
+ "Tac1": 0.4151,
+ "Gal": 0.1998,
+ "Nxph2": 0.0113,
+ "Klhl1": 0.0609,
+ "Sst": 0.1087,
+ "Mgat4c": 0.0578,
+ "Bglap": 0.2592,
+ "Myh11": 0.2229,
+ "Lum": 0.0491,
+ "Ano5": 0.0263,
+ "Ccl21a": 0.0428,
+ "Cntn5": 0.1592,
+ "Scgn": 0.0437,
+ "Cd24a": 0.2885,
+ "Acta2": 0.3084,
+ "Tmeff2": 0.0442,
+ "Npy": 0.0469,
+ "Kcnh7": 0.0509,
+ "Actg2": 0.3355,
+ "Ebf1": 0.047,
+ "Cartpt": 0.1597,
+ "Mt3": 0.4746,
+ "Calb2": 0.4025,
+ "Kctd8": 0.0435,
+ "Cck": 0,
+ "Serpini1": 0.0682,
+ "Col1a2": 0.2942,
+ "H2-Aa": 0.0623,
+ "Cd74": 0.0497,
+ "Nnat": 0.0954,
+ "Bglap2": 0.1257,
+ "Dbh": 0.0914,
+ "Col25a1": 0.0453,
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+ "Pcsk5": 0.0081,
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+ "Crabp1": 0.0675,
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+ "H2-Ab1": 0.0518,
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+ "Kit": 0,
+ "Myl1": 0.0355,
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+ "Pcp4l1": 0.0658,
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+ "Gja1": 0.019,
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+ "Zfp804a": 0.109,
+ "Adcyap1": 0.0119,
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+ "Fmo2": 0.0243,
+ "Fut9": 0.0051,
+ "Brinp3": 0.4951,
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+ "Nrxn3": 0.3367,
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+ "Igfbp3": 0,
+ "Cdh12": 0.103,
+ "Frmpd4": 0.2145,
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+ "Tuba1a": 1.4399,
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+ "Gucy2g": 0,
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+ "Fibcd1": 0.0323,
+ "Hsp90aa1": 0.4239,
+ "Rtp3": 0.0156,
+ "Sh3bgrl3": 0.1927,
+ "Galnt18": 0.5357,
+ "Chat": 0.0107,
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+ "Id4": 0,
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+ "Chga": 0.075,
+ "Cdh6": 0.2413,
+ "Tmem130": 0.0287,
+ "Bex2": 0.325,
+ "Ngb": 0.1113,
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+ "Zcchc12": 0.1266,
+ "Gnas": 1.1723,
+ "Thbs1": 0.0139,
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+ "Neurod6": 0,
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+ "Ctsc": 0.0296,
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diff --git a/src/static/raw_data/cluster_info.json b/src/static/raw_data/cluster_info.json
new file mode 100644
index 0000000..e97f05e
--- /dev/null
+++ b/src/static/raw_data/cluster_info.json
@@ -0,0 +1,86 @@
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diff --git a/src/static/raw_data/gsea_cluster_results.json b/src/static/raw_data/gsea_cluster_results.json
new file mode 100644
index 0000000..38a66e4
--- /dev/null
+++ b/src/static/raw_data/gsea_cluster_results.json
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+}
diff --git a/src/static/raw_data/gsea_results.json b/src/static/raw_data/gsea_results.json
new file mode 100644
index 0000000..88a7a81
--- /dev/null
+++ b/src/static/raw_data/gsea_results.json
@@ -0,0 +1,165827 @@
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+ "leadingEdge": ["Ptchd1", "Pak3", "Ap1s2", "Ophn1", "Ocrl", "Slc9a7", "Rpgr", "Hcfc1", "Sms", "Fgf13"],
+ "cluster": "11"
+ }
+]
diff --git a/src/static/raw_data/integrated_tsne_gsea.json b/src/static/raw_data/integrated_tsne_gsea.json
new file mode 100644
index 0000000..699fd07
--- /dev/null
+++ b/src/static/raw_data/integrated_tsne_gsea.json
@@ -0,0 +1,9998 @@
+{
+ "0": [
+ {
+ "cell_id": "AAACCTGAGCGAGAAA-1",
+ "tSNE_1": 3.0588,
+ "tSNE_2": 5.7961,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAACCTGTCAAGCCTA-1",
+ "tSNE_1": 1.6345,
+ "tSNE_2": 0.2824,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAAGTAGAGCAGACTG-1",
+ "tSNE_1": 16.5875,
+ "tSNE_2": 16.2679,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAAGTAGGTGGTTTCA-1",
+ "tSNE_1": 11.0182,
+ "tSNE_2": 2.7438,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAAGTAGTCGAATGCT-1",
+ "tSNE_1": -4.1401,
+ "tSNE_2": 6.0413,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAATGCCAGGCAGTCA-1",
+ "tSNE_1": 11.8124,
+ "tSNE_2": 13.2772,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AACTCAGCATGGTCAT-1",
+ "tSNE_1": 16.3828,
+ "tSNE_2": 7.9102,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AACTCCCAGCTAACTC-1",
+ "tSNE_1": 9.0482,
+ "tSNE_2": 6.5585,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AACTCCCGTGACTCAT-1",
+ "tSNE_1": 2.0082,
+ "tSNE_2": 7.0523,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AACTTTCTCCCTCAGT-1",
+ "tSNE_1": -3.9733,
+ "tSNE_2": 0.7917,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAGCCGCGTGGAAAGA-1",
+ "tSNE_1": 9.319,
+ "tSNE_2": 6.5376,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAGGTTCTCTAGAGTC-1",
+ "tSNE_1": -3.0622,
+ "tSNE_2": 2.3705,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAGTCTGAGTACGTTC-1",
+ "tSNE_1": 16.3666,
+ "tSNE_2": 15.2537,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACACCAATCCAGTAGT-1",
+ "tSNE_1": 12.7255,
+ "tSNE_2": 10.6793,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACACCGGCAGCGTCCA-1",
+ "tSNE_1": 9.0146,
+ "tSNE_2": 12.2136,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACATGGTGTCTAGCCG-1",
+ "tSNE_1": 25.2224,
+ "tSNE_2": 13.4774,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACCAGTACAGGGTATG-1",
+ "tSNE_1": -4.5571,
+ "tSNE_2": 3.7311,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGATACTCCGTTGTC-1",
+ "tSNE_1": 20.8542,
+ "tSNE_2": 10.0437,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGCAGCGTGGCCCTA-1",
+ "tSNE_1": 0.4386,
+ "tSNE_2": 3.9144,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGGAGACAGACAAAT-1",
+ "tSNE_1": -7.4387,
+ "tSNE_2": 1.2152,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGGGTCGTAAGGGAA-1",
+ "tSNE_1": -2.9881,
+ "tSNE_2": -7.2492,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTGAACCACGACGAA-1",
+ "tSNE_1": -5.7794,
+ "tSNE_2": 5.617,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTGCTCTCGCCCTTA-1",
+ "tSNE_1": -1.2535,
+ "tSNE_2": 0.5619,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTGTCCAGGTGCACA-1",
+ "tSNE_1": -7.655,
+ "tSNE_2": 1.2594,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTTACTAGGCAATTA-1",
+ "tSNE_1": 15.5111,
+ "tSNE_2": 5.6597,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTTGTTGTCGCCATG-1",
+ "tSNE_1": -1.9271,
+ "tSNE_2": 4.2591,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGAGCGATCGCCTGAG-1",
+ "tSNE_1": -1.8594,
+ "tSNE_2": -1.4458,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGATCTGTCCCACTTG-1",
+ "tSNE_1": -4.4861,
+ "tSNE_2": -4.802,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGATTGCTCTGTTGAG-1",
+ "tSNE_1": -7.2045,
+ "tSNE_2": 11.3823,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGCAGCCTCTAACTTC-1",
+ "tSNE_1": 1.9459,
+ "tSNE_2": 6.0096,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGCCTAACATGCGCAC-1",
+ "tSNE_1": 11.9858,
+ "tSNE_2": 9.2901,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGGATGCAAGCCGTC-1",
+ "tSNE_1": -3.9008,
+ "tSNE_2": -6.3465,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGGTGAAGCCTCGTG-1",
+ "tSNE_1": -2.5554,
+ "tSNE_2": -1.0101,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCATGTCTCTTTA-1",
+ "tSNE_1": -6.093,
+ "tSNE_2": 8.1263,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCATTCTACTATC-1",
+ "tSNE_1": -2.2669,
+ "tSNE_2": 4.5815,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGTGGGACAACTTGAC-1",
+ "tSNE_1": -6.862,
+ "tSNE_2": -0.5058,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATAACGCAGGACACCA-1",
+ "tSNE_1": -4.6159,
+ "tSNE_2": -0.6455,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATTTCTGGTTCAGTAC-1",
+ "tSNE_1": 8.5621,
+ "tSNE_2": 2.7961,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAACCTCCAGCCAATT-1",
+ "tSNE_1": 11.0128,
+ "tSNE_2": 6.7772,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAAGGCCTCATCGGAT-1",
+ "tSNE_1": -2.0851,
+ "tSNE_2": 4.6723,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAAGTTGTCGGTTAAC-1",
+ "tSNE_1": -5.2923,
+ "tSNE_2": -1.095,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACAGGCCACTCAGGC-1",
+ "tSNE_1": 13.3107,
+ "tSNE_2": 3.4977,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACAGGCCACTGTTAG-1",
+ "tSNE_1": 14.652,
+ "tSNE_2": 17.4945,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACATTTCAGTTCCCT-1",
+ "tSNE_1": 23.8737,
+ "tSNE_2": 21.8145,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACTCCAGTACTTAGC-1",
+ "tSNE_1": 22.7811,
+ "tSNE_2": 10.4297,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGAATCGTGGTACAG-1",
+ "tSNE_1": 1.9696,
+ "tSNE_2": 0.7313,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATCAGAGTTCACGGC-1",
+ "tSNE_1": 14.4998,
+ "tSNE_2": 19.5937,
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+ },
+ {
+ "cell_id": "CATCCACCAATGGACG-1",
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+ "tSNE_2": -4.2508,
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+ },
+ {
+ "cell_id": "CATCCACTCACGCATA-1",
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+ "tSNE_2": 0.823,
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+ },
+ {
+ "cell_id": "CATGACAAGATAGCAT-1",
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+ "tSNE_2": 2.2842,
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+ },
+ {
+ "cell_id": "CATGGCGTCAGTCCCT-1",
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+ "tSNE_2": 6.9273,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATTCGCAGCACCGTC-1",
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+ "tSNE_2": 6.9068,
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+ },
+ {
+ "cell_id": "CCAATCCTCCACGTGG-1",
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+ "tSNE_2": -1.6567,
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+ },
+ {
+ "cell_id": "CCACCTAGTCATCGGC-1",
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+ "tSNE_2": 12.5977,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "CCCAGTTGTTCCCTTG-1",
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+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCCTCCTCACTCTGTC-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "CCGGTAGCAATCGGTT-1",
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+ "tSNE_2": -1.7792,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCGGTAGGTATCAGTC-1",
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+ "tSNE_2": -1.4663,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCGTTCAAGGCGTACA-1",
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+ "tSNE_2": 20.7838,
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+ },
+ {
+ "cell_id": "CCTCTGACAATGTTGC-1",
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+ "tSNE_2": -1.2665,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGACCTTGTTCGCGAC-1",
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+ "tSNE_2": 14.744,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGCACAGGACAGCT-1",
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+ "tSNE_2": 1.1124,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGCCAAGCCACGCT-1",
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+ "tSNE_2": 19.8341,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGCCATCCGCGCAA-1",
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+ "tSNE_2": 6.6502,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATCGGCACTACAGT-1",
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+ "tSNE_2": 16.5339,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATTGAGTCGATTGT-1",
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+ "tSNE_2": 9.411,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGCCAAGTCAACGGCC-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGCGGTAGTCTGGAGA-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTAGGCGTAGCTAAA-1",
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+ "tSNE_2": -6.5872,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTGAGCGTCATATGC-1",
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+ "tSNE_2": 11.0357,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTTCTGTCCTTCAAT-1",
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+ "tSNE_2": 5.8113,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTACACCGTATAGGTA-1",
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+ "tSNE_2": 2.6068,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTACCCAAGGCCATAG-1",
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+ "tSNE_2": 4.4845,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTACCCATCTTGACGA-1",
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+ "tSNE_2": -8.689,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTAGTGACACAAGTAA-1",
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+ "tSNE_2": 0.7819,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCCTAGGTCCGAATT-1",
+ "tSNE_1": -4.6447,
+ "tSNE_2": -2.4229,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCGAAACAAGGCTCC-1",
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+ "tSNE_2": 3.7342,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCGAGGCACCGCTAG-1",
+ "tSNE_1": -1.8105,
+ "tSNE_2": 1.0542,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCGTACAGGAGTAGA-1",
+ "tSNE_1": 10.0281,
+ "tSNE_2": 6.4379,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTGATCCTCAACGAAA-1",
+ "tSNE_1": -2.584,
+ "tSNE_2": -3.5095,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTGGTCTTCAGGATCT-1",
+ "tSNE_1": -4.1505,
+ "tSNE_2": -2.5311,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTTAACTGTTCTGTTT-1",
+ "tSNE_1": -3.205,
+ "tSNE_2": 1.3124,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAAACTCAGTCCCACG-1",
+ "tSNE_1": -2.9872,
+ "tSNE_2": -8.2228,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAATGAAAGCTGCGAA-1",
+ "tSNE_1": 2.7947,
+ "tSNE_2": 6.4662,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GACGTTATCGAATGCT-1",
+ "tSNE_1": -3.1471,
+ "tSNE_2": -5.7865,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAGCAGACAGACACTT-1",
+ "tSNE_1": -7.4508,
+ "tSNE_2": 1.0288,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAGGTGAAGCCGGTAA-1",
+ "tSNE_1": 1.3321,
+ "tSNE_2": -2.1869,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GATCAGTGTTGGAGGT-1",
+ "tSNE_1": 13.3889,
+ "tSNE_2": 10.9117,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GATCGCGCACATTCGA-1",
+ "tSNE_1": -0.5888,
+ "tSNE_2": -1.0368,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCACATAAGTAGCCGA-1",
+ "tSNE_1": 3.8253,
+ "tSNE_2": 1.526,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCACTCTCATACCATG-1",
+ "tSNE_1": 25.5458,
+ "tSNE_2": 11.7842,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "GCCTCTATCAGTCCCT-1",
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+ "tSNE_2": -1.7267,
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+ },
+ {
+ "cell_id": "GCGCAGTGTGTTTGTG-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCGCCAATCCAGTAGT-1",
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+ "tSNE_2": -1.4449,
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+ },
+ {
+ "cell_id": "GCGCGATAGACTTTCG-1",
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+ },
+ {
+ "cell_id": "GCTCCTAGTCTTCGTC-1",
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+ },
+ {
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+ "tSNE_2": 6.2008,
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
+ "cell_id": "GGACAGACATCACAAC-1",
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+ },
+ {
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+ },
+ {
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+ },
+ {
+ "cell_id": "GGCGACTTCTCGAGTA-1",
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+ },
+ {
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+ },
+ {
+ "cell_id": "GGGACCTTCCTCAATT-1",
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+ },
+ {
+ "cell_id": "GGGATGAGTCTAACGT-1",
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+ },
+ {
+ "cell_id": "GGGCACTAGTGAACGC-1",
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+ },
+ {
+ "cell_id": "GGGCATCGTACAGACG-1",
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+ },
+ {
+ "cell_id": "GGTGTTAGTCCGAGTC-1",
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": 4.0939,
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+ },
+ {
+ "cell_id": "GTATTCTAGGAATTAC-1",
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+ "tSNE_2": 13.3106,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTATTCTGTAAGAGGA-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTCCTCACAATCCGAT-1",
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+ "tSNE_2": -8.8324,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTCCTCAGTGGAAAGA-1",
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+ "tSNE_2": 8.6084,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTGCAGCGTAGCGTCC-1",
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+ "tSNE_2": 12.7782,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTGCATACACTTAAGC-1",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTTAAGCTCTGTTTGT-1",
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+ "tSNE_2": 5.8965,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTTCGGGCATAGACTC-1",
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+ "tSNE_2": 3.6294,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTTCGGGTCATGTCTT-1",
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+ "tSNE_2": 8.2321,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTTTCTATCGTTGCCT-1",
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+ "tSNE_2": -0.597,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAAACCGAGACCGGAT-1",
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+ "tSNE_2": 6.5622,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAAACCGCAAAGCAAT-1",
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+ "tSNE_2": -4.7846,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAAGAGAGTGAGTGAC-1",
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+ "tSNE_2": 8.4579,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TACACGACATGTAAGA-1",
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+ "tSNE_2": 8.4136,
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+ },
+ {
+ "cell_id": "TACTTGTGTACCGGCT-1",
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+ },
+ {
+ "cell_id": "TAGCCGGAGGCATGGT-1",
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+ "tSNE_2": 9.8102,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAGGCATTCCCATTTA-1",
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+ "tSNE_2": 6.2271,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAGTGGTGTGCGGTAA-1",
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+ "tSNE_2": -8.1566,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TATTACCGTTCAGGCC-1",
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+ "tSNE_2": 11.8066,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAACGAGTACGCACC-1",
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+ "tSNE_2": -4.5316,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAATCTCAACTTGAC-1",
+ "tSNE_1": -3.119,
+ "tSNE_2": -6.1015,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAATCTGTGCCTGCA-1",
+ "tSNE_1": -3.3429,
+ "tSNE_2": -2.8054,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGAGGCGTCCAGTGC-1",
+ "tSNE_1": 3.5959,
+ "tSNE_2": 6.8413,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGGTAAGTTAAGTAG-1",
+ "tSNE_1": 1.5275,
+ "tSNE_2": 0.0028,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGTACCTCACCAGGC-1",
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+ "tSNE_2": -8.0866,
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+ },
+ {
+ "cell_id": "TCTCATAGTATTCGTG-1",
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+ "tSNE_2": 7.8922,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCTCATATCGGAGCAA-1",
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+ "tSNE_2": 10.2887,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCTGGAACAATGAATG-1",
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+ "tSNE_2": 6.5833,
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+ },
+ {
+ "cell_id": "TCTTTCCAGAATTCCC-1",
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+ "tSNE_2": 5.8761,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGACGGCGTGGTAACG-1",
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+ "tSNE_2": 17.0028,
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+ },
+ {
+ "cell_id": "TGACTAGTCTGTGCAA-1",
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+ "tSNE_2": -4.9135,
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+ },
+ {
+ "cell_id": "TGGCCAGAGCCTTGAT-1",
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+ "tSNE_2": 11.5147,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TTAACTCGTCGCATAT-1",
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+ },
+ {
+ "cell_id": "TTAGGCACAAGCGTAG-1",
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+ "tSNE_2": 0.0686,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -7.7594,
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+ },
+ {
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+ },
+ {
+ "cell_id": "AAAGCAAAGTCTCGGC-2",
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+ },
+ {
+ "cell_id": "AACCATGAGATCCTGT-2",
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+ },
+ {
+ "cell_id": "AACGTTGCACATGGGA-2",
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+ "tSNE_2": 2.3611,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "AACTGGTTCGGCCGAT-2",
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+ "tSNE_2": 6.6482,
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": 9.7021,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AATCCAGGTCTAAAGA-2",
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+ "tSNE_2": 0.2954,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 4.9018,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGGGCTCATCTATGG-2",
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+ "tSNE_2": 12.5312,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGAATAGGTGATAAAC-2",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGATCTGAGTGAAGTT-2",
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+ "tSNE_2": -1.6855,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGCTCTCCAACCGCCA-2",
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+ "tSNE_2": 6.7351,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGCCACAGACAGGCT-2",
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+ "tSNE_2": 3.4088,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCCGAGTGGGCTA-2",
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+ "tSNE_2": 10.7849,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCCGCAGGTCTCG-2",
+ "tSNE_1": 5.5838,
+ "tSNE_2": -1.9751,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCCGTCAGCACAT-2",
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+ "tSNE_2": 3.5939,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGTCTTTCATAGAAAC-2",
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+ "tSNE_2": 0.7432,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGTGGGAGTCTTGATG-2",
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+ "tSNE_2": 14.0278,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATAAGAGCACAGTCGC-2",
+ "tSNE_1": -4.4337,
+ "tSNE_2": -1.5489,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATAAGAGTCGGACAAG-2",
+ "tSNE_1": 10.1629,
+ "tSNE_2": 4.5875,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATGAGGGGTTGTACAC-2",
+ "tSNE_1": 3.0493,
+ "tSNE_2": 3.1616,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAACCAAGTTCAGCGC-2",
+ "tSNE_1": 16.2003,
+ "tSNE_2": 3.2552,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAACTAGAGGGTCTCC-2",
+ "tSNE_1": 23.5398,
+ "tSNE_2": 10.9089,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACTCCATCGCGTAGC-2",
+ "tSNE_1": -3.8499,
+ "tSNE_2": -4.4422,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGCGACTCACAATGC-2",
+ "tSNE_1": 2.4724,
+ "tSNE_2": 3.5538,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGTAACCAGGAATGC-2",
+ "tSNE_1": -1.3195,
+ "tSNE_2": 1.2673,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATATTCCAAACTGCT-2",
+ "tSNE_1": 11.3706,
+ "tSNE_2": 5.8471,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATTATCTCGGTTCGG-2",
+ "tSNE_1": 2.9793,
+ "tSNE_2": 0.4117,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATTCGCGTCGGCATC-2",
+ "tSNE_1": 13.5072,
+ "tSNE_2": 10.9377,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCATGTCCAGACGCAA-2",
+ "tSNE_1": 14.8279,
+ "tSNE_2": -1.6377,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCCAATCAGCGTCAAG-2",
+ "tSNE_1": 9.3703,
+ "tSNE_2": 4.7126,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "CCGGTAGGTAATAGCA-2",
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+ "tSNE_2": 2.4127,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCTATTACATCCAACA-2",
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+ "tSNE_2": 1.9973,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGCCAGTCCAGTGC-2",
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+ "tSNE_2": -2.7416,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATGGCGTTATTCTC-2",
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+ "tSNE_2": 11.3211,
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+ },
+ {
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+ "tSNE_2": 4.9162,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTGTAATCGCAAACT-2",
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+ "tSNE_2": 10.8627,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTTCTGCAAGCGAGT-2",
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 0.4568,
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+ },
+ {
+ "cell_id": "CTGTTTATCGAGCCCA-2",
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+ "tSNE_2": 0.55,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
+ "cell_id": "CTTACCGAGATTACCC-2",
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+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GACGTTATCATTATCC-2",
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+ "tSNE_2": 4.7286,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 19.3742,
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+ },
+ {
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+ },
+ {
+ "cell_id": "GAGTCCGTCAGCTGGC-2",
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+ "tSNE_2": 6.819,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": -5.8634,
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+ },
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+ "cell_id": "GCCTCTAGTCTGATTG-2",
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+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCTTGAATCGTCGTTC-2",
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+ "tSNE_2": -0.8434,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGATTACGTCATGCAT-2",
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+ },
+ {
+ "cell_id": "GGCCGATGTCCCGACA-2",
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+ "tSNE_2": -1.1404,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGCGTGTCATGACGGA-2",
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+ "tSNE_2": -8.4857,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGTGTTAAGACCCACC-2",
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+ "tSNE_2": 1.4309,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTCATTTGTTAGATGA-2",
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+ "tSNE_2": 1.8917,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
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+ "cell_id": "GTTTCTAAGGAATCGC-2",
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+ "tSNE_2": 1.1958,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 9.9594,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TAAGAGACACCTTGTC-2",
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+ "tSNE_2": -5.8981,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 0.6637,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 11.418,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAGCTCAGTGTTGAA-2",
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+ "tSNE_2": 1.4329,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAGCTCAGTTTCCTT-2",
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+ "tSNE_2": 3.3934,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAGGTACACAGGAGT-2",
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+ "tSNE_2": -1.0732,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCATTACCACGGTTTA-2",
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+ "tSNE_2": 6.879,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCCCGATTCTTGCCGT-2",
+ "tSNE_1": 12.8563,
+ "tSNE_2": 2.8217,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGCGAGAGGGTCGAT-2",
+ "tSNE_1": 2.0709,
+ "tSNE_2": -1.9012,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGTAGAAGTGGTCCC-2",
+ "tSNE_1": -3.683,
+ "tSNE_2": -2.3986,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCTGAGAGTCGCTTCT-2",
+ "tSNE_1": 4.7232,
+ "tSNE_2": 18.9623,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGACGGCTCTCAACTT-2",
+ "tSNE_1": 5.0295,
+ "tSNE_2": 1.3744,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGATTTCCACAACTGT-2",
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+ "tSNE_2": 6.9918,
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+ },
+ {
+ "cell_id": "TGATTTCCAGGCGATA-2",
+ "tSNE_1": -0.1084,
+ "tSNE_2": 0.6238,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGCGCAGTCACCCGAG-2",
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+ "tSNE_2": 2.9244,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGCTGCTCATTTCACT-2",
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+ "tSNE_2": 9.0192,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGGCCAGTCAGTTCGA-2",
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+ "tSNE_2": -3.047,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGGCTGGAGAAGAAGC-2",
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+ "tSNE_2": 0.3163,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGGCTGGCAGGAACGT-2",
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+ "tSNE_2": 5.8941,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TTAACTCGTTTAGGAA-2",
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+ "tSNE_2": 6.2862,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 5.814,
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+ },
+ {
+ "cell_id": "TTGCCGTTCAACGAAA-2",
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+ "tSNE_2": 2.4216,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 13.1548,
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+ },
+ {
+ "cell_id": "TTTATGCAGATAGGAG-2",
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+ "tSNE_2": 5.8459,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "AATCGGTGTCTCCATC-3",
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+ "tSNE_2": 8.9737,
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+ },
+ {
+ "cell_id": "ACACTGAGTGGGTATG-3",
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+ "tSNE_2": 2.5144,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": -8.7832,
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+ },
+ {
+ "cell_id": "ACCCACTTCTTACCGC-3",
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+ "tSNE_2": 3.027,
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+ },
+ {
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+ "tSNE_2": 10.6759,
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+ },
+ {
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+ "tSNE_2": 4.8018,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTTGTTAGTACATGA-3",
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+ "tSNE_2": 5.46,
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+ },
+ {
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+ "tSNE_2": 3.7987,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 0.545,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGTGAGGCAAGACGTG-3",
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+ "tSNE_2": 0.9875,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 6.4095,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ },
+ {
+ "cell_id": "ATGGGAGTCATGCTCC-3",
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+ "tSNE_2": 10.3212,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATTTCTGAGCTGGAAC-3",
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+ "tSNE_2": 5.2135,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATTTCTGCAAGCCATT-3",
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+ "tSNE_2": 7.5843,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CACACCTAGGTGGGTT-3",
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+ "tSNE_2": 7.9594,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 3.2111,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATATGGGTTCGTTGA-3",
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+ "tSNE_2": 2.5884,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 2.6935,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGACCTTAGTTCCACA-3",
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+ "tSNE_2": 12.9762,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATCGGAGAGATGAG-3",
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+ "tSNE_2": 16.8116,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATCGGGTACTTCTT-3",
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+ "tSNE_2": 6.9264,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGGTTAACAAATACAG-3",
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+ "tSNE_2": -0.5262,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGTAGCGTCGACAGCC-3",
+ "tSNE_1": 7.8003,
+ "tSNE_2": 8.5833,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTAAGACGTGCATCTA-3",
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+ "tSNE_2": 12.6972,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
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+ "tSNE_2": 7.1992,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTACATTAGGAATGGA-3",
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+ "tSNE_2": -1.7799,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTACATTCAGATGGGT-3",
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+ "tSNE_2": 4.9398,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCACACCATGCCTAA-3",
+ "tSNE_1": -3.0464,
+ "tSNE_2": 6.5004,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTCTAATCACTCGACG-3",
+ "tSNE_1": 16.6719,
+ "tSNE_2": 14.8615,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTGATAGGTGTGGCTC-3",
+ "tSNE_1": 8.6933,
+ "tSNE_2": 13.3203,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CTTGGCTCAATGAAAC-3",
+ "tSNE_1": 1.6106,
+ "tSNE_2": 0.9992,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAATAAGGTCTTCGTC-3",
+ "tSNE_1": 6.971,
+ "tSNE_2": 17.4645,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAGGTGATCAGTCCCT-3",
+ "tSNE_1": 0.558,
+ "tSNE_2": -4.6452,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GATGCTATCACGAAGG-3",
+ "tSNE_1": -2.2172,
+ "tSNE_2": -4.9135,
+ "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCACATAGTCTGATTG-3",
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ ],
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
+ {
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+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 20.9228,
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+ },
+ {
+ "cell_id": "CCGTTCAGTAACGACG-1",
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+ "tSNE_2": 9.2687,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTACCAGTTTCGCTC-1",
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+ "tSNE_2": 19.524,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ "tSNE_2": 22.0159,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ },
+ {
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+ "tSNE_2": 3.7972,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCAACGATCATGTAGC-3",
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+ "tSNE_2": 14.121,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_1": 10.7323,
+ "tSNE_2": 14.5442,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCAGCAACAGCATACT-3",
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+ "tSNE_2": 20.4651,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_1": 6.1217,
+ "tSNE_2": 14.6331,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_1": 1.3732,
+ "tSNE_2": 13.8352,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_1": 9.7219,
+ "tSNE_2": 24.155,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 8.5222,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCGTGGAGAGCTTCT-3",
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+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 12.4366,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_1": -0.5066,
+ "tSNE_2": 13.5501,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 2.9442,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTGCCGTAGAGCTGGT-3",
+ "tSNE_1": 3.6905,
+ "tSNE_2": 13.5885,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTGCCGTGTATTCGTG-3",
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+ "tSNE_2": 15.6867,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 21.3262,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTGTAGGCAGGCTCAC-3",
+ "tSNE_1": 6.1261,
+ "tSNE_2": 9.6196,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": 19.0513,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTTGCGCAGAAGAAGC-3",
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+ "tSNE_2": 11.2445,
+ "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]
+ }
+ ],
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+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -1.9763,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AAGCCGCTCGGAGGTA-1",
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+ "tSNE_2": -9.0627,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -12.6641,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -11.1829,
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+ },
+ {
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+ "tSNE_2": -5.5214,
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+ },
+ {
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+ "tSNE_2": -13.6558,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACGAGCCAGGCAGGTT-1",
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+ "tSNE_2": -12.6842,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACGAGGATCAGTGCAT-1",
+ "tSNE_1": -36.038,
+ "tSNE_2": -7.3662,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACGCCGATCCACGAAT-1",
+ "tSNE_1": -24.7217,
+ "tSNE_2": -6.1868,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTGAACCAGCGATCC-1",
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+ "tSNE_2": -4.2142,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTTTCAAGAGGTAGA-1",
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+ "tSNE_2": -7.5741,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGATCTGAGCTAACAA-1",
+ "tSNE_1": -24.6648,
+ "tSNE_2": -4.4303,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGATCTGCACGGTGTC-1",
+ "tSNE_1": -37.0386,
+ "tSNE_2": -1.0784,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGCGTATAGAAGGTTT-1",
+ "tSNE_1": -38.0323,
+ "tSNE_2": -2.4026,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGCTCTCTCACTATTC-1",
+ "tSNE_1": -32.0145,
+ "tSNE_2": -8.5794,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGGGTGACAAACTGTC-1",
+ "tSNE_1": -24.5117,
+ "tSNE_2": -8.6421,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGGTCATAGTACGCCC-1",
+ "tSNE_1": -34.8388,
+ "tSNE_2": -9.8463,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGTAGTCAGGTGACCA-1",
+ "tSNE_1": -26.0131,
+ "tSNE_2": -6.3219,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATAACGCTCGAATCCA-1",
+ "tSNE_1": -33.4806,
+ "tSNE_2": -13.2081,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATAGACCAGTGTCCCG-1",
+ "tSNE_1": -37.7656,
+ "tSNE_2": -0.7472,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCATCTCAAGTCTGT-1",
+ "tSNE_1": -33.5812,
+ "tSNE_2": -12.3815,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCATCTCATTCTTAC-1",
+ "tSNE_1": -24.847,
+ "tSNE_2": -5.1022,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCGAGTTCAGCATGT-1",
+ "tSNE_1": -37.2323,
+ "tSNE_2": -1.1417,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCTACTTCGAATGCT-1",
+ "tSNE_1": -14.1435,
+ "tSNE_2": -26.5711,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAACCTCCATCGGACC-1",
+ "tSNE_1": -36.0628,
+ "tSNE_2": -2.1663,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAACTAGCAGACGCAA-1",
+ "tSNE_1": -34.3672,
+ "tSNE_2": -9.9528,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACAAACCAGATGAGC-1",
+ "tSNE_1": -24.6423,
+ "tSNE_2": -8.5442,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACCTTGCACAGATTC-1",
+ "tSNE_1": -37.4137,
+ "tSNE_2": -7.6708,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGATCACATATGGTC-1",
+ "tSNE_1": -38.1737,
+ "tSNE_2": -1.5599,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATATGGTCACGACTA-1",
+ "tSNE_1": -37.6793,
+ "tSNE_2": -6.8267,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATCGAAAGGGTCTCC-1",
+ "tSNE_1": -37.2871,
+ "tSNE_2": -8.3885,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATGCCTCAAGAGTCG-1",
+ "tSNE_1": -37.1126,
+ "tSNE_2": -5.4106,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATGGCGGTCGCGAAA-1",
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+ "tSNE_2": -6.6008,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCACCTATCGCAAACT-1",
+ "tSNE_1": -38.2637,
+ "tSNE_2": -1.455,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCCAGTTAGAGAACAG-1",
+ "tSNE_1": -33.5953,
+ "tSNE_2": -7.6495,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCCTCCTAGAAACGCC-1",
+ "tSNE_1": -33.199,
+ "tSNE_2": -11.0282,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCGTGGAAGAGTACAT-1",
+ "tSNE_1": -34.745,
+ "tSNE_2": -4.9204,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAACATGTAAAGTCA-1",
+ "tSNE_1": -21.9242,
+ "tSNE_2": -8.7764,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGACTTCAGGGCTTCC-1",
+ "tSNE_1": -13.4471,
+ "tSNE_2": -26.6017,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAGAAGTCGGCTACG-1",
+ "tSNE_1": -30.348,
+ "tSNE_2": -13.5459,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAGCACGTATCTGCA-1",
+ "tSNE_1": -25.325,
+ "tSNE_2": -7.4017,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAGCCAAGCTACCTA-1",
+ "tSNE_1": -36.9141,
+ "tSNE_2": -1.5088,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAGCCATCGGAAATA-1",
+ "tSNE_1": -37.9643,
+ "tSNE_2": -4.2917,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGATTGACATTCCTCG-1",
+ "tSNE_1": -37.8827,
+ "tSNE_2": -5.1868,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGCTTCACACGACTCG-1",
+ "tSNE_1": -38.0528,
+ "tSNE_2": -3.8456,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGCTTCATCCCAAGAT-1",
+ "tSNE_1": -25.7523,
+ "tSNE_2": -7.7067,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGGAGCTTCACGCATA-1",
+ "tSNE_1": -37.2932,
+ "tSNE_2": -6.7243,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGTGAGCGTTGTTTGG-1",
+ "tSNE_1": -37.3989,
+ "tSNE_2": -5.5977,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGTTGGGAGCTAAGAT-1",
+ "tSNE_1": -33.7175,
+ "tSNE_2": -12.0124,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCGAAACACGGACAA-1",
+ "tSNE_1": -35.3897,
+ "tSNE_2": -10.8452,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCGAAATCGTCTGCT-1",
+ "tSNE_1": -32.0778,
+ "tSNE_2": -14.3783,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTGTGCTTCCGATATG-1",
+ "tSNE_1": -32.4717,
+ "tSNE_2": -13.2529,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTTACCGCATACTCTT-1",
+ "tSNE_1": -24.4866,
+ "tSNE_2": -7.1169,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACCTGGAGGCTACGA-1",
+ "tSNE_1": -24.1478,
+ "tSNE_2": -2.3049,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACGTTAGTAAGGATT-1",
+ "tSNE_1": -34.1487,
+ "tSNE_2": -11.6502,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACGTTAGTCGAGTTT-1",
+ "tSNE_1": -33.6864,
+ "tSNE_2": -11.563,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACTAACCAGGTCTCG-1",
+ "tSNE_1": -35.298,
+ "tSNE_2": -10.5196,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACTACAGTCTGATTG-1",
+ "tSNE_1": -34.2863,
+ "tSNE_2": -11.4407,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAGGTGACACATCCGG-1",
+ "tSNE_1": -35.4758,
+ "tSNE_2": -2.9972,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAGGTGATCTCGAGTA-1",
+ "tSNE_1": -32.2645,
+ "tSNE_2": -14.6411,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GATCAGTTCTTGTCAT-1",
+ "tSNE_1": -31.0342,
+ "tSNE_2": -14.5482,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GATCGATGTCACAAGG-1",
+ "tSNE_1": -34.9223,
+ "tSNE_2": -10.9496,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GATCGCGCACGGTGTC-1",
+ "tSNE_1": -37.0751,
+ "tSNE_2": -1.4807,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCATGCGTCCTTTCTC-1",
+ "tSNE_1": -37.2978,
+ "tSNE_2": -7.422,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCATGTACATGGGAAC-1",
+ "tSNE_1": -35.9974,
+ "tSNE_2": -9.853,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCCTCTATCGTCTGAA-1",
+ "tSNE_1": -21.9748,
+ "tSNE_2": -9.0617,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTCCTAGTGGTACAG-1",
+ "tSNE_1": -37.1531,
+ "tSNE_2": -4.7444,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTCTGTAGTACACCT-1",
+ "tSNE_1": -33.026,
+ "tSNE_2": -11.2598,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTCTGTTCGGCCGAT-1",
+ "tSNE_1": -22.4223,
+ "tSNE_2": -6.5928,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTGCGAAGGATGGTC-1",
+ "tSNE_1": -22.9352,
+ "tSNE_2": -8.2238,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTGCGACAGATCCAT-1",
+ "tSNE_1": -33.1905,
+ "tSNE_2": -8.6875,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTGGGTAGGGTGTTG-1",
+ "tSNE_1": -36.751,
+ "tSNE_2": -1.4409,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGACGTCAGAAGGTTT-1",
+ "tSNE_1": -32.3023,
+ "tSNE_2": -10.2337,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGCTCGAAGAGTTGGC-1",
+ "tSNE_1": -33.8487,
+ "tSNE_2": -6.8917,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGGCACTCATCGATTG-1",
+ "tSNE_1": -37.1559,
+ "tSNE_2": -2.9526,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGTGTTAAGCGTTCCG-1",
+ "tSNE_1": -31.4648,
+ "tSNE_2": -5.6838,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTAACGTAGGCGACAT-1",
+ "tSNE_1": -9.7039,
+ "tSNE_2": -13.1229,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTACGTAAGAGTGAGA-1",
+ "tSNE_1": -32.0874,
+ "tSNE_2": -14.2883,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTACGTAGTCACAAGG-1",
+ "tSNE_1": -32.5581,
+ "tSNE_2": -13.2876,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTATCTTAGGCATTGG-1",
+ "tSNE_1": -37.0003,
+ "tSNE_2": -0.9336,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTATTCTGTAGCGCAA-1",
+ "tSNE_1": -24.399,
+ "tSNE_2": -3.6021,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTCATTTAGGTACTCT-1",
+ "tSNE_1": -31.9873,
+ "tSNE_2": -13.7352,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTCGGGTAGAGACTTA-1",
+ "tSNE_1": -32.8118,
+ "tSNE_2": -12.9828,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTGAAGGAGATCCTGT-1",
+ "tSNE_1": -37.2754,
+ "tSNE_2": -5.8311,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTGGGTCTCCTCAATT-1",
+ "tSNE_1": -33.0703,
+ "tSNE_2": -12.5077,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TACCTTAAGCGTAATA-1",
+ "tSNE_1": -25.7247,
+ "tSNE_2": -8.2047,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TACTCGCTCCGCGCAA-1",
+ "tSNE_1": -33.2916,
+ "tSNE_2": -10.2611,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TACTTACTCCAAGCCG-1",
+ "tSNE_1": -30.9245,
+ "tSNE_2": -3.8113,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TAGACCAGTTCACCTC-1",
+ "tSNE_1": -37.686,
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+ },
+ {
+ "cell_id": "TAGAGCTGTCGCATAT-1",
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+ "tSNE_2": -5.1874,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TAGAGCTTCTCGTATT-1",
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+ "tSNE_2": -11.5743,
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+ },
+ {
+ "cell_id": "TAGCCGGTCATGTCCC-1",
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+ "tSNE_2": -7.0196,
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+ },
+ {
+ "cell_id": "TATCAGGAGCATGGCA-1",
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+ "tSNE_2": -5.6553,
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+ },
+ {
+ "cell_id": "TATCAGGTCACAGGCC-1",
+ "tSNE_1": -32.995,
+ "tSNE_2": -11.0316,
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+ },
+ {
+ "cell_id": "TCATTTGAGCCTATGT-1",
+ "tSNE_1": -12.9524,
+ "tSNE_2": -26.0685,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCTATTGTCCCACTTG-1",
+ "tSNE_1": -35.4244,
+ "tSNE_2": -9.9275,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGAGCATTCCTTGCCA-1",
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+ "tSNE_2": -1.2622,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCGGGTTCTTACCGC-1",
+ "tSNE_1": -37.8721,
+ "tSNE_2": -6.8299,
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+ },
+ {
+ "cell_id": "TGGTTAGCAATCTGCA-1",
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+ "tSNE_2": -1.9491,
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+ },
+ {
+ "cell_id": "TTAACTCGTGTTCTTT-1",
+ "tSNE_1": -36.9101,
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+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTAGGACAGATGTGGC-1",
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+ "tSNE_2": -8.8196,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTAGGCAGTCAAGCGA-1",
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+ "tSNE_2": -6.2701,
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+ },
+ {
+ "cell_id": "TTCGGTCAGTGGTAAT-1",
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+ "tSNE_2": -8.3161,
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+ },
+ {
+ "cell_id": "TTCGGTCCATGGATGG-1",
+ "tSNE_1": -24.5751,
+ "tSNE_2": -8.3157,
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+ },
+ {
+ "cell_id": "TTCTTAGGTCAACTGT-1",
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+ "tSNE_2": -7.2919,
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+ },
+ {
+ "cell_id": "TTGCGTCAGGTTACCT-1",
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+ "tSNE_2": -13.0073,
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+ },
+ {
+ "cell_id": "TTGGCAAGTTGGACCC-1",
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+ "tSNE_2": -14.4677,
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+ },
+ {
+ "cell_id": "AAAGTAGTCGAATGCT-2",
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+ "tSNE_2": -9.9044,
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+ },
+ {
+ "cell_id": "AACTCCCGTTCCGTCT-2",
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+ },
+ {
+ "cell_id": "AACTGGTAGCTTCGCG-2",
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+ },
+ {
+ "cell_id": "AAGTCTGTCTTCCTTC-2",
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+ "tSNE_2": -8.271,
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+ },
+ {
+ "cell_id": "AATCCAGTCAAACAAG-2",
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+ "tSNE_2": -4.8449,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACACCAAGTTACGCGC-2",
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+ "tSNE_2": -7.0231,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACATGGTCACATGGGA-2",
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+ "tSNE_2": -5.0763,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACGCAGCTCATTTGGG-2",
+ "tSNE_1": -29.5798,
+ "tSNE_2": -2.9812,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACGGAGAGTCGGGTCT-2",
+ "tSNE_1": -24.7494,
+ "tSNE_2": -4.9593,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTGAACGTACCGTAT-2",
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+ "tSNE_2": -11.9297,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCCGAAAGCCAGTTT-2",
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+ "tSNE_2": -0.6523,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCGAGTTCTGTCCGT-2",
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+ "tSNE_2": -9.6994,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCTACTTCGTTACGA-2",
+ "tSNE_1": -27.3797,
+ "tSNE_2": 0.6265,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCTGCCCACCAGTTA-2",
+ "tSNE_1": -23.6301,
+ "tSNE_2": -3.6729,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATTTCTGGTACTCTCC-2",
+ "tSNE_1": -21.1789,
+ "tSNE_2": -7.4784,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAAGGCCAGGTTACCT-2",
+ "tSNE_1": -23.5173,
+ "tSNE_2": -3.8477,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACACAACAAGACACG-2",
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+ "tSNE_2": -4.9941,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACTCCAGTCTCCCTA-2",
+ "tSNE_1": -22.0059,
+ "tSNE_2": -7.8818,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGCATAAGCCCAACC-2",
+ "tSNE_1": -22.5825,
+ "tSNE_2": -8.0915,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGCTGGAGTCTCCTC-2",
+ "tSNE_1": -35.1485,
+ "tSNE_2": -3.3788,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGGTGCGTGCGCTTG-2",
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+ "tSNE_2": -1.4933,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGTAACAGGACATTA-2",
+ "tSNE_1": -30.9852,
+ "tSNE_2": -5.6541,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCAGCGAGTGAGGCTA-2",
+ "tSNE_1": -9.7215,
+ "tSNE_2": -12.2155,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCATGTCCACATGGGA-2",
+ "tSNE_1": 2.4583,
+ "tSNE_2": -5.0589,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCGGTAGCATGGTAGG-2",
+ "tSNE_1": -26.4665,
+ "tSNE_2": -2.2992,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCGGTAGGTGACTCAT-2",
+ "tSNE_1": -21.1847,
+ "tSNE_2": -7.2045,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCGTGGATCTCATTCA-2",
+ "tSNE_1": -27.8223,
+ "tSNE_2": -10.9123,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCGTTCATCAGCTCTC-2",
+ "tSNE_1": -9.0529,
+ "tSNE_2": -12.7141,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTCTGAGTTACGTCA-2",
+ "tSNE_1": -29.2329,
+ "tSNE_2": -1.3277,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTCTGATCAGCTCGG-2",
+ "tSNE_1": -34.6777,
+ "tSNE_2": -5.7689,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGACTTCTCATTGCGA-2",
+ "tSNE_1": -30.8182,
+ "tSNE_2": -6.7097,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGAGCACGTACTTAGC-2",
+ "tSNE_1": -24.9337,
+ "tSNE_2": -1.8331,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGCGGTAAGCCACGTC-2",
+ "tSNE_1": -28.1273,
+ "tSNE_2": -0.2485,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGGACACCACGTGAGA-2",
+ "tSNE_1": -24.0875,
+ "tSNE_2": -3.4814,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGGACTGAGACCGGAT-2",
+ "tSNE_1": -31.067,
+ "tSNE_2": -5.3248,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGGCTAGTCGTTACAG-2",
+ "tSNE_1": -27.9651,
+ "tSNE_2": -1.8909,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGTCCATTCCAGAGGA-2",
+ "tSNE_1": -30.2174,
+ "tSNE_2": -3.5125,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGTTAGATCCACGTGG-2",
+ "tSNE_1": -28.5723,
+ "tSNE_2": -0.5253,
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+ },
+ {
+ "cell_id": "CTACGTCCAACTGCTA-2",
+ "tSNE_1": -10.2612,
+ "tSNE_2": -13.372,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTAGAGTAGTTTCCTT-2",
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+ "tSNE_2": -13.9393,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCGGAGGTCACTGGC-2",
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+ "tSNE_2": -12.2444,
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+ },
+ {
+ "cell_id": "CTCGGGACACCACGTG-2",
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+ "tSNE_2": -12.2,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCTACGCAAGTCATC-2",
+ "tSNE_1": -29.1972,
+ "tSNE_2": -0.8656,
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+ },
+ {
+ "cell_id": "CTGAAACCAGTAACGG-2",
+ "tSNE_1": -26.8156,
+ "tSNE_2": -1.5127,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTGCTGTAGCCACCTG-2",
+ "tSNE_1": -32.0216,
+ "tSNE_2": -4.141,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACGGCTAGGCGTACA-2",
+ "tSNE_1": -33.6628,
+ "tSNE_2": -5.3867,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACTAACTCCGTTGTC-2",
+ "tSNE_1": -21.901,
+ "tSNE_2": -7.3899,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCAGTTATCGTAGGTT-2",
+ "tSNE_1": -28.1226,
+ "tSNE_2": -1.2199,
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+ },
+ {
+ "cell_id": "GCTGCAGAGGGCTTCC-2",
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+ "tSNE_2": -1.2795,
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+ },
+ {
+ "cell_id": "GCTTCCACACCCTATC-2",
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+ "tSNE_2": -5.97,
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+ },
+ {
+ "cell_id": "GCTTGAAAGCCAGGAT-2",
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+ },
+ {
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+ "tSNE_2": -3.3886,
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+ },
+ {
+ "cell_id": "GGCGACTTCCGATATG-2",
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+ "tSNE_2": -0.3613,
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+ },
+ {
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+ "tSNE_2": -9.4621,
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+ },
+ {
+ "cell_id": "GTCATTTGTACCAGTT-2",
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+ "tSNE_2": -9.3391,
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+ },
+ {
+ "cell_id": "GTCGTAAAGTTATCGC-2",
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+ "tSNE_2": -7.9356,
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+ },
+ {
+ "cell_id": "GTCTTCGTCAGCCTAA-2",
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+ },
+ {
+ "cell_id": "GTGTTAGTCCACTGGG-2",
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+ "tSNE_2": -2.7109,
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+ },
+ {
+ "cell_id": "GTTAAGCGTCAAACTC-2",
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+ "tSNE_2": -9.0972,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTTCATTCAGTTTACG-2",
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+ "tSNE_2": -7.1791,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TACTCATGTTCCTCCA-2",
+ "tSNE_1": -21.3889,
+ "tSNE_2": -8.8386,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TATCAGGCAGAGCCAA-2",
+ "tSNE_1": -27.5784,
+ "tSNE_2": 0.8146,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TATCAGGCATATGCTG-2",
+ "tSNE_1": -24.4127,
+ "tSNE_2": -3.248,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TATCTCACACGTCTCT-2",
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+ "tSNE_2": -4.9976,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TATGCCCGTAGCACGA-2",
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+ "tSNE_2": -0.4815,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TATTACCTCTTCTGGC-2",
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+ "tSNE_2": -2.3698,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCTGAGACAGGTGCCT-2",
+ "tSNE_1": -26.1274,
+ "tSNE_2": -1.0617,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCTGAGATCAGCCTAA-2",
+ "tSNE_1": -21.5247,
+ "tSNE_2": -7.7707,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGACGGCTCATGTGGT-2",
+ "tSNE_1": -31.6571,
+ "tSNE_2": -10.425,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGAGAGGTCTCGGACG-2",
+ "tSNE_1": -31.9936,
+ "tSNE_2": -2.5411,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCGGGTTCAACGCTA-2",
+ "tSNE_1": -26.1145,
+ "tSNE_2": -0.8597,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGGCTGGTCATGTCCC-2",
+ "tSNE_1": -26.2871,
+ "tSNE_2": -1.419,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGTGGTACACATGGGA-2",
+ "tSNE_1": 2.386,
+ "tSNE_2": -5.0911,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTAGGCACACCAGATT-2",
+ "tSNE_1": -36.0637,
+ "tSNE_2": -9.5321,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTCTCCTTCATGTGGT-2",
+ "tSNE_1": -23.5703,
+ "tSNE_2": -8.4871,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTGAACGTCTGAGGGA-2",
+ "tSNE_1": -32.6614,
+ "tSNE_2": -14.5196,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTTATGCCAGCTGCAC-2",
+ "tSNE_1": -31.2812,
+ "tSNE_2": -9.136,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AAGACCTGTAAGTGGC-3",
+ "tSNE_1": 5.7622,
+ "tSNE_2": -4.9607,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACACCAACAGGCGATA-3",
+ "tSNE_1": -26.1702,
+ "tSNE_2": -6.346,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACCCACTAGCTCTCGG-3",
+ "tSNE_1": -36.9586,
+ "tSNE_2": -4.2642,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTGAGTGTAGAAAGG-3",
+ "tSNE_1": -29.9759,
+ "tSNE_2": -9.4707,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTTGTTAGTACGATA-3",
+ "tSNE_1": -31.9971,
+ "tSNE_2": -13.8309,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGATTGCGTAACGACG-3",
+ "tSNE_1": -34.2494,
+ "tSNE_2": -3.9416,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGGCCACAGAGTACAT-3",
+ "tSNE_1": -10.2639,
+ "tSNE_2": -13.6733,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGGGATGTCCTCATTA-3",
+ "tSNE_1": -28.7406,
+ "tSNE_2": -0.4143,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATAGACCAGCCAGAAC-3",
+ "tSNE_1": -34.7756,
+ "tSNE_2": -10.1206,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCCACCTCACGCATA-3",
+ "tSNE_1": -35.1867,
+ "tSNE_2": -8.705,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCCGAACAAACTGTC-3",
+ "tSNE_1": -34.1596,
+ "tSNE_2": -10.9703,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATCGAGTTCAACGGCC-3",
+ "tSNE_1": -13.2921,
+ "tSNE_2": -26.5908,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATTATCCAGCATCATC-3",
+ "tSNE_1": -35.6031,
+ "tSNE_2": -4.2505,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAACCAACAGGCGATA-3",
+ "tSNE_1": -27.2335,
+ "tSNE_2": -0.2105,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAACTAGCATCATCCC-3",
+ "tSNE_1": -35.9651,
+ "tSNE_2": -5.2375,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAAGTTGCAGTAAGCG-3",
+ "tSNE_1": -25.2544,
+ "tSNE_2": -5.8512,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACCAGGAGTAATCCC-3",
+ "tSNE_1": -32.0508,
+ "tSNE_2": -8.2093,
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+ },
+ {
+ "cell_id": "CATATGGGTCGAACAG-3",
+ "tSNE_1": -35.4898,
+ "tSNE_2": -7.1605,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATCGGGCATCCTAGA-3",
+ "tSNE_1": -30.1458,
+ "tSNE_2": -12.0298,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATTATCCACGTGAGA-3",
+ "tSNE_1": -30.7543,
+ "tSNE_2": -3.9555,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCAATCCGTTGGAGGT-3",
+ "tSNE_1": -33.5603,
+ "tSNE_2": -4.9861,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCACCTATCGAGAGCA-3",
+ "tSNE_1": -28.7486,
+ "tSNE_2": -12.6719,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTACCAGTACCGTAT-3",
+ "tSNE_1": -23.4257,
+ "tSNE_2": -7.8037,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTTTCTCATTACCTT-3",
+ "tSNE_1": -37.5107,
+ "tSNE_2": -6.7731,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGTGAGCCACAAGCCC-3",
+ "tSNE_1": -32.2438,
+ "tSNE_2": -9.3193,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTAAGACTCCGCATAA-3",
+ "tSNE_1": -34.1257,
+ "tSNE_2": -8.2422,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCGTACAGACGCAAC-3",
+ "tSNE_1": -27.5157,
+ "tSNE_2": -10.7119,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTCTACGCAAACGTGG-3",
+ "tSNE_1": -31.4825,
+ "tSNE_2": -12.5143,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTGATAGAGTGGAGTC-3",
+ "tSNE_1": -30.238,
+ "tSNE_2": -13.3355,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAAATGACATTCTTAC-3",
+ "tSNE_1": -22.6995,
+ "tSNE_2": -7.5944,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAAATGATCCCATTAT-3",
+ "tSNE_1": -24.6651,
+ "tSNE_2": -7.047,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GACAGAGAGGCTCTTA-3",
+ "tSNE_1": -35.9547,
+ "tSNE_2": -3.9177,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCAAACTCACCTCGGA-3",
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+ "tSNE_2": -5.8486,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGAATAAAGGGCACTA-3",
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+ "tSNE_2": -2.5321,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -7.4986,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -5.4163,
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+ },
+ {
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+ "tSNE_2": -4.298,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTCGTAATCGAACTGT-3",
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+ "tSNE_2": -14.6537,
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+ },
+ {
+ "cell_id": "GTGAAGGGTCGCGTGT-3",
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+ "tSNE_2": -5.8137,
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -9.0089,
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+ },
+ {
+ "cell_id": "TACCTTAAGCTGAACG-3",
+ "tSNE_1": -33.3216,
+ "tSNE_2": -7.6537,
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+ },
+ {
+ "cell_id": "TACTCATCAATGAAAC-3",
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+ },
+ {
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+ "tSNE_2": -5.8243,
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+ },
+ {
+ "cell_id": "TATCAGGTCCTTCAAT-3",
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+ "tSNE_2": -3.8357,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -8.6279,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
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+ "tSNE_2": -4.4573,
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+ },
+ {
+ "cell_id": "TCTATTGGTAGCTTGT-3",
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+ "tSNE_2": -2.9358,
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+ },
+ {
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+ "tSNE_2": -5.2619,
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+ },
+ {
+ "cell_id": "TGGCGCACACAAGTAA-3",
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+ "tSNE_2": -3.5703,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGGTTCCTCGTGTAGT-3",
+ "tSNE_1": -27.0562,
+ "tSNE_2": -1.7207,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTAGGCATCTGGCGTG-3",
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+ "tSNE_2": -3.0214,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTGCCGTTCGCAAGCC-3",
+ "tSNE_1": -33.4762,
+ "tSNE_2": -5.5996,
+ "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ }
+ ],
+ "3": [
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+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAAGATGGTTGCGCAC-1",
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+ "tSNE_2": -23.4663,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAAGTAGAGTGCCAGA-1",
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+ "tSNE_2": -18.5414,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AACGTTGAGTTACCCA-1",
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+ "tSNE_2": -20.6766,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -20.0802,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAGGAGCGTTAGAACA-1",
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+ "tSNE_2": -15.1055,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -23.8316,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAGGTTCAGGAGTCTG-1",
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+ "tSNE_2": -16.4616,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAGTCTGAGATAGGAG-1",
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+ "tSNE_2": -24.895,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AATCGGTTCTTGTTTG-1",
+ "tSNE_1": 9.7064,
+ "tSNE_2": -22.1629,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ACCTTTAGTTACGTCA-1",
+ "tSNE_1": 14.0979,
+ "tSNE_2": -14.1631,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ACGAGCCAGGGCTTGA-1",
+ "tSNE_1": 18.9689,
+ "tSNE_2": -20.1554,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ACGAGCCTCAGCGATT-1",
+ "tSNE_1": 13.0683,
+ "tSNE_2": -18.1144,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGCTTGAGTCCAGTTA-1",
+ "tSNE_1": 19.3685,
+ "tSNE_2": -22.0634,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGGGTGATCTCTTGAT-1",
+ "tSNE_1": 0.0464,
+ "tSNE_2": -26.9133,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGTAGTCAGAGGACGG-1",
+ "tSNE_1": 16.2808,
+ "tSNE_2": -23.5476,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATCATGGTCAACACTG-1",
+ "tSNE_1": 17.8704,
+ "tSNE_2": -15.8283,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -15.7096,
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+ },
+ {
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+ "tSNE_2": -20.3476,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCTCTAAGTCTAGCCG-1",
+ "tSNE_1": 6.774,
+ "tSNE_2": -25.8244,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGAGCCGTCGGTCTAA-1",
+ "tSNE_1": 17.2321,
+ "tSNE_2": -22.2573,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGCACCTTCTATCGCC-1",
+ "tSNE_1": 15.6055,
+ "tSNE_2": -23.9486,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGTGTTTAGTGGGCTA-1",
+ "tSNE_1": 12.4339,
+ "tSNE_2": -27.6903,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTCTACAGTGCAGACA-1",
+ "tSNE_1": 21.8402,
+ "tSNE_2": -15.8481,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTGAACGGTAGTGAAT-1",
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+ },
+ {
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+ "tSNE_2": -18.271,
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -16.1365,
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+ },
+ {
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+ },
+ {
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+ "tSNE_1": 13.2096,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
+ "cell_id": "CTCCTAGTCTCTAAGG-2",
+ "tSNE_1": 8.989,
+ "tSNE_2": -13.0727,
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+ },
+ {
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+ "tSNE_2": -15.2295,
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+ },
+ {
+ "cell_id": "CTTACCGCAGGTGCCT-2",
+ "tSNE_1": 9.1468,
+ "tSNE_2": -20.6814,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GAACATCGTCGACTGC-2",
+ "tSNE_1": 7.3857,
+ "tSNE_2": -17.0446,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GAACGGATCGTTACAG-2",
+ "tSNE_1": 6.7093,
+ "tSNE_2": -12.7126,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GAATAAGTCCGTAGTA-2",
+ "tSNE_1": 8.0462,
+ "tSNE_2": -16.2876,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GAATGAAAGCTGCGAA-2",
+ "tSNE_1": 13.0361,
+ "tSNE_2": -13.312,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GACACGCGTTGCGTTA-2",
+ "tSNE_1": 19.9382,
+ "tSNE_2": -16.009,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GACACGCTCCAAGTAC-2",
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -24.6825,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTAGTGAGTATCTGCA-3",
+ "tSNE_1": 16.968,
+ "tSNE_2": -21.7376,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTGATAGTCGCGTTTC-3",
+ "tSNE_1": 7.4236,
+ "tSNE_2": -15.9451,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTGTGCTAGCTTCGCG-3",
+ "tSNE_1": 20.1135,
+ "tSNE_2": -17.6378,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GACGTGCCAGACGTAG-3",
+ "tSNE_1": 17.531,
+ "tSNE_2": -19.0141,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GCAATCAGTGTGGCTC-3",
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+ "tSNE_2": -17.4112,
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+ },
+ {
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+ "tSNE_1": 0.0023,
+ "tSNE_2": -26.6486,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_1": 19.0044,
+ "tSNE_2": -18.6499,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -21.3476,
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+ },
+ {
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+ "tSNE_1": 14.5546,
+ "tSNE_2": -21.0418,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGACGTCGTCAATGTC-3",
+ "tSNE_1": 8.516,
+ "tSNE_2": -16.8361,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -16.1255,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGCGACTAGGCCGAAT-3",
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+ "tSNE_2": -15.6892,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -12.2973,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_2": -14.9416,
+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
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+ "tSNE_1": 18.5019,
+ "tSNE_2": -14.9777,
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+ },
+ {
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+ "tSNE_2": -19.5719,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -25.3776,
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+ },
+ {
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+ "tSNE_2": -25.6205,
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+ },
+ {
+ "cell_id": "TGCGGGTGTGTGAAAT-3",
+ "tSNE_1": 7.7935,
+ "tSNE_2": -17.7895,
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+ },
+ {
+ "cell_id": "TGCTACCAGGGCACTA-3",
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+ "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTTGTCACATCGGAAG-3",
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+ "tSNE_2": -17.7539,
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+ }
+ ],
+ "4": [
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+ "cell_id": "AACTCTTTCAGTCAGT-1",
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": 14.6486,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "ACTGAACGTGACGCCT-2",
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+ "tSNE_2": 24.3035,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 13.74,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 26.3464,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 25.3782,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 27.2952,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 21.6011,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 27.3945,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 26.8433,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGCGTCGTCCTCATTA-2",
+ "tSNE_1": 20.6855,
+ "tSNE_2": 22.206,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGCTCCTTCTTCTGGC-2",
+ "tSNE_1": 14.6927,
+ "tSNE_2": 19.9452,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGGCCACGTTACGTCA-2",
+ "tSNE_1": 20.4203,
+ "tSNE_2": 26.0256,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGGGATGGTAAGTAGT-2",
+ "tSNE_1": 11.9215,
+ "tSNE_2": 25.2931,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGGTCATTCTACCTGC-2",
+ "tSNE_1": 13.4049,
+ "tSNE_2": 24.5155,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "AGTAGTCCACTCGACG-2",
+ "tSNE_1": 2.5384,
+ "tSNE_2": 24.2467,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 23.2106,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 24.8627,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 24.3673,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "CTACGTCGTCGGCATC-2",
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+ "tSNE_2": 24.7775,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 20.2246,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ },
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+ },
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+ },
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+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ },
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+ },
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+ },
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+ "tSNE_2": 28.9535,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 18.1592,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 29.2603,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 19.5406,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
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+ "tSNE_2": 20.8457,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "TACCTATTCGCTTAGA-2",
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+ "tSNE_2": 21.8179,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "TACTCATAGGGCATGT-2",
+ "tSNE_1": 25.7256,
+ "tSNE_2": 20.2247,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "TACTTGTTCCCATTTA-2",
+ "tSNE_1": 24.3558,
+ "tSNE_2": 10.1003,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
+ {
+ "cell_id": "TAGTGGTAGCGATGAC-2",
+ "tSNE_1": 14.3292,
+ "tSNE_2": 26.2871,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "tSNE_2": 24.7608,
+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ },
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+ "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]
+ }
+ ],
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
+ "cell_id": "CAAGATCAGTCCCACG-1",
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+ },
+ {
+ "cell_id": "CACCAGGAGAGACTAT-1",
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+ },
+ {
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+ },
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+ },
+ {
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+ },
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+ },
+ {
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+ },
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+ },
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+ },
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+ },
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+ },
+ {
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+ },
+ {
+ "cell_id": "CGTGAGCTCCTAGTGA-1",
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+ },
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+ },
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ "tSNE_2": -24.1305,
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
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+ },
+ {
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+ },
+ {
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+ },
+ {
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+ },
+ {
+ "cell_id": "GGGCACTCACAGAGGT-1",
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+ "tSNE_2": -26.8676,
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+ },
+ {
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+ },
+ {
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+ "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]
+ },
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+ },
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+ "tSNE_2": -26.741,
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+ },
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+ },
+ {
+ "cell_id": "GTACTTTAGCATCATC-1",
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+ },
+ {
+ "cell_id": "GTAGTCAAGGTTCCTA-1",
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+ "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]
+ },
+ {
+ "cell_id": "GTCGGGTTCCGCGGTA-1",
+ "tSNE_1": -12.5804,
+ "tSNE_2": -26.9339,
+ "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]
+ },
+ {
+ "cell_id": "GTCGTAAAGTGAACGC-1",
+ "tSNE_1": -11.1526,
+ "tSNE_2": -26.7342,
+ "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]
+ },
+ {
+ "cell_id": "GTGTTAGCAAACCTAC-1",
+ "tSNE_1": -4.867,
+ "tSNE_2": -27.869,
+ "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]
+ },
+ {
+ "cell_id": "GTTAAGCAGGCTAGCA-1",
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+ },
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+ },
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+ ],
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ },
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+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "TTGGAACCACGCCAGT-2",
+ "tSNE_1": 20.0314,
+ "tSNE_2": 16.1474,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "AACCATGCAAGACACG-3",
+ "tSNE_1": 21.2539,
+ "tSNE_2": 8.1064,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "ACATGGTCAGGGTATG-3",
+ "tSNE_1": 24.8062,
+ "tSNE_2": 11.5325,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "ACTGAACGTCAGAGGT-3",
+ "tSNE_1": 19.6025,
+ "tSNE_2": 5.4979,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "ATTTCTGTCCGTACAA-3",
+ "tSNE_1": 15.652,
+ "tSNE_2": 10.6563,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "CCACCTACATGACGGA-3",
+ "tSNE_1": 15.7462,
+ "tSNE_2": 19.515,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "GTACTCCCAGCATACT-3",
+ "tSNE_1": 10.7344,
+ "tSNE_2": 3.2434,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "GTCACAATCCTGTACC-3",
+ "tSNE_1": 19.2926,
+ "tSNE_2": 4.9904,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "GTTACAGCAACTGCGC-3",
+ "tSNE_1": 18.2542,
+ "tSNE_2": 10.8364,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "TCTGGAAAGCTGTCTA-3",
+ "tSNE_1": 27.1694,
+ "tSNE_2": 20.4534,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ },
+ {
+ "cell_id": "TTGGAACCACAGATTC-3",
+ "tSNE_1": 18.4988,
+ "tSNE_2": 11.0718,
+ "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]
+ }
+ ],
+ "7": [
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+ "cell_id": "AAAGTAGTCTTGCATT-1",
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+ "tSNE_2": -29.0072,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AACTCCCGTTGCGCAC-1",
+ "tSNE_1": 4.0337,
+ "tSNE_2": -31.9209,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AACTTTCTCTTCCTTC-1",
+ "tSNE_1": 4.7107,
+ "tSNE_2": -31.1447,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AAGGCAGGTAACGACG-1",
+ "tSNE_1": 8.0074,
+ "tSNE_2": -30.1725,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ACAGCTAAGCTAGCCC-1",
+ "tSNE_1": 4.8227,
+ "tSNE_2": -30.16,
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+ },
+ {
+ "cell_id": "ACATCAGTCGCCTGTT-1",
+ "tSNE_1": 4.2523,
+ "tSNE_2": -28.5965,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ACATGGTGTTCAGTAC-1",
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+ "tSNE_2": -28.6965,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGCTCTCAGTTACGGG-1",
+ "tSNE_1": 7.0857,
+ "tSNE_2": -30.9754,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGGCCGTTCACTCTTA-1",
+ "tSNE_1": 8.7754,
+ "tSNE_2": -30.2361,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGTGAGGTCTTCTGGC-1",
+ "tSNE_1": 0.7376,
+ "tSNE_2": -29.8322,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGTGGGACATGCGCAC-1",
+ "tSNE_1": 5.5842,
+ "tSNE_2": -31.5476,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "AGTTGGTGTCCCGACA-1",
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+ "tSNE_2": -28.9029,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATCTGCCTCGCGTTTC-1",
+ "tSNE_1": 6.3753,
+ "tSNE_2": -32.3736,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATTATCCTCAAACAAG-1",
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+ "tSNE_2": -28.8426,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATTCTACCAATAGCGG-1",
+ "tSNE_1": 6.1623,
+ "tSNE_2": -30.4417,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATTGGACAGCGTAGTG-1",
+ "tSNE_1": 2.438,
+ "tSNE_2": -31.2422,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CAACCTCCATGCATGT-1",
+ "tSNE_1": 12.7313,
+ "tSNE_2": -27.4773,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CACTCCATCACATAGC-1",
+ "tSNE_1": 8.7953,
+ "tSNE_2": -29.9777,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CAGAGAGCATTAGCCA-1",
+ "tSNE_1": 2.6408,
+ "tSNE_2": -31.2964,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CAGCTGGTCAGATAAG-1",
+ "tSNE_1": 8.2823,
+ "tSNE_2": -29.5833,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CAGTAACAGTATTGGA-1",
+ "tSNE_1": 7.0319,
+ "tSNE_2": -29.8527,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CATGACACAGGGTACA-1",
+ "tSNE_1": 8.7534,
+ "tSNE_2": -27.9362,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CATGCCTGTGTATGGG-1",
+ "tSNE_1": 5.3787,
+ "tSNE_2": -30.636,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CATGCCTTCGTCTGCT-1",
+ "tSNE_1": 4.8378,
+ "tSNE_2": -30.8011,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CCATTCGTCAGTGCAT-1",
+ "tSNE_1": 9.4576,
+ "tSNE_2": -28.9855,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CCCTCCTTCACGGTTA-1",
+ "tSNE_1": 9.2878,
+ "tSNE_2": -31.5719,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CCGTACTTCTCGGACG-1",
+ "tSNE_1": 11.9383,
+ "tSNE_2": -28.369,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGAATGTCATTGCGGC-1",
+ "tSNE_1": 9.1281,
+ "tSNE_2": -25.6691,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGATCGGAGAACAACT-1",
+ "tSNE_1": 10.9572,
+ "tSNE_2": -28.1718,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGATCGGAGCGACGTA-1",
+ "tSNE_1": 6.7034,
+ "tSNE_2": -30.9919,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGCGGTAGTCTCTCGT-1",
+ "tSNE_1": 7.9642,
+ "tSNE_2": -30.3875,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGGGTCACATTGAGCT-1",
+ "tSNE_1": 7.0288,
+ "tSNE_2": -26.7629,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGTGTCTAGGTGCTTT-1",
+ "tSNE_1": 9.3389,
+ "tSNE_2": -29.5406,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGTTGGGTCCTCTAGC-1",
+ "tSNE_1": 2.3676,
+ "tSNE_2": -30.9277,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTTCTCTAGCTGATAA-1",
+ "tSNE_1": 9.8487,
+ "tSNE_2": -29.6733,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTTGGCTCATCTGGTA-1",
+ "tSNE_1": 6.1363,
+ "tSNE_2": -32.1517,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CTTTGCGTCGGCCGAT-1",
+ "tSNE_1": 7.4517,
+ "tSNE_2": -28.6693,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GAGGTGACAACGATCT-1",
+ "tSNE_1": 6.8852,
+ "tSNE_2": -31.4055,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GATCGCGCAACGATGG-1",
+ "tSNE_1": 1.2694,
+ "tSNE_2": -30.7598,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GCTGCGAAGCTACCTA-1",
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+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GCTGCGATCTAACCGA-1",
+ "tSNE_1": 7.0573,
+ "tSNE_2": -30.0739,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGAAAGCGTTGGAGGT-1",
+ "tSNE_1": 7.573,
+ "tSNE_2": -27.8116,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGACAGAGTGCTTCTC-1",
+ "tSNE_1": 9.4427,
+ "tSNE_2": -29.0256,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGACATTGTAAGCACG-1",
+ "tSNE_1": 4.6259,
+ "tSNE_2": -31.4636,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGATTACCAAGCTGGA-1",
+ "tSNE_1": 6.6008,
+ "tSNE_2": -32.44,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGGAATGGTCGAAAGC-1",
+ "tSNE_1": 7.2858,
+ "tSNE_2": -31.6233,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTACTCCAGATGGCGT-1",
+ "tSNE_1": 5.5262,
+ "tSNE_2": -30.5901,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTACTTTCACGGTGTC-1",
+ "tSNE_1": 5.2134,
+ "tSNE_2": -31.7668,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTCACGGTCTGGCGTG-1",
+ "tSNE_1": 2.9166,
+ "tSNE_2": -31.3411,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTGAAGGTCGTATCAG-1",
+ "tSNE_1": 4.4601,
+ "tSNE_2": -27.894,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTGCATATCGCAAACT-1",
+ "tSNE_1": 7.02,
+ "tSNE_2": -26.804,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTGCTTCTCAGTGCAT-1",
+ "tSNE_1": 4.0162,
+ "tSNE_2": -31.5559,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TAAGTGCGTTAGATGA-1",
+ "tSNE_1": 10.625,
+ "tSNE_2": -28.9106,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TACGGTAGTCGAGTTT-1",
+ "tSNE_1": 3.0297,
+ "tSNE_2": -31.4806,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TATTACCCATTCGACA-1",
+ "tSNE_1": 9.3816,
+ "tSNE_2": -28.9858,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TATTACCTCCGTACAA-1",
+ "tSNE_1": 6.5307,
+ "tSNE_2": -30.3331,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCAGCTCTCGGCGGTT-1",
+ "tSNE_1": 10.9211,
+ "tSNE_2": -28.1732,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCAGGTAGTAGCAAAT-1",
+ "tSNE_1": 7.1713,
+ "tSNE_2": -26.8363,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCATTACCACCGTTGG-1",
+ "tSNE_1": 7.4523,
+ "tSNE_2": -30.2116,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCCACACCACGGTAAG-1",
+ "tSNE_1": 4.7333,
+ "tSNE_2": -32.3749,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCGTACCGTGTGCGTC-1",
+ "tSNE_1": 7.1994,
+ "tSNE_2": -26.8724,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TCTATTGGTTCCGGCA-1",
+ "tSNE_1": 6.5313,
+ "tSNE_2": -31.0326,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGAAAGACATCCAACA-1",
+ "tSNE_1": 4.1268,
+ "tSNE_2": -31.9601,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGACGGCAGCTGCAAG-1",
+ "tSNE_1": 5.282,
+ "tSNE_2": -31.2439,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGATTTCAGCCGTCGT-1",
+ "tSNE_1": 11.1645,
+ "tSNE_2": -29.2634,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGGCGCATCCATTCTA-1",
+ "tSNE_1": 6.4808,
+ "tSNE_2": -29.9533,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGTATTCAGAGTACAT-1",
+ "tSNE_1": 4.7208,
+ "tSNE_2": -31.7277,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGTGGTACACATCTTT-1",
+ "tSNE_1": 5.9729,
+ "tSNE_2": -32.6012,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TGTGTTTTCCCGACTT-1",
+ "tSNE_1": 0.7457,
+ "tSNE_2": -29.7259,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTAACTCCAGTCACTA-1",
+ "tSNE_1": 8.2235,
+ "tSNE_2": -29.8016,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTAACTCTCCCTCAGT-1",
+ "tSNE_1": 8.5762,
+ "tSNE_2": -30.23,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTCGAAGGTATGAATG-1",
+ "tSNE_1": 7.5646,
+ "tSNE_2": -30.3898,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTCTACACATAGGATA-1",
+ "tSNE_1": 5.7497,
+ "tSNE_2": -30.4258,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTGGCAATCATGTGGT-1",
+ "tSNE_1": 9.299,
+ "tSNE_2": -26.2528,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TTTCCTCCAACGATCT-1",
+ "tSNE_1": 5.6358,
+ "tSNE_2": -31.0909,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "ATAACGCAGCTCAACT-2",
+ "tSNE_1": 7.3429,
+ "tSNE_2": -27.0267,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CCTCAGTGTACAGTGG-2",
+ "tSNE_1": 10.7013,
+ "tSNE_2": -24.9916,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CGTCACTGTTCCACTC-2",
+ "tSNE_1": 6.5258,
+ "tSNE_2": -25.7499,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GATCTAGGTTGACGTT-2",
+ "tSNE_1": 9.3738,
+ "tSNE_2": -24.7666,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "TATCAGGTCATATCGG-2",
+ "tSNE_1": 8.7131,
+ "tSNE_2": -24.4512,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "CCTTTCTTCGAACTGT-3",
+ "tSNE_1": 4.183,
+ "tSNE_2": -28.0515,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GGCTGGTCATCAGTCA-3",
+ "tSNE_1": 0.7094,
+ "tSNE_2": -29.6695,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ },
+ {
+ "cell_id": "GTATCTTGTAGCGTAG-3",
+ "tSNE_1": 9.7716,
+ "tSNE_2": -24.6436,
+ "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]
+ }
+ ],
+ "8": [
+ {
+ "cell_id": "ATCCACCTCGTTTATC-1",
+ "tSNE_1": -12.2683,
+ "tSNE_2": 11.8658,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "ATTTCTGCATTTGCCC-1",
+ "tSNE_1": -15.1272,
+ "tSNE_2": 16.7164,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "CACAAACCATTTGCTT-1",
+ "tSNE_1": -18.1356,
+ "tSNE_2": 20.0309,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "CATCGGGTCATGCAAC-1",
+ "tSNE_1": -19.94,
+ "tSNE_2": 17.3975,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "CGCTGGAAGACGCACA-1",
+ "tSNE_1": -14.3459,
+ "tSNE_2": 16.8989,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "GCTGCTTTCGAGCCCA-1",
+ "tSNE_1": -11.4173,
+ "tSNE_2": 12.646,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "GGAAAGCGTCGAGTTT-1",
+ "tSNE_1": -7.9929,
+ "tSNE_2": 2.3198,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "GGACAAGCATTGGGCC-1",
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+ "tSNE_2": 20.4258,
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+ "tSNE_1": -17.8542,
+ "tSNE_2": 16.4886,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ },
+ {
+ "cell_id": "TGGACGCCATTGGTAC-3",
+ "tSNE_1": -19.8559,
+ "tSNE_2": 18.3913,
+ "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]
+ }
+ ],
+ "9": [
+ {
+ "cell_id": "AAAGATGGTCCCTACT-1",
+ "tSNE_1": -14.7434,
+ "tSNE_2": -15.1667,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "AAAGCAATCGCTGATA-1",
+ "tSNE_1": -13.7204,
+ "tSNE_2": -15.7943,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACACCCTAGCACACAG-1",
+ "tSNE_1": -14.0225,
+ "tSNE_2": -14.8257,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACAGCCGAGCTAGTTC-1",
+ "tSNE_1": -12.9786,
+ "tSNE_2": -12.9082,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACGATACAGACCCACC-1",
+ "tSNE_1": -10.5313,
+ "tSNE_2": -11.5414,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACGATACGTATAGGTA-1",
+ "tSNE_1": -8.4574,
+ "tSNE_2": -22.2331,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "AGTCTTTCACTGTGTA-1",
+ "tSNE_1": -9.3898,
+ "tSNE_2": -20.2075,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "AGTTGGTTCCTTTACA-1",
+ "tSNE_1": -7.8823,
+ "tSNE_2": -24.4585,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ATGCGATCATCAGTAC-1",
+ "tSNE_1": -10.2572,
+ "tSNE_2": -16.0011,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ATGCGATGTTCACCTC-1",
+ "tSNE_1": -10.7848,
+ "tSNE_2": -19.3309,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CACAGGCGTAAACACA-1",
+ "tSNE_1": -10.0235,
+ "tSNE_2": -19.52,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CAGCAGCGTCTAAAGA-1",
+ "tSNE_1": -9.0786,
+ "tSNE_2": -20.7126,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CATCAAGTCGGTCCGA-1",
+ "tSNE_1": -9.9946,
+ "tSNE_2": -19.4238,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CCCAATCTCACAGTAC-1",
+ "tSNE_1": -8.0433,
+ "tSNE_2": -23.3087,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CCTACACCACATGACT-1",
+ "tSNE_1": -8.7378,
+ "tSNE_2": -21.4317,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CGAGCCAAGCTGAACG-1",
+ "tSNE_1": -10.7646,
+ "tSNE_2": -12.0532,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CGTAGCGGTAGCGATG-1",
+ "tSNE_1": -9.053,
+ "tSNE_2": -20.7278,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CTCCTAGAGCGGCTTC-1",
+ "tSNE_1": -9.1444,
+ "tSNE_2": -20.5184,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CTGAAGTAGGCCCTCA-1",
+ "tSNE_1": -10.2979,
+ "tSNE_2": -19.3205,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GACACGCCATTTGCCC-1",
+ "tSNE_1": -6.6803,
+ "tSNE_2": -26.1909,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GACGGCTTCCGAAGAG-1",
+ "tSNE_1": -9.6137,
+ "tSNE_2": -19.5674,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GACTGCGGTCGCTTTC-1",
+ "tSNE_1": -10.9878,
+ "tSNE_2": -17.6819,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GCACATAGTGAAGGCT-1",
+ "tSNE_1": -7.2664,
+ "tSNE_2": -14.5466,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GGTATTGTCTCAACTT-1",
+ "tSNE_1": -13.8889,
+ "tSNE_2": -14.5996,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTCAAGTCACTTCTGC-1",
+ "tSNE_1": -10.0203,
+ "tSNE_2": -19.4946,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTCCTCATCACTGGGC-1",
+ "tSNE_1": -10.356,
+ "tSNE_2": -19.5177,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTTCGGGAGTACCGGA-1",
+ "tSNE_1": -10.2058,
+ "tSNE_2": -17.1317,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TCAATCTTCATATCGG-1",
+ "tSNE_1": -10.0322,
+ "tSNE_2": -19.4133,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TCTGGAACACCTCGTT-1",
+ "tSNE_1": -10.5001,
+ "tSNE_2": -16.5695,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TCTGGAATCATGCATG-1",
+ "tSNE_1": -9.877,
+ "tSNE_2": -19.6889,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGAGCCGCAGGACGTA-1",
+ "tSNE_1": -9.2568,
+ "tSNE_2": -20.3739,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGCCCTATCTGGTGTA-1",
+ "tSNE_1": -11.1839,
+ "tSNE_2": -17.3003,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGCGTGGTCGCCATAA-1",
+ "tSNE_1": -13.7698,
+ "tSNE_2": -16.119,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGTTCCGAGGCGACAT-1",
+ "tSNE_1": -10.0381,
+ "tSNE_2": -18.7581,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TTGACTTGTTTGACTG-1",
+ "tSNE_1": -8.7041,
+ "tSNE_2": -21.5865,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACCAGTACAAGCGCTC-2",
+ "tSNE_1": -10.7892,
+ "tSNE_2": -17.1268,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "AGCTCCTTCGCGTAGC-2",
+ "tSNE_1": -14.0675,
+ "tSNE_2": -15.1391,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CACACTCGTCCAGTGC-2",
+ "tSNE_1": -13.9843,
+ "tSNE_2": -15.6091,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CACATTTTCAACACTG-2",
+ "tSNE_1": -13.7582,
+ "tSNE_2": -15.7354,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CAGGTGCCACGGTAAG-2",
+ "tSNE_1": -10.5827,
+ "tSNE_2": -11.0498,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CATCCACTCGTCGTTC-2",
+ "tSNE_1": -14.1118,
+ "tSNE_2": -15.1719,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CATGGCGGTCCCTTGT-2",
+ "tSNE_1": -13.5694,
+ "tSNE_2": -14.6756,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CGATGGCGTTGAGGTG-2",
+ "tSNE_1": -8.984,
+ "tSNE_2": -10.2863,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CGTAGGCTCGGAGGTA-2",
+ "tSNE_1": -11.8082,
+ "tSNE_2": -10.6872,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CTTAGGAGTCTCCCTA-2",
+ "tSNE_1": -12.2124,
+ "tSNE_2": -11.176,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GAAGCAGGTTAAAGAC-2",
+ "tSNE_1": -11.5137,
+ "tSNE_2": -11.5081,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GCCTCTAAGGACATTA-2",
+ "tSNE_1": -11.3637,
+ "tSNE_2": -12.2501,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GCTGCAGCATATGAGA-2",
+ "tSNE_1": -11.4805,
+ "tSNE_2": -11.063,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTCTTCGTCAAACCAC-2",
+ "tSNE_1": -12.1803,
+ "tSNE_2": -11.4165,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTTTCTACAGCTGGCT-2",
+ "tSNE_1": -10.8369,
+ "tSNE_2": -17.8228,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGCACCTTCGTGGGAA-2",
+ "tSNE_1": -11.0761,
+ "tSNE_2": -10.9703,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TGGTTAGAGGCCCTTG-2",
+ "tSNE_1": -13.9356,
+ "tSNE_2": -14.736,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TTAACTCCACGACGAA-2",
+ "tSNE_1": -12.638,
+ "tSNE_2": -16.5172,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TTTGGTTTCATCACCC-2",
+ "tSNE_1": -10.3738,
+ "tSNE_2": -18.7726,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "ACGTCAAAGTATTGGA-3",
+ "tSNE_1": -10.5138,
+ "tSNE_2": -10.7892,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "CCTTACGTCTGCGACG-3",
+ "tSNE_1": -9.8945,
+ "tSNE_2": -16.5837,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "GTCGTAACAATGAATG-3",
+ "tSNE_1": -10.1609,
+ "tSNE_2": -16.1613,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ },
+ {
+ "cell_id": "TATCAGGCACGGTGTC-3",
+ "tSNE_1": -13.9512,
+ "tSNE_2": -15.5986,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]
+ }
+ ],
+ "10": [
+ {
+ "cell_id": "GCAGTTATCTCGAGTA-1",
+ "tSNE_1": -23.2011,
+ "tSNE_2": 18.1567,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACGCAGCCAAGACACG-2",
+ "tSNE_1": -19.8771,
+ "tSNE_2": 16.1992,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGAGAGCACTTACGA-2",
+ "tSNE_1": -17.4395,
+ "tSNE_2": 15.8052,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGAAGAGGACACCA-2",
+ "tSNE_1": -23.5376,
+ "tSNE_2": 18.3452,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GATGAAATCATCGCTC-2",
+ "tSNE_1": -18.5387,
+ "tSNE_2": 16.2848,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGCTGGTTCTCTGTCG-2",
+ "tSNE_1": -20.7707,
+ "tSNE_2": 16.7451,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGGCACTGTAGCTAAA-2",
+ "tSNE_1": -14.7741,
+ "tSNE_2": 15.0596,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AACCGCGCACATGTGT-3",
+ "tSNE_1": -22.6301,
+ "tSNE_2": 17.6947,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AAGCCGCTCATCATTC-3",
+ "tSNE_1": -20.7006,
+ "tSNE_2": 16.8504,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ACTGTCCCACAAGTAA-3",
+ "tSNE_1": -21.4474,
+ "tSNE_2": 18.0482,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGGTCATAGAATTGTG-3",
+ "tSNE_1": -23.3847,
+ "tSNE_2": 17.3526,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "AGTAGTCCATCCCATC-3",
+ "tSNE_1": -15.6392,
+ "tSNE_2": 16.1107,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATAACGCAGTGTACTC-3",
+ "tSNE_1": -23.7037,
+ "tSNE_2": 18.3586,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATCACGACATGTCGAT-3",
+ "tSNE_1": -21.0351,
+ "tSNE_2": 16.9621,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATGTGTGAGAGAGCTC-3",
+ "tSNE_1": -24.07,
+ "tSNE_2": 17.7208,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "ATTGGACTCGCCAAAT-3",
+ "tSNE_1": -20.608,
+ "tSNE_2": 16.909,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGAGAGTCAATAAGG-3",
+ "tSNE_1": -23.9157,
+ "tSNE_2": 17.8152,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CAGTAACCAATAGCGG-3",
+ "tSNE_1": -18.8431,
+ "tSNE_2": 16.5868,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATTATCCATGCCCGA-3",
+ "tSNE_1": -24.0133,
+ "tSNE_2": 17.8197,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CATTCGCAGATCGGGT-3",
+ "tSNE_1": -18.9964,
+ "tSNE_2": 16.4901,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCGTGGAGTAATTGGA-3",
+ "tSNE_1": -21.1534,
+ "tSNE_2": 17.2507,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CCTACACTCCTGCTTG-3",
+ "tSNE_1": -20.4896,
+ "tSNE_2": 16.8991,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGACCTTAGCTTTGGT-3",
+ "tSNE_1": -22.5618,
+ "tSNE_2": 17.5428,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGAGAAGAGGCACATG-3",
+ "tSNE_1": -21.0345,
+ "tSNE_2": 17.6597,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGATGGCGTTAGGGTG-3",
+ "tSNE_1": -23.6934,
+ "tSNE_2": 17.6239,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "CGCTTCATCTTGTATC-3",
+ "tSNE_1": -15.8697,
+ "tSNE_2": 15.6129,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAAACTCCAGGCTGAA-3",
+ "tSNE_1": -17.4344,
+ "tSNE_2": 15.8167,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GAAATGACAATGTTGC-3",
+ "tSNE_1": -23.4594,
+ "tSNE_2": 18.2431,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GATCGCGAGTCATCCA-3",
+ "tSNE_1": -18.9151,
+ "tSNE_2": 16.3839,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCCTCTAAGCCAGTTT-3",
+ "tSNE_1": -23.1095,
+ "tSNE_2": 17.4316,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GCGAGAAAGCCCAGCT-3",
+ "tSNE_1": -17.2944,
+ "tSNE_2": 15.6519,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGGAGATTCCCAAGTA-3",
+ "tSNE_1": -21.4392,
+ "tSNE_2": 17.2835,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GGTGAAGAGTAGATGT-3",
+ "tSNE_1": -14.4442,
+ "tSNE_2": 15.0197,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTACTTTGTCGAGTTT-3",
+ "tSNE_1": -24.4547,
+ "tSNE_2": 18.185,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "GTTTCTACACAGTCGC-3",
+ "tSNE_1": -19.1401,
+ "tSNE_2": 16.6857,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCAGGTACACATGTGT-3",
+ "tSNE_1": -19.9678,
+ "tSNE_2": 16.5925,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCATTTGTCGCAAGCC-3",
+ "tSNE_1": -21.3304,
+ "tSNE_2": 17.5042,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TCGGTAATCTGGCGAC-3",
+ "tSNE_1": -22.1507,
+ "tSNE_2": 17.6736,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGACTAGAGTTGCAGG-3",
+ "tSNE_1": -24.1653,
+ "tSNE_2": 18.0591,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGCGGGTAGGATATAC-3",
+ "tSNE_1": -24.2801,
+ "tSNE_2": 18.3042,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TGGCTGGGTTTGTTTC-3",
+ "tSNE_1": -21.8875,
+ "tSNE_2": 17.0583,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TTATGCTTCAGTTAGC-3",
+ "tSNE_1": -23.6449,
+ "tSNE_2": 17.7438,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ },
+ {
+ "cell_id": "TTTCCTCGTCCCTACT-3",
+ "tSNE_1": -20.8017,
+ "tSNE_2": 16.7693,
+ "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]
+ }
+ ],
+ "11": [
+ {
+ "cell_id": "AAAGTAGCATACCATG-1",
+ "tSNE_1": -16.8276,
+ "tSNE_2": -14.404,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AACTTTCCAACCGCCA-1",
+ "tSNE_1": -16.2589,
+ "tSNE_2": -13.1502,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACTTTCACAAAGTGCG-1",
+ "tSNE_1": -13.0637,
+ "tSNE_2": -11.9657,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGCGTATAGAATAGGG-1",
+ "tSNE_1": -16.2791,
+ "tSNE_2": -12.382,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGGTCCGAGCTTCGCG-1",
+ "tSNE_1": -16.9949,
+ "tSNE_2": -14.0887,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATAAGAGGTGACCAAG-1",
+ "tSNE_1": -15.2609,
+ "tSNE_2": -13.3601,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAAGAAATCAGCACAT-1",
+ "tSNE_1": -16.8725,
+ "tSNE_2": -13.379,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CACAGGCCAAGCGTAG-1",
+ "tSNE_1": -17.283,
+ "tSNE_2": -11.151,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGATCAGTGCAGTAG-1",
+ "tSNE_1": -16.7706,
+ "tSNE_2": -16.7741,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAGCTAAAGGCTCTTA-1",
+ "tSNE_1": -17.1143,
+ "tSNE_2": -12.3847,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CATGACATCCGGCACA-1",
+ "tSNE_1": -17.5426,
+ "tSNE_2": -16.717,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTAAAGTCACCATAG-1",
+ "tSNE_1": -16.6883,
+ "tSNE_2": -16.0634,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTTACGAGAGACGAA-1",
+ "tSNE_1": -16.1001,
+ "tSNE_2": -15.6111,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CGGAGTCCAGTTTACG-1",
+ "tSNE_1": -17.0763,
+ "tSNE_2": -13.1935,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CTTAGGACATGCTAGT-1",
+ "tSNE_1": -15.6687,
+ "tSNE_2": -13.0222,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGCGTGTAGGTACTCT-1",
+ "tSNE_1": -16.7961,
+ "tSNE_2": -15.2261,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTATTCTGTAAGGGCT-1",
+ "tSNE_1": -16.695,
+ "tSNE_2": -13.3387,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTATTCTTCACGACTA-1",
+ "tSNE_1": -17.8535,
+ "tSNE_2": -12.6449,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTGAAGGTCGGTTCGG-1",
+ "tSNE_1": -16.6379,
+ "tSNE_2": -12.6383,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCGGGTTCCGTTGCT-1",
+ "tSNE_1": -16.5683,
+ "tSNE_2": -13.8161,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGGTTCCGTACGCACC-1",
+ "tSNE_1": -17.3581,
+ "tSNE_2": -13.5342,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGTGGTACACTGCCAG-1",
+ "tSNE_1": -16.096,
+ "tSNE_2": -15.9088,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTTGGTTGTTCTGAAC-1",
+ "tSNE_1": -15.7349,
+ "tSNE_2": -13.0077,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ACACCGGCACGACGAA-2",
+ "tSNE_1": -15.5671,
+ "tSNE_2": -12.7004,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATAACGCTCTGCCAGG-2",
+ "tSNE_1": -14.8009,
+ "tSNE_2": -11.5054,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "ATTCTACTCATTATCC-2",
+ "tSNE_1": -10.2672,
+ "tSNE_2": -14.8139,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAAATGAGTCGCATCG-2",
+ "tSNE_1": -16.5399,
+ "tSNE_2": -16.1276,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GAATAAGAGGACTGGT-2",
+ "tSNE_1": -15.5345,
+ "tSNE_2": -12.2254,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GCTGCAGGTTGTGGCC-2",
+ "tSNE_1": -17.0984,
+ "tSNE_2": -11.9282,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GGAATAAAGGCATTGG-2",
+ "tSNE_1": -10.7912,
+ "tSNE_2": -13.5184,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TAGAGCTTCTTGAGGT-2",
+ "tSNE_1": -14.2595,
+ "tSNE_2": -11.0687,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TCATTTGTCAACGCTA-2",
+ "tSNE_1": -16.0886,
+ "tSNE_2": -14.112,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCGTGGAGAATGTGT-2",
+ "tSNE_1": -11.6043,
+ "tSNE_2": -10.4042,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTAGGACAGATAGGAG-2",
+ "tSNE_1": -14.3018,
+ "tSNE_2": -12.3843,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTCTTAGCAAGAGTCG-2",
+ "tSNE_1": -11.4221,
+ "tSNE_2": -10.4904,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AACCGCGGTGCGATAG-3",
+ "tSNE_1": -15.6322,
+ "tSNE_2": -13.6354,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "AGAGCTTTCGTCACGG-3",
+ "tSNE_1": -9.4661,
+ "tSNE_2": -16.47,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CAACCTCAGTGTTTGC-3",
+ "tSNE_1": -15.5977,
+ "tSNE_2": -11.8226,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "CCTTCCCAGGAACTGC-3",
+ "tSNE_1": -16.7049,
+ "tSNE_2": -16.1879,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "GTAACTGCATGGGAAC-3",
+ "tSNE_1": -14.5912,
+ "tSNE_2": -12.5136,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGCCAAATCTATGTGG-3",
+ "tSNE_1": -15.6673,
+ "tSNE_2": -13.3088,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TGGGCGTGTCACAAGG-3",
+ "tSNE_1": -15.0332,
+ "tSNE_2": -13.0462,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ },
+ {
+ "cell_id": "TTCCCAGCAGGCTGAA-3",
+ "tSNE_1": -16.4155,
+ "tSNE_2": -12.1838,
+ "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]
+ }
+ ]
+}
diff --git a/src/static/raw_data/outputs.json b/src/static/raw_data/outputs.json
new file mode 100644
index 0000000..1be801a
--- /dev/null
+++ b/src/static/raw_data/outputs.json
@@ -0,0 +1,16 @@
+{
+ "seurat_object": ["seurat_object.rds"],
+ "initial_cell_count": [1662],
+ "final_cell_count": [1662],
+ "gene_count": [17047],
+ "project_name": ["sPARcRNA"],
+ "cluster_count": [12],
+ "tsne_plot": ["tsne_plot.png"],
+ "tsne_data_csv": ["tmp_output//tsne_data.csv"],
+ "top_markers_csv": ["tmp_output//top10_markers.csv"],
+ "gsea_results_csv": ["tmp_output//gsea_results.csv"],
+ "integrated_tsne_gsea_csv": ["tmp_output//integrated_tsne_gsea.csv"],
+ "cluster_info_csv": ["tmp_output//cluster_info.csv"],
+ "cell_gene_data_csv": ["tmp_output//cell_gene_data.csv"],
+ "cluster_avg_expression_csv": ["tmp_output//cluster_avg_expression.csv"]
+}
diff --git a/src/static/raw_data/top10_markers.json b/src/static/raw_data/top10_markers.json
new file mode 100644
index 0000000..0a79ce4
--- /dev/null
+++ b/src/static/raw_data/top10_markers.json
@@ -0,0 +1,1082 @@
+[
+ {
+ "p_val": 1.565e-141,
+ "avg_log2FC": 3.2291,
+ "pct.1": 0.954,
+ "pct.2": 0.356,
+ "p_val_adj": 2.6679e-137,
+ "cluster": "0",
+ "gene": "Etl4"
+ },
+ {
+ "p_val": 3.4303e-114,
+ "avg_log2FC": 3.2153,
+ "pct.1": 0.586,
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diff --git a/astro/src/data/tsne_data.json b/src/static/raw_data/tsne_data.json
similarity index 67%
rename from astro/src/data/tsne_data.json
rename to src/static/raw_data/tsne_data.json
index 8df4f6b..200d760 100644
--- a/astro/src/data/tsne_data.json
+++ b/src/static/raw_data/tsne_data.json
@@ -1,11636 +1,11636 @@
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+ "tSNE_2": 12.4366,
"_row": "TGGGAAGTCCATTCTA-3"
},
{
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- "cluster": "9",
- "tSNE_1": -10.3667,
- "tSNE_2": -16.4012,
+ "cluster": "11",
+ "tSNE_1": -15.0332,
+ "tSNE_2": -13.0462,
"_row": "TGGGCGTGTCACAAGG-3"
},
{
"cell_id": "TGGTTCCTCGTGTAGT-3",
"cluster": "2",
- "tSNE_1": -16.3169,
- "tSNE_2": -5.3624,
+ "tSNE_1": -27.0562,
+ "tSNE_2": -1.7207,
"_row": "TGGTTCCTCGTGTAGT-3"
},
{
"cell_id": "TGTGGTACACTAAGTC-3",
- "cluster": "0",
- "tSNE_1": 10.5186,
- "tSNE_2": 22.9345,
+ "cluster": "4",
+ "tSNE_1": 27.4625,
+ "tSNE_2": 20.6889,
"_row": "TGTGGTACACTAAGTC-3"
},
{
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- "cluster": "0",
- "tSNE_1": -3.6429,
- "tSNE_2": 19.4996,
+ "cluster": "1",
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+ "tSNE_2": 13.5501,
"_row": "TGTTCCGTCGGCGCAT-3"
},
{
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- "cluster": "0",
- "tSNE_1": -6.3489,
- "tSNE_2": 4.6669,
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+ "tSNE_1": -4.5067,
+ "tSNE_2": 2.9442,
"_row": "TGTTCCGTCTATGTGG-3"
},
{
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"cluster": "2",
- "tSNE_1": -23.451,
- "tSNE_2": -5.6895,
+ "tSNE_1": -35.5882,
+ "tSNE_2": -3.0214,
"_row": "TTAGGCATCTGGCGTG-3"
},
{
"cell_id": "TTATGCTTCAGTTAGC-3",
"cluster": "10",
- "tSNE_1": -27.6334,
- "tSNE_2": 15.1536,
+ "tSNE_1": -23.6449,
+ "tSNE_2": 17.7438,
"_row": "TTATGCTTCAGTTAGC-3"
},
{
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- "cluster": "9",
- "tSNE_1": -11.6915,
- "tSNE_2": -16.3166,
+ "cluster": "11",
+ "tSNE_1": -16.4155,
+ "tSNE_2": -12.1838,
"_row": "TTCCCAGCAGGCTGAA-3"
},
{
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- "cluster": "1",
- "tSNE_1": 21.2248,
- "tSNE_2": 16.8602,
+ "cluster": "0",
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+ "tSNE_2": 10.4912,
"_row": "TTCTTAGCATAAGACA-3"
},
{
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- "cluster": "0",
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- "tSNE_2": 18.0315,
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+ "tSNE_1": 3.6905,
+ "tSNE_2": 13.5885,
"_row": "TTGCCGTAGAGCTGGT-3"
},
{
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- "cluster": "0",
- "tSNE_1": -2.363,
- "tSNE_2": 16.4478,
+ "cluster": "1",
+ "tSNE_1": 4.5654,
+ "tSNE_2": 15.6867,
"_row": "TTGCCGTGTATTCGTG-3"
},
{
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"cluster": "2",
- "tSNE_1": -22.8701,
- "tSNE_2": -8.6377,
+ "tSNE_1": -33.4762,
+ "tSNE_2": -5.5996,
"_row": "TTGCCGTTCGCAAGCC-3"
},
{
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- "cluster": "0",
- "tSNE_1": 11.1191,
- "tSNE_2": 12.028,
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+ "tSNE_2": 21.3262,
"_row": "TTGCGTCCATTCTTAC-3"
},
{
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- "cluster": "4",
- "tSNE_1": 17.115,
- "tSNE_2": 14.9617,
+ "cluster": "6",
+ "tSNE_1": 18.4988,
+ "tSNE_2": 11.0718,
"_row": "TTGGAACCACAGATTC-3"
},
{
"cell_id": "TTGGCAACATTTGCTT-3",
"cluster": "5",
- "tSNE_1": -7.8349,
- "tSNE_2": -27.9256,
+ "tSNE_1": -11.6019,
+ "tSNE_2": -25.8841,
"_row": "TTGGCAACATTTGCTT-3"
},
{
"cell_id": "TTGTAGGCAGGCTCAC-3",
- "cluster": "4",
- "tSNE_1": 4.7808,
- "tSNE_2": 12.7972,
+ "cluster": "1",
+ "tSNE_1": 6.1261,
+ "tSNE_2": 9.6196,
"_row": "TTGTAGGCAGGCTCAC-3"
},
{
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- "cluster": "0",
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- "tSNE_2": 18.8959,
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+ "tSNE_2": 19.0513,
"_row": "TTTACTGCAATGTAAG-3"
},
{
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- "cluster": "1",
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- "tSNE_2": 6.164,
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+ "tSNE_2": 4.8054,
"_row": "TTTATGCTCACGACTA-3"
},
{
"cell_id": "TTTCCTCGTCCCTACT-3",
"cluster": "10",
- "tSNE_1": -25.6488,
- "tSNE_2": 15.3805,
+ "tSNE_1": -20.8017,
+ "tSNE_2": 16.7693,
"_row": "TTTCCTCGTCCCTACT-3"
},
{
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- "cluster": "0",
- "tSNE_1": 9.6317,
- "tSNE_2": 4.6667,
+ "cluster": "1",
+ "tSNE_1": 6.3328,
+ "tSNE_2": 11.2445,
"_row": "TTTGCGCAGAAGAAGC-3"
},
{
"cell_id": "TTTGGTTTCTGCAAGT-3",
- "cluster": "1",
- "tSNE_1": 1.0208,
- "tSNE_2": 10.8332,
+ "cluster": "0",
+ "tSNE_1": 10.1833,
+ "tSNE_2": 10.8578,
"_row": "TTTGGTTTCTGCAAGT-3"
},
{
"cell_id": "TTTGTCACATCGGAAG-3",
"cluster": "3",
- "tSNE_1": 19.2272,
- "tSNE_2": -16.9247,
+ "tSNE_1": 18.3519,
+ "tSNE_2": -17.7539,
"_row": "TTTGTCACATCGGAAG-3"
}
]
diff --git a/src/static/raw_data_js/cluster_avg_expression.js b/src/static/raw_data_js/cluster_avg_expression.js
new file mode 100644
index 0000000..e8ff125
--- /dev/null
+++ b/src/static/raw_data_js/cluster_avg_expression.js
@@ -0,0 +1 @@
+const cluster_avg_expression = {"0": [{"Nmu": 0.0756, "Grp": 0.036, "Vip": 0.4247, "Penk": 0.2261, "Calcb": 0.0384, "Dcn": 0.1413, "Grm7": 0.1848, "Sgcz": 0.1312, "Kctd16": 0.0602, "Ntng1": 0.0844, "Mgp": 0.137, "Tac1": 0.4151, "Gal": 0.1998, "Nxph2": 0.0113, "Klhl1": 0.0609, "Sst": 0.1087, "Mgat4c": 0.0578, "Bglap": 0.2592, "Myh11": 0.2229, "Lum": 0.0491, "Ano5": 0.0263, "Ccl21a": 0.0428, "Cntn5": 0.1592, "Scgn": 0.0437, "Cd24a": 0.2885, "Acta2": 0.3084, "Tmeff2": 0.0442, "Npy": 0.0469, "Kcnh7": 0.0509, "Actg2": 0.3355, "Ebf1": 0.047, "Cartpt": 0.1597, "Mt3": 0.4746, "Calb2": 0.4025, "Kctd8": 0.0435, "Cck": 0, "Serpini1": 0.0682, "Col1a2": 0.2942, "H2-Aa": 0.0623, "Cd74": 0.0497, "Nnat": 0.0954, "Bglap2": 0.1257, "Dbh": 0.0914, "Col25a1": 0.0453, "Ano1": 0.0072, "Pcsk5": 0.0081, "Flrt2": 0.0208, "Nefl": 0.053, "9330185C12Rik": 0.0076, "Crabp1": 0.0675, "Unc5d": 0.0911, "Slc17a6": 0.005, "Stac": 0.0407, "H2-Ab1": 0.0518, "Nefm": 0.0496, "Kit": 0, "Myl1": 0.0355, "Ly6c1": 0.0203, "Trps1": 0.6095, "Cckar": 0.0063, "Cbln2": 0.0236, "Meis2": 0.0545, "L3mbtl4": 0.0534, "Lingo2": 0.1701, "Pcp4l1": 0.0658, "Tpm2": 0.3865, "Gja1": 0.019, "Bglap3": 0.1856, "Zfp804a": 0.109, "Adcyap1": 0.0119, "Otor": 0.7207, "Fmo2": 0.0243, "Fut9": 0.0051, "Brinp3": 0.4951, "Fbln1": 0.0809, "Mmrn1": 0.0195, "Gm5424": 0.2958, "Igfbp6": 0.01, "Bmpr1b": 0.0184, "Kcnb2": 0.1938, "Cntnap2": 0.364, "Grin3a": 0.0228, "Ndufa4l2": 0.0115, "Nxph1": 0.0326, "Skap1": 0.0922, "Pcp4": 0.1351, "H2-Eb1": 0.0507, "Kif26b": 0.1631, "S100a11": 0.4701, "Clec3b": 0.0056, "Unc5c": 0.0853, "Cpne4": 0.155, "Lgals1": 0.702, "Rab27b": 0.0516, "Cdh18": 0.1883, "Mylk": 0.192, "Resp18": 0.1011, "Myl9": 0.4731, "Cnn1": 0.127, "Col1a1": 0.244, "Opcml": 0.1566, "Gda": 0.0098, "Tagln": 0.3835, "Pcsk1": 0.0215, "Sorcs3": 0.0284, "Aspn": 0.0335, "Sfrp4": 0.0106, "Gm20754": 0.1184, "Asic2": 0.1797, "Svep1": 0.0374, "Pbx3": 0.1672, "Gna14": 0.0414, "Dcc": 0.1665, "Cldn5": 0.0064, "Fam19a2": 0.0415, "C3": 0.0105, "Nell1": 0.0554, "Htr3a": 0.1165, "Gm14661": 0.0616, "Pdlim2": 0.024, "Olfm3": 0.0177, "Hpca": 0.0102, "Chsy3": 0.0281, "Pdyn": 0.0109, "Prr16": 0.011, "Ass1": 0.6292, "Cntn3": 0.0715, "Gng2": 0.7005, "Sntg2": 0.0845, "Myh3": 0, "Sncg": 0.5718, "Col3a1": 0.877, "Fabp4": 0, "Fbxo2": 0.0396, "Ptprt": 0.1248, "Tlx2": 0.0404, "Pdgfra": 0.0198, "Eya1": 0.0876, "Camp": 0.0165, "Vgf": 0.0221, "Slitrk4": 0.0053, "Oprk1": 0.0216, "Robo2": 0.6326, "Tm4sf4": 0.1375, "Cmah": 0.0115, "Pcdh10": 0.161, "Adamts1": 0.047, "Cilp": 0.0191, "Hand1": 0.0066, "Ces1d": 0, "Cox8b": 0.04, "Adamtsl3": 0.013, "Tenm2": 0.1278, "Reln": 0.0382, "Nos1": 0.2622, "Zfp804b": 0.1392, "Chrm3": 0.0481, "Hcn1": 0.0813, "Ptger3": 0.0061, "Ctla2a": 0, "Pi16": 0.0054, "Gng8": 0.0068, "Sez6l": 0.0356, "Dpp10": 0.0715, "Calb1": 0.0105, "Kirrel3": 0.2015, "Cfh": 0.0222, "Abca9": 0.0262, "Lrp1b": 0.5026, "Nrip3": 0.0188, "Tnr": 0.0682, "Rmst": 0, "Des": 0.1879, "Fbxw15": 0.0095, "Mfap4": 0.0645, "March1": 0.0411, "Dpt": 0.0307, "Ntm": 0.4278, "Mpz": 0.0123, "Cytl1": 0, "Ifitm2": 0.5023, "Lgr5": 0.0143, "Cpne8": 0.0579, "Gpr149": 0.0252, "Chgb": 0.1253, "Tnc": 0.0339, "Arhgap28": 0.0118, "Ntrk3": 0.0637, "Gm21847": 0.0208, "Ccdc85a": 0.0413, "Col4a6": 0.0262, "Gm27166": 0, "Plcl1": 0.7162, "Htra3": 0.0151, "Camk1d": 0.0699, "Tagln3": 0.0945, "Adarb2": 1.0866, "9530059O14Rik": 0.0154, "Ngfr": 0.1685, "Ddc": 0.0617, "Eln": 0.3252, "Spock1": 0.1214, "Sema3e": 0.9085, "Fam19a1": 0.1417, "Pdlim3": 0.0647, "Kcnd2": 0.3615, "Kcnab1": 0.0949, "Pcsk1n": 1.5513, "Sema5a": 0.0601, "3300002A11Rik": 0.0185, "St18": 0.0295, "Krtdap": 0, "Cdh8": 0.1377, "Ly6e": 0.0804, "Egfem1": 0.114, "Inpp4b": 0.0479, "Ifitm1": 0.0131, "Gpx3": 0.1164, "Rbpms": 0.1876, "Inmt": 0, "Igfbp5": 0.3684, "Grik1": 0.0509, "C1ql1": 0.3692, "Sox18": 0, "Gpc6": 1.2516, "Rbfox1": 0.2669, "Thsd7b": 0.1054, "Vav3": 0.0229, "Moxd1": 0.0229, "St8sia2": 0.0204, "Sstr2": 0.0183, "Rab3b": 0.0718, "Rprml": 0.0221, "Pdzrn4": 0.0653, "Gpc5": 0.1155, "Fbxw24": 0.0112, "Synpr": 0.1013, "Htr4": 0.0092, "Dgkg": 0.0611, "Galntl6": 0.3693, "Cst12": 0.0052, "Slc35f4": 0.0051, "Iigp1": 0.0096, "Gpm6a": 0.0188, "Egfr": 0.0122, "Col6a3": 0.0413, "Pde1a": 0.0609, "Slc4a4": 0.1212, "Dach2": 0.0153, "Lmo7": 0.0477, "Sv2c": 0.0979, "Apod": 0.7708, "Gap43": 0.4287, "Sphkap": 0.0785, "Lyz2": 0.0173, "Pde4b": 1.0913, "Cadps2": 0.1004, "RP23-428N8.3": 0, "Plxna4": 0.7827, "Sult1e1": 0, "Rgs5": 0.0266, "Alk": 0.2696, "Fn1": 0.102, "Spock3": 0.0599, "S100a10": 0.6946, "Bnc2": 0.1197, "Adam33": 0.0071, "Lgals3": 0.0432, "Lyve1": 0, "Kctd12": 0.171, "Pgm5": 0.0383, "Car10": 0.025, "Fmod": 0.0055, "Prune2": 0.0717, "Tmem35": 0.0174, "Plcxd3": 0.0832, "C1qc": 0.0089, "Abi3bp": 0.0774, "Fbxl7": 0.2328, "Npy2r": 0.0107, "Pcolce": 0.0558, "Spryd3": 0.1172, "Crispld1": 0.0112, "Fat3": 0.0214, "Hs6st3": 0.1386, "Sema3a": 0.0446, "A230006K03Rik": 0.0181, "Rfx6": 0.012, "Rspo2": 0.0547, "Fndc1": 0.0245, "Ms4a4d": 0.007, "A830018L16Rik": 0.0877, "Schip1": 0, "Dmkn": 0.0182, "Egr1": 0.021, "A330069E16Rik": 0.0264, "Zfp385b": 0.0051, "Ano2": 0.021, "Stxbp5l": 0.036, "Cntnap5b": 0.1234, "Gm28905": 0.0289, "Amigo2": 0.0269, "Fgl2": 0.3424, "Pld5": 0.1114, "Slc39a11": 0.0452, "Phlda1": 0.0333, "Fras1": 0.071, "Islr2": 0.0101, "Ptprr": 0.0862, "Laptm5": 0.0141, "Tcf21": 0, "Mgll": 0.0478, "Sdpr": 0.0114, "Mecom": 0.0354, "Kcnn2": 0.2167, "4933416M07Rik": 0.0069, "C77080": 0.031, "Mt2": 0.5288, "Trhde": 0.0386, "Lrrc7": 0.0466, "Mfsd4": 0.1143, "P2rx2": 0.1198, "Nrsn2": 0.0151, "Hspb1": 0.777, "Ccdc80": 0.0151, "Dach1": 0.049, "Nog": 0.0061, "Syt4": 0.1991, "Scg2": 0.3412, "Col8a1": 1.3377, "Ccdc3": 0.0061, "Angpt1": 0.039, "Ror1": 0.1935, "C1qtnf7": 0.0188, "Gm9844": 0.3385, "Fhl2": 0.0196, "Sult5a1": 0, "Bves": 0.0173, "Elavl2": 0.04, "Grin2b": 0.0203, "Zmat4": 0.0083, "Atp12a": 0, "Tacr1": 0.0138, "Basp1": 0.0686, "Clu": 0.2216, "Errfi1": 0.1276, "S100a4": 0.4467, "Unc13c": 0.0908, "Chodl": 0.0087, "Tmem132c": 0.0106, "Ccl2": 0.0058, "Stab1": 0.0116, "Vcan": 0.0929, "Tmsb10": 0.8826, "Gm4131": 0.079, "Gkn3": 0.0042, "Kcnj3": 0.0547, "Igf1": 0.0052, "Efr3a": 0.2591, "Kif22": 0.0182, "Astn2": 0.5806, "Gm30382": 0, "Calcrl": 0.0747, "4930447C04Rik": 0.0061, "Tubb2b": 0.1649, "Spon2": 0, "Nsg1": 0.3791, "Colec12": 0.0365, "Ache": 0.0928, "Slc24a2": 0.1214, "Arhgap15": 0.0771, "Nrxn3": 0.3367, "Slc44a5": 0.0884, "4930555F03Rik": 0.0268, "Igfbp3": 0, "Cdh12": 0.103, "Frmpd4": 0.2145, "Col6a1": 0.3701, "Gm11728": 0.0114, "BC048546": 0.0151, "6330403K07Rik": 0.3128, "Mall": 0.0057, "Atp5g1": 0.3858, "Cav1": 0.0197, "Nxph4": 0.0227, "Tuba1a": 1.4399, "Ly6a": 0, "Gucy2g": 0, "Plppr5": 0.005, "Ak5": 0.065, "Itga5": 0.0581, "Ctss": 0.0264, "Cygb": 0.051, "Rgs6": 0.1903, "Pkp1": 0.0083, "Slc5a7": 0.0644, "Cpa6": 0.1043, "Zcchc16": 0.0203, "Kdr": 0.0068, "Clstn2": 0.0181, "Tc2n": 0.0051, "A330008L17Rik": 0.0142, "Fstl4": 0.4982, "Fos": 0.0766, "Fibcd1": 0.0323, "Hsp90aa1": 0.4239, "Rtp3": 0.0156, "Sh3bgrl3": 0.1927, "Galnt18": 0.5357, "Chat": 0.0107, 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"Syn3": 0.1644, "Caln1": 0.061, "Adgre1": 0.0165, "Syt10": 0.0065, "Sox4": 0.1122, "Baiap3": 0, "Clybl": 0.2282, "Hpcal1": 0.0795, "Nox4": 0.1773, "Tmem163": 0.0183, "Prom1": 0.006, "Avil": 0.024, "Thbs2": 0.3404, "Abhd11os": 0.0128, "Brinp2": 0.0723, "Stxbp6": 0.0707, "Stmn2": 0.4056, "Eepd1": 0.0846, "Slc24a3": 0.1614, "Rasgrp3": 0.005, "Epha5": 0.1196, "Ctnna3": 1.7063, "Hba-a1": 0.0104, "Tmem204": 0, "Fgf10": 0.0196, "Ptpn22": 0.0178, "Kcnip4": 0.8558, "Steap4": 0.0059, "Ywhah": 0.5246, "Lamc3": 0.0353, "AW551984": 0.018, "Aqp1": 0.006, "Olfr78": 0.0054, "Met": 0.0146, "Flt4": 0.0173, "Tubb2a": 0.2614, "Arfgap3": 0.0756, "Ifi27l2a": 0.2447, "Nyap2": 0.0172, "Arpp21": 0.0688, "Svopl": 0, "Phox2a": 0.0593, "Dgkh": 0.0992, "Sntg1": 0.0823, "Lmod1": 0.013, "Btk": 0.0075, "Ooep": 0, "Galnt5": 0, "Rab3a": 0.1672, "9530026P05Rik": 0.2106, "Wfdc1": 0.0667, "Ly86": 0.0201, "Pamr1": 0.0116, "Gdf10": 0.0321, "Pcbd1": 0.0856, "Palm2": 0, "Fabp5": 0.1755, "Mrap2": 0.0274, "Rgs7": 0.1025, "Cnr1": 0.0984, "Man1a": 0.1099, "S100a13": 0.2688, "P2ry12": 0.0054, "Mllt11": 0.1904, "Ndrg4": 0.141, "Smtn": 0.1217, "Snrpn": 0, "Cadm2": 0.4809, "Cntnap5a": 0.0652, "Ptprc": 0.005, "Sctr": 0, "Agtr1b": 0.0056, "Cacnb2": 0.0761, "Prtg": 0.0718, "Lypd1": 0.0057, "Fxyd7": 0.2603, "Kcnt2": 0.0639, "Nwd2": 0.0568, "Gm26668": 0.1783, "Ano3": 0.0268, "Pak7": 0.0293, "Ltk": 0.0173, "Ptgfr": 0, "Dlc1": 0.5763, "Tmc1": 0.0055, "Kl": 0.0047, "Slc10a4": 0.0423, "Enpp2": 0.2854, "Map3k19": 0.0337, "Ptchd1": 0.0361, "Tmtc1": 0.0218, "Brinp1": 0.3852, "Nfatc1": 0.0979, "Uchl1": 0.8942, "Tmem59l": 0.0172, "Chchd10": 0.1692, "Gm5106": 0, "Pkd2l2": 0.0058, "Mfsd2a": 0.2258, "Ccbe1": 0.0054, "Car8": 0, "Neto1": 0.0053, "Calm1": 0.7401, "Zbbx": 0.0239, "Sparcl1": 0.3363, "Tmem178b": 0.0713, "Ebf2": 0.0159, "Synpo2": 0.1912, "Prkcdbp": 0.2448, "6330403A02Rik": 0.0744, "Cdh5": 0, "Mmrn2": 0.0042, "Lgi2": 0.0143, "Ubb": 1.4272, "Rnf144b": 0.0226, "Tmem108": 0.0113, "Muc13": 0.0123, "Galnt13": 0.0915, "Inpp5k": 0.1591, "Chn2": 0.0113, "Gm16070": 0, "Cyb561": 0.0471, "Oprd1": 0.0075, "Ndufb6": 0.2184, "Tmcc3": 0.1245, "Efnb2": 0.0353, "Pgam1": 0.2879, "Elk3": 0.0352, "Etl4": 3.5237, "9530026F06Rik": 0, "Avpr1a": 0.0116, "Endov": 0.0617, "Pcdh11x": 0.0458, "Ndst4": 0.0716, "Sv2b": 0.0162, "Mt1": 1.1983, "Enpep": 0.0042, "3110079O15Rik": 0, "Atp7a": 0.1639, "Gm15155": 0.072, "Twist2": 0, "Tnfrsf4": 0.0099, "Npas1": 0, "Rgs14": 0, "Htr2b": 0.0283, "Igfbp2": 0.1092, "Mmp3": 0, "Dsc3": 0.006, "Grid1": 0.448, "Derl3": 0.0279, "Hmga2": 0, "Nmb": 0.0414, "Rbp4": 0.0152, "Etv1": 0.3938, "Rgs2": 0.0591, "Prmt8": 0, "St3gal6": 0.0186, "Dlgap2": 0.0824, "Tmem196": 0.0255, "Id1": 0.0069, "Stc2": 0.005, "Rph3a": 0.0108, "Ret": 0.1156, "1700034P13Rik": 0.1457, "Nrp2": 0.0941, "Kcnc2": 0.0868, "RP23-353F16.3": 0.114, "Klhdc8a": 0, "Apba1": 0.3532, "Ogn": 0.0563, "Txn1": 0.3302, "Trpc7": 0, "Snx7": 0.1351, "Eme1": 0.0533, "Cldn11": 0.0072, "Ucp2": 0.0223, "Ppp1r14a": 0.0628, "St6galnac5": 0.0059, 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"Pla2g10os": 0, "Gm17518": 0, "Gm16191": 0.0055, "1700001C19Rik": 0.0125, "Lrg1": 0.0061, "Srd5a2": 0, "Lipf": 0, "Igsf1": 0.0111, "Nhs": 0.3743, "Gm14399": 0.0529, "Slc35d3": 0.0196, "Acot7": 0.2037, "Tln2": 0.2508, "Il33": 0.0051, "Rasgrf1": 0, "Atp6v1e1": 0.2928, "Tekt2": 0.0047, "Slit2": 0.1243, "Sema6a": 0.0989, "Mdga2": 0.3633, "Sytl2": 0.0065, "Thsd4": 0.5019, "Zfp709": 0.0053, "Tpm1": 0.3453, "Tubb5": 0.7095, "Esrrg": 0.0525, "Ace": 0, "Ghr": 0.1752, "S100a1": 0.2781, "Gch1": 0.0396, "Hint1": 0.7143, "Fkbp3": 0.1815, "Adamts5": 0.2267, "Pfn2": 0.1759, "Psma7": 0.3878, "Scube1": 0.1681, "Cd52": 0.0296, "Entpd3": 0.0435, "Sltm": 0.7695, "Sult4a1": 0.1424, "Trpc4": 0.0322, "Cfp": 0.012, "Ctnna2": 0.2309, "Rims3": 0.0511, "Nav3": 0.4841, "Ffar3": 0.0331, "Gm11273": 0.3915, "Nlrc4": 0.5937, "Itm2a": 0.3081, "Prelp": 0.0118, "Tmem255b": 0.0577, "Il13ra1": 0.0256, "Shisa9": 0.0151, "AI593442": 0, "Slc2a4": 0, "Gm28928": 0, "Ecscr": 0.017, "Nt5e": 0.0193, "Fam89a": 0.0371, "Cacnb4": 0.0053, "Ndufb11": 0.3732, "Kitl": 0.0788, "Gm765": 0.0289, "Entpd1": 0, "Lhfpl5": 0, "Pln": 0, "Gyltl1b": 0.0176, "L3hypdh": 0.02, "Thbd": 0, "Cxcl10": 0.0355, "Sema3g": 0, "Tubb4b": 0.6237, "Khdrbs2": 0.082, "Scn9a": 0.1033, "Eif3h": 0.2311, "Gm37401": 0.0918, "Mustn1": 0.036, "Flt1": 0.0038, "Ltf": 0, "Tmod1": 0.0833, "Ptprn": 0.1511, "S100a6": 2.0024, "Sdk1": 0.0642, "Gpr137c": 0.1129, "Meis1": 0.5077, "Postn": 0.5353, "Epha8": 0.0377, "Epb41l4a": 0.3374, "Sfta2": 0, "Tinagl1": 0.017, "Clvs1": 0.0436, "Meox2": 0.3306, "Slc36a1": 0.0203, "Glis3": 0.1075, "Trp53i11": 0.0766, "Tmod3": 0.2094, "Bex1": 0.145, "Gm11716": 0, "Slc6a12": 0, "4930527B05Rik": 0, "Oprm1": 0.0236, "Alcam": 1.7324, "Pdgfd": 0.5999, "Tpi1": 0.3045, "Rgs20": 0.0443, "Ets1": 0.0384, "Hnmt": 0.179, "Scml4": 0.0068, "Armc3": 0.0475, "Stmn4": 0.0639, "P2ry6": 0.0237, "Epyc": 0, "Pkm": 0.6691, "Prkg2": 0.0217, "Pcdh19": 0.0277, "Clstn3": 0.0333, "Lama2": 0.5247, "Dnaja1": 0.2452, "Map1b": 0.4897, "Ush1c": 0.0193, "Plch1": 0.0908, "Cox4i2": 0.003, "Cbln4": 0.0044, "C1qtnf2": 0, "Col4a5": 0.1381, "Pnmal2": 0.1517, "Plxna2": 0.0408, "Rims1": 0.2212, "Prdx5": 0.3273, "Ptprd": 0.5834, "Gm15886": 0.0177, "Gm11128": 0.0822, "Hoxb5": 0.271, "Timm8b": 0.1787, "Calm2": 1.157, "Mab21l2": 0.0371, "6430573F11Rik": 0.0364, "Pde11a": 0.0345, "Tuba1b": 0.9544, "Vsnl1": 0.0177, "Cend1": 0.018, "Pantr1": 0.149, "Nrgn": 0.0052, "Gm8773": 0, "Gm6871": 0.0113, "Htr2a": 0, "Pappa": 0.1137, "Gnal": 0.0987, "Tmem179": 0.0392, "Lpar4": 0.0829, "Txndc17": 0.1677, "Slit3": 0.0914, "AI607873": 0.005, "Gm13547": 0.0062, "Myo5c": 0.0083, "Ms4a6c": 0.008, "Gucy1a3": 0.0305, "Lrfn2": 0.0098, "Eef1e1": 0.0442, "Mad1l1": 0.5626, "Rnls": 0.1285, "Kcnk10": 0.0173, "Pfkfb3": 0.0527, "Celf3": 0.0811, "Fam183b": 0.0101, "Gpr88": 0.0061, "Tm4sf1": 0.2179, "Lrrc3b": 0.0109, "Pirt": 0.0858, "Adcyap1r1": 0.0502, "Pcdh15": 0.6331, "Necab1": 0.0446, "Ttll7": 0.0439, "Cyb5r3": 0.1356, "C77370": 0.0179, "Thy1": 0.0692, "Htr7": 0.0193, "Cyp7b1": 0.0457, "5330434G04Rik": 0.0806, "Scn1a": 0.0104, "Fibin": 0.1813, "Gm19705": 0.007, "Bdnf": 0, "Adgrl4": 0.0129, "Gm21814": 0.0267, "Mast4": 0.2109, "Sbspon": 0, "Gimap6": 0.0062, "Tnnt1": 0.0059, "Gpi1": 0.266, "Tenm3": 0.646, "Cntnap4": 0.0354, "Auts2": 1.5514, "Stambp": 0.0453, "Csrp2": 0.0389, "Clmp": 0.0542, "Hspb8": 0.1011, "Tenm4": 0.0343, "Cerk": 0.0513, "Pde4d": 1.7209, "Pak3": 0.0871, "Syt2": 0.0227, "Tll1": 0.0313, "Tmem132cos": 0.0043, "Kcnk13": 0.0183, "Ndufa11": 0.3269, "Rtn1": 0.4887, "Chrdl1": 0.0185, "Parm1": 0.1944, "Ccdc74a": 0.0117, "Lin28b": 0, "Pde10a": 0.3597, "Zfhx3": 0.8186, "Ndufa4": 0.7331, "Bag1": 0.1246, "Tspyl4": 0.0961, "Cacybp": 0.1589, "Rerg": 0.7456, "Gng3": 0.1693, "Nr2f2": 0.101, "Slc7a3": 0.0144, "Zwint": 0.3948, "Gstm1": 0.1055, "Pcdh17": 0.4429, "Sidt1": 0.0403, "Sept6": 0.0383, "Tmc3": 0.026, "P2ry1": 0.0276, "1500009L16Rik": 0.0326, "Rgs10": 0.0347, "Cox7a2": 0.566, "Tnfrsf12a": 0.0672, "Sez6l2": 0.0664, "Cox5b": 0.5763, "Qtrtd1": 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"Nrgn": 0, "Gm8773": 0, "Gm6871": 0, "Htr2a": 0, "Pappa": 0.295, "Gnal": 0.0695, "Tmem179": 0.0382, "Lpar4": 0.0334, "Txndc17": 0.1967, "Slit3": 0.0188, "AI607873": 0, "Gm13547": 0, "Myo5c": 0.014, "Ms4a6c": 0.0093, "Gucy1a3": 0.0475, "Lrfn2": 0, "Eef1e1": 0.0541, "Mad1l1": 0.4864, "Rnls": 0.0533, "Kcnk10": 0.0147, "Pfkfb3": 0.0193, "Celf3": 0.0523, "Fam183b": 0, "Gpr88": 0, "Tm4sf1": 0.1137, "Lrrc3b": 0.0206, "Pirt": 0.0591, "Adcyap1r1": 0.0084, "Pcdh15": 0.3779, "Necab1": 0.0088, "Ttll7": 0.0306, "Cyb5r3": 0.1117, "C77370": 0.0152, "Thy1": 0.0242, "Htr7": 0, "Cyp7b1": 0.0652, "5330434G04Rik": 0.0507, "Scn1a": 0.0077, "Fibin": 0.188, "Gm19705": 0.026, "Bdnf": 0, "Adgrl4": 0, "Gm21814": 0.0202, "Mast4": 0.3021, "Sbspon": 0.0077, "Gimap6": 0, "Tnnt1": 0.0071, "Gpi1": 0.2834, "Tenm3": 0.7822, "Cntnap4": 0.0175, "Auts2": 0.5377, "Stambp": 0.0742, "Csrp2": 0.0183, "Clmp": 0.0271, "Hspb8": 0.0469, "Tenm4": 0.0183, "Cerk": 0.0836, "Pde4d": 1.0681, "Pak3": 0.0621, "Syt2": 0.0177, "Tll1": 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"Armc3": 0.043, "Stmn4": 0.3983, "P2ry6": 0.1823, "Epyc": 0, "Pkm": 0.8967, "Prkg2": 0.0334, "Pcdh19": 0.0988, "Clstn3": 0.1187, "Lama2": 0.0654, "Dnaja1": 0.4676, "Map1b": 1.3381, "Ush1c": 0.0107, "Plch1": 0.0096, "Cox4i2": 0, "Cbln4": 0.0081, "C1qtnf2": 0, "Col4a5": 0.0326, "Pnmal2": 0.4482, "Plxna2": 0.658, "Rims1": 0.8675, "Prdx5": 0.2938, "Ptprd": 1.7278, "Gm15886": 0.0246, "Gm11128": 0, "Hoxb5": 0.9728, "Timm8b": 0.2083, "Calm2": 1.8758, "Mab21l2": 0.3284, "6430573F11Rik": 0.1193, "Pde11a": 0.2686, "Tuba1b": 1.4199, "Vsnl1": 0.1103, "Cend1": 0.2318, "Pantr1": 0.3328, "Nrgn": 0.0058, "Gm8773": 0.0031, "Gm6871": 0.0151, "Htr2a": 0.0046, "Pappa": 0.0507, "Gnal": 0.1419, "Tmem179": 0.4126, "Lpar4": 0, "Txndc17": 0.1744, "Slit3": 0.6172, "AI607873": 0, "Gm13547": 0.0063, "Myo5c": 0.006, "Ms4a6c": 0, "Gucy1a3": 0.473, "Lrfn2": 0.2828, "Eef1e1": 0.1288, "Mad1l1": 0.5034, "Rnls": 0.0554, "Kcnk10": 0.1487, "Pfkfb3": 0.1269, "Celf3": 0.9887, "Fam183b": 0.1368, "Gpr88": 0.0248, "Tm4sf1": 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"Gpr63": 0.0087, "Prkaca": 0.4791, "Cds2": 0.5036, "Dlg5": 0.2772, "Agmo": 0.1584, "Igf2bp2": 0.2452, "Eml5": 1.8575, "Hmx2": 0.2568, "Tubgcp5": 0.2178, "Kcnk3": 0.2038, "Ackr3": 0, "Sema6d": 0.5156, "Dusp3": 0.5481, "Ak1": 0.3585, "Prickle2": 1.4296, "Abca5": 0.7782, "Mrpl34": 0.0988, "Klf12": 0.9336, "Rbms2": 0.0687, "Mien1": 0.2743, "Fstl5": 0.7671, "Msrb1": 0.0673, "Gm13305": 0, "Mdga1": 0.119, "Tcp1": 0.4619, "Uqcrq": 0.8293, "Hk1": 0.5453, "Eef1a2": 1.2123, "Ccdc124": 0.459, "Terf2ip": 0.1742, "Ptpn14": 0, "E530001K10Rik": 0.0646, "Far2": 0.1098, "Pfdn1": 0.3862, "Emc4": 0.1227, "Chchd1": 0.2199, "Prr13": 0.2568, "Pitpnc1": 2.5943, "Kcng3": 0.3302, "Hcrtr1": 0, "Kcng1": 0, "Sertm1": 0.1383, "Mmp23": 0, "Kiss1r": 0, "Tmem30c": 0.023, "Gm38393": 0.2352, "RP23-407N2.2": 0.0293, "Guk1": 0.2835, "Serpine1": 0, "3100003L05Rik": 0.037, "Fry": 1.2333, "Mndal": 0.025, "Pth1r": 0.0511, "Kcnj6": 0.4019, "Slc7a2": 0.0149, "Mrpl17": 0.2985, "Edf1": 0.4685, "Gm10094": 0.0661, "Msra": 0.0576, "Sdhb": 0.2934, "Katnal2": 0.0416, "Myo1b": 0.1704, "Gm28410": 0, "Slco4c1": 0.0557, "Hoxd3os1": 0, "A930006I01Rik": 0.0623, "Hnf4a": 0, "Gm31415": 0, "Gm11228": 0, "Lrp8os2": 0, "Irf5": 0, "2310040G24Rik": 0, "Ssu2": 0, "Sbk3": 0.0314, "D930028M14Rik": 0.095, "Nlrp4a": 0.0182, "Gm15396": 0.0276, "Arg1": 0, "Ppp1r3b": 0.0087, "Ptk2b": 0.0273, "Gfral": 0, "Sox9": 0, "Ict1os": 0, "Nkapl": 0.0242, "Foxf2": 0, "Fgd3": 0.0368, "Npr3": 0, "Slc38a4": 0, "Slc9c1": 0, "Notch3": 0, "A830052D11Rik": 0, "AW112010": 0, "Fam72a": 0.0151, "Edn3": 0, "Thap1": 0, "Ltbp1": 0.1327, "Arhgef3": 1.8563, "2210016L21Rik": 0.2387, "Slc25a3": 0.6678, "Fads3": 0.0677, "2810459M11Rik": 0, "Gpc3": 0.1349, "Rpl10a": 0.7581, "Arid5b": 0.3889, "RP23-17C12.1": 0.0087, "A4galt": 0.4837, "Heyl": 0, "1700049G17Rik": 0.0553, "Abhd2": 0.2624, "Fbn1": 0.1814, "Man2a1": 0.0985, "Fam213b": 0.0678, "Frmpd1": 0.0423, "Vdac3": 0.4927, "Nhsl2": 0.6859, "Ifit1": 0.0467, "Hpcal4": 0.1196, "Eif3i": 0.1866, "Eif5a": 0.6116, "Mrps34": 0.1006, "Sh3gl2": 0.8721, "Stxbp1": 0.9932, "Maged1": 1.1305, "Gabra3": 0.1399, "Lrrcc1": 0.0756, "Pebp1": 0.6491, "Cox7a2l": 0.6646}]};
\ No newline at end of file
diff --git a/src/static/raw_data_js/cluster_info.js b/src/static/raw_data_js/cluster_info.js
new file mode 100644
index 0000000..5bc99fd
--- /dev/null
+++ b/src/static/raw_data_js/cluster_info.js
@@ -0,0 +1 @@
+const cluster_info = {"0": [{"centroid_x": 6.2672, "centroid_y": 4.4045, "top_pathways": ["GOBP_EPITHELIAL_CELL_PROLIFERATION", "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]}], "1": [{"centroid_x": 2.1316, "centroid_y": 12.9872, "top_pathways": ["GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "GOBP_TUBE_MORPHOGENESIS", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY"]}], "2": [{"centroid_x": -29.4455, "centroid_y": -7.1521, "top_pathways": ["GOBP_CELL_CELL_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOCC_SYNAPSE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]}], "3": [{"centroid_x": 13.5119, "centroid_y": -18.5979, "top_pathways": ["GOBP_CATION_TRANSPORT", "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "GOBP_ION_TRANSPORT", "GOBP_METAL_ION_TRANSPORT", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]}], "4": [{"centroid_x": 17.6909, "centroid_y": 21.6947, "top_pathways": ["GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOCC_PLASMA_MEMBRANE_PROTEIN_COMPLEX", "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "HP_ABNORMAL_REFLEX"]}], "5": [{"centroid_x": -8.6072, "centroid_y": -26.1015, "top_pathways": ["GOBP_ATP_METABOLIC_PROCESS", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_AXON", "GOCC_DISTAL_AXON", "GOCC_NEURON_PROJECTION_TERMINUS"]}], "6": [{"centroid_x": 19.5302, "centroid_y": 16.0661, "top_pathways": ["GOBP_REGULATION_OF_CELL_DIFFERENTIATION", "GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT", "GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS", "GOBP_TISSUE_DEVELOPMENT", "GOMF_SIGNALING_RECEPTOR_BINDING"]}], "7": [{"centroid_x": 6.8557, "centroid_y": -29.5982, "top_pathways": ["GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_REGULATION_OF_ION_TRANSPORT", "GOBP_REGULATION_OF_SYSTEM_PROCESS", "GOBP_SYNAPTIC_SIGNALING", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE"]}], "8": [{"centroid_x": -14.9967, "centroid_y": 16.0555, "top_pathways": ["HP_ABNORMAL_HAND_MORPHOLOGY", "HP_ABNORMAL_INFLAMMATORY_RESPONSE", "HP_ABNORMAL_SYSTEMIC_BLOOD_PRESSURE", "HP_FUNCTIONAL_ABNORMALITY_OF_THE_GASTROINTESTINAL_TRACT", "HP_NEOPLASM"]}], "9": [{"centroid_x": -10.9323, "centroid_y": -16.7047, "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOBP_NEUROGENESIS", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_NEURON_PROJECTION"]}], "10": [{"centroid_x": -20.9267, "centroid_y": 17.077, "top_pathways": ["GOBP_ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY", "GOBP_RESPONSE_TO_GROWTH_FACTOR", "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT"]}], "11": [{"centroid_x": -15.5099, "centroid_y": -13.4467, "top_pathways": ["GOBP_BIOLOGICAL_ADHESION", "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "GOCC_POSTSYNAPTIC_MEMBRANE", "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY"]}]};
\ No newline at end of file
diff --git a/src/static/raw_data_js/gsea_cluster_results.js b/src/static/raw_data_js/gsea_cluster_results.js
new file mode 100644
index 0000000..db1b5e6
--- /dev/null
+++ b/src/static/raw_data_js/gsea_cluster_results.js
@@ -0,0 +1 @@
+const gsea_cluster_results = {"0": [{"pathway": "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "NES": 1.8234, "pval": 0.0002, "padj": 0.1396, "size": 39}, {"pathway": "GOBP_EPITHELIAL_CELL_PROLIFERATION", "NES": 1.9626, "pval": 0.0004, "padj": 0.1396, "size": 20}, {"pathway": "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "NES": 1.6104, "pval": 0.0029, "padj": 0.6631, "size": 52}, {"pathway": "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT", "NES": 1.7606, "pval": 0.0038, "padj": 0.6631, "size": 22}, {"pathway": "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "NES": 1.5642, "pval": 0.0053, "padj": 0.6631, "size": 50}, {"pathway": "HP_NARROW_PALATE", "NES": 1.7668, "pval": 0.0056, "padj": 0.6631, "size": 16}, {"pathway": "GOBP_SKELETAL_SYSTEM_DEVELOPMENT", "NES": 1.6198, "pval": 0.0061, "padj": 0.6631, "size": 35}, {"pathway": "HP_INCREASED_BLOOD_PRESSURE", "NES": 1.7271, "pval": 0.0086, "padj": 0.818, "size": 16}, {"pathway": "HP_ABNORMALITY_IRIS_MORPHOLOGY", "NES": 1.6754, "pval": 0.011, "padj": 0.8573, "size": 18}, {"pathway": "GOBP_REGULATION_OF_GROWTH", "NES": 1.5603, "pval": 0.0113, "padj": 0.8573, "size": 36}, {"pathway": "GOBP_NERVOUS_SYSTEM_PROCESS", "NES": 1.5244, "pval": 0.0132, "padj": 0.8573, "size": 42}, {"pathway": "GOBP_SUPRAMOLECULAR_FIBER_ORGANIZATION", "NES": 1.4847, "pval": 0.0155, "padj": 0.8573, "size": 48}, {"pathway": "HP_LONG_FINGERS", "NES": 1.6699, "pval": 0.0162, "padj": 0.8573, "size": 15}, {"pathway": "GOBP_CELL_GROWTH", "NES": 1.5799, "pval": 0.0168, "padj": 0.8573, "size": 25}, {"pathway": "HP_ABNORMALITY_OF_LOWER_LIMB_JOINT", "NES": 1.5731, "pval": 0.0169, "padj": 0.8573, "size": 28}, {"pathway": "GOBP_CONNECTIVE_TISSUE_DEVELOPMENT", "NES": 1.5573, "pval": 0.0221, "padj": 0.945, "size": 24}, {"pathway": "GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_SIZE", "NES": 1.5812, "pval": 0.0238, "padj": 0.945, "size": 19}, {"pathway": "GOBP_RAS_PROTEIN_SIGNAL_TRANSDUCTION", "NES": 1.5469, "pval": 0.0248, "padj": 0.945, "size": 23}, {"pathway": "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "NES": 1.4463, "pval": 0.0251, "padj": 0.945, "size": 45}, {"pathway": "GOBP_NEGATIVE_REGULATION_OF_GROWTH", "NES": 1.6083, "pval": 0.0257, "padj": 0.945, "size": 15}], "1": [{"pathway": "GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND", "NES": 1.8265, "pval": 0.0013, "padj": 0.4218, "size": 26}, {"pathway": "GOMF_STRUCTURAL_MOLECULE_ACTIVITY", "NES": 1.7058, "pval": 0.002, "padj": 0.4218, "size": 48}, {"pathway": "GOBP_TUBE_MORPHOGENESIS", "NES": 1.6614, "pval": 0.0045, "padj": 0.4218, "size": 38}, {"pathway": "GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE", "NES": 1.6077, "pval": 0.0053, "padj": 0.4218, "size": 52}, {"pathway": "GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM", "NES": 1.7667, "pval": 0.0057, "padj": 0.4218, "size": 17}, {"pathway": "GOCC_COLLAGEN_CONTAINING_EXTRACELLULAR_MATRIX", "NES": 1.5799, "pval": 0.0067, "padj": 0.4218, "size": 51}, {"pathway": "GOBP_TISSUE_MORPHOGENESIS", "NES": 1.7193, "pval": 0.0076, "padj": 0.4218, "size": 19}, {"pathway": "HP_MUSCLE_WEAKNESS", "NES": 1.6467, "pval": 0.0076, "padj": 0.4218, "size": 34}, {"pathway": "GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT", "NES": 1.5573, "pval": 0.0123, "padj": 0.4627, "size": 42}, {"pathway": "GOCC_ENDOPLASMIC_RETICULUM", "NES": 1.5062, "pval": 0.0123, "padj": 0.4627, "size": 58}, {"pathway": "HP_ABNORMALITY_OF_THE_MUSCULATURE_OF_THE_LIMBS", "NES": 1.6313, "pval": 0.0141, "padj": 0.4627, "size": 22}, {"pathway": "GOBP_RESPONSE_TO_LIPID", "NES": 1.6102, "pval": 0.0157, "padj": 0.4627, "size": 24}, {"pathway": "GOBP_TUBE_DEVELOPMENT", "NES": 1.5163, "pval": 0.0169, "padj": 0.4627, "size": 42}, {"pathway": "GOCC_ENDOPLASMIC_RETICULUM_LUMEN", "NES": 1.5627, "pval": 0.0172, "padj": 0.4627, "size": 31}, {"pathway": "GOBP_CELL_CELL_SIGNALING", "NES": 1.5109, "pval": 0.0189, "padj": 0.4627, "size": 41}, {"pathway": "GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT", "NES": 1.5457, "pval": 0.0194, "padj": 0.4627, "size": 32}, {"pathway": "GOBP_BLOOD_VESSEL_MORPHOGENESIS", "NES": 1.5407, "pval": 0.0217, "padj": 0.4627, "size": 29}, {"pathway": "HP_HYPERTONIA", "NES": 1.5646, "pval": 0.022, "padj": 0.4627, "size": 24}, {"pathway": "GOBP_VASCULATURE_DEVELOPMENT", "NES": 1.5226, "pval": 0.0225, "padj": 0.4627, "size": 33}, {"pathway": "GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND", "NES": 1.4874, "pval": 0.0226, "padj": 0.4627, "size": 44}], "2": [{"pathway": "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "NES": 1.5773, "pval": 1e-05, "padj": 0.0096, "size": 140}, {"pathway": "GOBP_CELL_CELL_SIGNALING", "NES": 1.4626, "pval": 0, "padj": 0.0236, "size": 184}, {"pathway": "GOCC_SYNAPSE", "NES": 1.4137, "pval": 0, "padj": 0.0236, "size": 255}, {"pathway": "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY", "NES": 1.6287, "pval": 0.0001, "padj": 0.0236, "size": 67}, {"pathway": "GOCC_POSTSYNAPTIC_MEMBRANE", "NES": 1.66, "pval": 0.0001, "padj": 0.0279, "size": 55}, {"pathway": "GOBP_SYNAPTIC_SIGNALING", "NES": 1.476, "pval": 0.0003, "padj": 0.0639, "size": 134}, {"pathway": "GOCC_ION_CHANNEL_COMPLEX", "NES": 1.6545, "pval": 0.0003, "padj": 0.0639, "size": 51}, {"pathway": "GOMF_PASSIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY", "NES": 1.646, "pval": 0.0003, "padj": 0.065, "size": 50}, {"pathway": "GOMF_TRANSPORTER_ACTIVITY", "NES": 1.531, "pval": 0.0004, "padj": 0.0683, "size": 86}, {"pathway": "GOBP_ION_TRANSPORT", "NES": 1.4376, "pval": 0.0006, "padj": 0.0914, "size": 133}, {"pathway": "GOMF_GATED_CHANNEL_ACTIVITY", "NES": 1.6491, "pval": 0.0008, "padj": 0.1018, "size": 44}, {"pathway": "GOCC_TRANSPORTER_COMPLEX", "NES": 1.6015, "pval": 0.0008, "padj": 0.1018, "size": 56}, {"pathway": "GOCC_SYNAPTIC_MEMBRANE", "NES": 1.5312, "pval": 0.0008, "padj": 0.1018, "size": 76}, {"pathway": "GOMF_INORGANIC_MOLECULAR_ENTITY_TRANSMEMBRANE_TRANSPORTER_ACTIVITY", "NES": 1.5274, "pval": 0.0009, "padj": 0.1018, "size": 69}, {"pathway": "GOMF_CATION_CHANNEL_ACTIVITY", "NES": 1.6236, "pval": 0.001, "padj": 0.1087, "size": 45}, {"pathway": 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"GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION", "NES": 1.5724, "pval": 0.007, "padj": 0.3231, "size": 31}, {"pathway": "GOBP_REGULATION_OF_CELL_POPULATION_PROLIFERATION", "NES": 1.4392, "pval": 0.01, "padj": 0.3231, "size": 69}, {"pathway": "GOBP_LOCOMOTION", "NES": 1.4139, "pval": 0.0101, "padj": 0.3231, "size": 81}, {"pathway": "GOBP_BIOLOGICAL_ADHESION", "NES": 1.4014, "pval": 0.0109, "padj": 0.3231, "size": 90}, {"pathway": "GOBP_ORGANIC_ACID_METABOLIC_PROCESS", "NES": 1.5885, "pval": 0.011, "padj": 0.3231, "size": 22}, {"pathway": "GOMF_SULFUR_COMPOUND_BINDING", "NES": 1.5833, "pval": 0.0111, "padj": 0.3231, "size": 23}, {"pathway": "HP_ABNORMALITY_OF_TOE", "NES": 1.5743, "pval": 0.0113, "padj": 0.3231, "size": 24}, {"pathway": "GOBP_RESPONSE_TO_OXIDATIVE_STRESS", "NES": 1.6198, "pval": 0.0115, "padj": 0.3231, "size": 18}, {"pathway": "GOBP_EXTERNAL_ENCAPSULATING_STRUCTURE_ORGANIZATION", "NES": 1.4903, "pval": 0.0118, "padj": 0.3231, "size": 41}], "11": [{"pathway": "GOCC_INTRINSIC_COMPONENT_OF_PLASMA_MEMBRANE", "NES": 1.7461, "pval": 0, "padj": 1e-05, "size": 154}, {"pathway": "GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY", "NES": 1.8425, "pval": 0, "padj": 0.0039, "size": 53}, {"pathway": "GOMF_MOLECULAR_TRANSDUCER_ACTIVITY", "NES": 1.7428, "pval": 0, "padj": 0.0132, "size": 61}, {"pathway": "GOBP_BIOLOGICAL_ADHESION", "NES": 1.568, "pval": 0.0001, "padj": 0.0174, "size": 113}, {"pathway": "GOCC_POSTSYNAPTIC_MEMBRANE", "NES": 1.7123, "pval": 0.0001, "padj": 0.0174, "size": 55}, {"pathway": "GOBP_REGULATION_OF_ION_TRANSMEMBRANE_TRANSPORT", "NES": 1.6483, "pval": 0.0001, "padj": 0.0174, "size": 77}, {"pathway": "GOBP_TRANSMEMBRANE_TRANSPORT", "NES": 1.5203, "pval": 0.0001, "padj": 0.0174, "size": 145}, {"pathway": "GOBP_REGULATION_OF_SYSTEM_PROCESS", "NES": 1.6806, "pval": 0.0001, "padj": 0.0174, "size": 64}, {"pathway": "GOBP_REGULATION_OF_TRANSMEMBRANE_TRANSPORT", "NES": 1.6234, "pval": 0.0001, "padj": 0.0175, "size": 84}, {"pathway": "GOBP_CELL_CELL_ADHESION", "NES": 1.6195, "pval": 0.0002, "padj": 0.0351, "size": 72}, {"pathway": "GOBP_REGULATION_OF_CATION_TRANSMEMBRANE_TRANSPORT", "NES": 1.6697, "pval": 0.0002, "padj": 0.0351, "size": 56}, {"pathway": "GOBP_REGULATION_OF_TRANSPORTER_ACTIVITY", "NES": 1.7362, "pval": 0.0003, "padj": 0.0351, "size": 42}, {"pathway": "GOBP_CELL_CELL_SIGNALING", "NES": 1.422, "pval": 0.0004, "padj": 0.0467, "size": 183}, {"pathway": "GOBP_REGULATION_OF_SYNAPSE_ASSEMBLY", "NES": 1.897, "pval": 0.0005, "padj": 0.0551, "size": 17}, {"pathway": "GOBP_NERVOUS_SYSTEM_PROCESS", "NES": 1.5367, "pval": 0.0005, "padj": 0.0566, "size": 105}, {"pathway": "GOBP_ION_TRANSMEMBRANE_TRANSPORT", "NES": 1.4838, "pval": 0.0006, "padj": 0.0566, "size": 127}, {"pathway": "GOMF_G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY", "NES": 1.8806, "pval": 0.0006, "padj": 0.0595, "size": 18}, {"pathway": "GOBP_MUSCLE_SYSTEM_PROCESS", "NES": 1.6549, "pval": 0.0007, "padj": 0.0661, "size": 45}, {"pathway": "GOBP_ION_TRANSPORT", "NES": 1.4088, "pval": 0.0009, "padj": 0.071, "size": 161}, {"pathway": "GOBP_REGULATION_OF_CELL_JUNCTION_ASSEMBLY", "NES": 1.7872, "pval": 0.0009, "padj": 0.071, "size": 24}]};
\ No newline at end of file
diff --git a/src/static/raw_data_js/gsea_results.js b/src/static/raw_data_js/gsea_results.js
new file mode 100644
index 0000000..8d39801
--- /dev/null
+++ b/src/static/raw_data_js/gsea_results.js
@@ -0,0 +1 @@
+const gsea_results = [{"pathway": "GOBP_ACTIN_FILAMENT_BASED_PROCESS", "pval": 0.7699, "padj": 1, "log2err": 0.0079, "ES": 0.2394, "NES": 0.8323, "size": 46, "leadingEdge": ["Kank1", "Ctnna3", "Farp2", "Hmcn1", "Gab1", "Ppp1r9a", "Lpar1", "Shroom4", "Flnb", "Sorbs2", "Atp1a2", "Fat1", "Epb41l2", "Fam107a", "Sorbs1", "Antxr1", "Gas7", "Limch1", "Myo18a", "Sdc4"], "cluster": "0"}, {"pathway": "GOBP_ACTIN_FILAMENT_ORGANIZATION", "pval": 0.4656, "padj": 1, "log2err": 0.0155, "ES": 0.3153, "NES": 1.0225, "size": 26, "leadingEdge": ["Kank1", "Ctnna3", "Hmcn1", "Ppp1r9a", "Lpar1", "Shroom4", "Sorbs2", "Fat1", "Fam107a", "Sorbs1", "Gas7", "Limch1", "Sdc4", "Stmn1"], "cluster": "0"}, {"pathway": "GOBP_AGING", "pval": 0.3736, "padj": 1, "log2err": 0.0187, "ES": 0.3672, "NES": 1.0997, "size": 15, "leadingEdge": ["Vcam1", "Serpinf1", "Ednrb", "Gfra1", "Tbx3", "Bmpr1a", "Mif", "Bcl2", "Ctnna1", "Srebf1"], "cluster": "0"}, {"pathway": "GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION", "pval": 0.1511, "padj": 1, "log2err": 0.0342, "ES": 0.3751, "NES": 1.2578, "size": 34, "leadingEdge": ["Kank1", "Gpc3", "Tgfb2", "Serpinf1", "Ednrb", "Apoe", "Tgfb1", "Sema4b", "Sema3c", "Dock5", "Mef2c", "Mapre2", "Sox10", "Sash1", "Hand2", "Cdh2", "Dock1", "Acvr1", "Sdc4"], "cluster": "0"}, {"pathway": "GOBP_AMIDE_BIOSYNTHETIC_PROCESS", "pval": 0.9999, "padj": 1, "log2err": 0.0001, "ES": 0.0187, "NES": 0.0611, "size": 28, "leadingEdge": ["Acss1", "Vim", "Snca", "P2rx7", "Acacb", "Rrbp1", "Hspb1", "Itga2", "Dis3l2", "Dnajc1", "Cnot2", "Zfp36l1", "Rpl22", "Calr", "Foxo3", "Dmd", "Cnot6", "Mrps28", "Pan3", "Rplp1", "Rpl34", "Rps16", "Rpl23", "Rpl18a", "Rock2", "Rps14", "Rps4x", "Rpl13a"], "cluster": "0"}, {"pathway": "GOBP_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS", "pval": 0.3771, "padj": 1, "log2err": 0.0185, "ES": 0.3025, "NES": 1.0696, "size": 54, "leadingEdge": ["Hey2", "Col8a1", "Tgfb2", "Serpinf1", "Ptgfrn", "Col12a1", "Tgfb1", "Col11a1", "Sulf1", "Sdk2", "Gab1", "Sema3c", "Tanc1", "Ext1", "Ramp1", "Mef2c"], "cluster": "0"}, {"pathway": "GOBP_ANIMAL_ORGAN_MORPHOGENESIS", "pval": 0.1225, "padj": 1, "log2err": 0.0386, "ES": 0.3542, "NES": 1.2539, "size": 55, "leadingEdge": ["Otor", "Pdgfc", "Hey2", "Col8a1", "Gpc3", "Tgfb2", "Frzb", "Tgfb1", "Sox5", "Cpe", "Col11a1", "Sulf1", "Sdk2", "Zfpm2", "Sema3c", "Ext1"], "cluster": "0"}, {"pathway": "GOBP_APOPTOTIC_SIGNALING_PATHWAY", "pval": 0.8165, "padj": 1, "log2err": 0.0068, "ES": 0.2343, "NES": 0.7559, "size": 25, "leadingEdge": ["Tgfb2", "Tgfb1", "Tmbim1", "Timp3", "Hipk2", "P2rx7", "Wwox", "Acvr1", "Mif", "Bcl2", "Itm2c", "Ctnna1", "Tmbim6", "Hspb1", "Erbb3", "Itgav", "Bclaf1", "Stk3", "Ifi27"], "cluster": "0"}, {"pathway": "GOBP_AXON_DEVELOPMENT", "pval": 0.6296, "padj": 1, "log2err": 0.0111, "ES": 0.2807, "NES": 0.9148, "size": 27, "leadingEdge": ["Apoe", "Sema4b", "Ptprz1", "Sema3c", "Ext1", "Lrrc4c", "S100b", "Metrn", "Crtac1", "Cdh2", "Plxna4", "Stmn1", "Ptn", "Ddr1", "Bcl2"], "cluster": "0"}, {"pathway": "GOBP_BEHAVIOR", "pval": 0.2446, "padj": 1, "log2err": 0.0254, "ES": 0.3674, "NES": 1.1853, "size": 25, "leadingEdge": ["Serpinf1", "Apoe", "Slc18a2", "Plcb1", "Ptprz1", "Tanc1", "Ext1", "S100b", "Mef2c", "Atp1a2", "Snca", "Hipk2", "Hand2", "Grik2", "Chd7", "Ptn", "Bcl2"], "cluster": "0"}, {"pathway": "GOBP_BIOLOGICAL_ADHESION", "pval": 0.7459, "padj": 1, "log2err": 0.0084, "ES": 0.2368, "NES": 0.8776, "size": 97, "leadingEdge": ["Kank1", "Col8a1", "Islr", "Vcam1", "Ctnna3", "Tgfb2", "Farp2", "Col12a1", "Ctnnal1", "Fbln2", "Hmcn1", "Tgfb1", "Igsf11", "Sdk2", "Fbln5", "Peli1", "Nid1", "Ext1", "Lrrc4c", "Dock5", "Serpine2", "St3gal4", "Ttyh1", "Fat1", "Megf10", "Spon1", "Fam107a", "St6gal1", "Sorbs1", "Antxr1", "Cdh2", "Il1rapl1", "Limch1", "Pdzd2", "Axl", "Ptprj", "Dock1", "Zdhhc2", "Pbxip1", "Acvr1", "Sdc4", "Plxna4"], "cluster": "0"}, {"pathway": "GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_INTERSPECIES_INTERACTION_BETWEEN_ORGANISMS", "pval": 0.5916, "padj": 1, "log2err": 0.012, "ES": 0.2733, "NES": 0.9502, "size": 46, "leadingEdge": ["Vcam1", "Gpc3", "Ednrb", "Apoe", "Hmcn1", "Tgfb1", "Peli1", "Eps15", "Vim", "Ext1", "Flnb", "Mef2c", "Loxl1"], "cluster": "0"}, {"pathway": "GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_SYMBIOTIC_INTERACTION", "pval": 0.9529, "padj": 1, "log2err": 0.0032, "ES": 0.1588, "NES": 0.4754, "size": 15, "leadingEdge": ["Apoe", "Eps15", "Axl", "Itga2", "Itgav", "Cd81", "Ifi27", "Gsn", "Ctsb", "Lamp1", "Ctsl", "Ppib", "Bsg"], "cluster": "0"}, {"pathway": "GOBP_BLOOD_VESSEL_MORPHOGENESIS", "pval": 0.3306, "padj": 1, "log2err": 0.0205, "ES": 0.3291, "NES": 1.1073, "size": 35, "leadingEdge": ["Hey2", "Col8a1", "Tgfb2", "Serpinf1", "Apoe", "Tgfb1", "Sulf1", "Zfpm2", "Gab1", "Ramp1", "Bmpr1a", "Hipk2", "Sash1", "Hand2", "Cdh2", "Adipor2", "Acvr1", "Chd7", "Reck", "Ramp2"], "cluster": "0"}, {"pathway": "GOBP_CALCIUM_ION_TRANSPORT", "pval": 0.6668, "padj": 1, "log2err": 0.0102, "ES": 0.2903, "NES": 0.8693, "size": 15, "leadingEdge": ["Ednrb", "Cachd1", "Ramp1", "Atp1a2", "Snca", "P2rx7", "Chd7", "Ramp2", "Bcl2", "Tmbim6", "Itgav"], "cluster": "0"}, {"pathway": "GOBP_CANONICAL_WNT_SIGNALING_PATHWAY", "pval": 0.0338, "padj": 0.945, "log2err": 0.0772, "ES": 0.4831, "NES": 1.5198, "size": 21, "leadingEdge": ["Kank1", "Gpc3", "Frzb", "Ednrb", "Apoe", "Igfbp4", "Tgfb1"], "cluster": "0"}, {"pathway": "GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS", "pval": 0.1891, "padj": 1, "log2err": 0.0299, "ES": 0.4086, "NES": 1.2603, "size": 18, "leadingEdge": ["Galnt16", "Plcb1", "Tgfb1", "Mgat3", "Acss1", "Ext1", "Ramp1", "St3gal4", "St6gal1", "Snca"], "cluster": "0"}, {"pathway": "GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS", "pval": 0.1017, "padj": 1, "log2err": 0.0429, "ES": 0.405, "NES": 1.3325, "size": 29, "leadingEdge": ["Ednrb", "Galnt16", "Plcb1", "Tgfb1", "Col11a1", "Sulf1", "Mgat3", "Cst3", "Pde7b", "Acss1", "Ext1", "Ramp1", "St3gal4", "St6gal1", "Snca"], "cluster": "0"}, {"pathway": "GOBP_CARBOHYDRATE_METABOLIC_PROCESS", "pval": 0.1514, "padj": 1, "log2err": 0.0342, "ES": 0.4348, "NES": 1.3165, "size": 16, "leadingEdge": ["Igfbp4", "Tgfb1", "Ext1", "Foxo1", "St3gal4", "Pygb", "Sorbs1", "Snca", "Ldhb", "P2rx7", "Acacb"], "cluster": "0"}, {"pathway": "GOBP_CARDIAC_MUSCLE_TISSUE_DEVELOPMENT", "pval": 0.1056, "padj": 1, "log2err": 0.042, "ES": 0.4659, "NES": 1.3952, "size": 15, "leadingEdge": ["Hey2", "Tgfb2", "Tgfb1", "Col11a1", "Zfpm2", "Sorbs2", "Mef2c", "Tbx3"], "cluster": "0"}, {"pathway": "GOBP_CARTILAGE_DEVELOPMENT", "pval": 0.0311, "padj": 0.945, "log2err": 0.0806, "ES": 0.486, "NES": 1.5288, "size": 21, "leadingEdge": ["Otor", "Chadl", "Frzb", "Tgfb1", "Sox5", "Col11a1", "Sulf1"], "cluster": "0"}, {"pathway": "GOBP_CATION_TRANSMEMBRANE_TRANSPORT", "pval": 0.8118, "padj": 1, "log2err": 0.0069, "ES": 0.2391, "NES": 0.7423, "size": 19, "leadingEdge": ["Ednrb", "Cachd1", "Mef2c", "Atp1a2", "Ttyh1", "Slc43a2", "Snca", "P2rx7", "Chd7", "Fxyd1", "Cd63", "Itgav", "Atp8a1", "Kcna6", "Kcnq5", "Dmd", "Camk2d"], "cluster": "0"}, {"pathway": "GOBP_CATION_TRANSPORT", "pval": 0.7872, "padj": 1, "log2err": 0.0075, "ES": 0.2399, "NES": 0.7959, "size": 31, "leadingEdge": ["Ednrb", "Slc18a2", "Cachd1", "Nkain4", "Ramp1", "Mef2c", "Atp1a2", "Serpine2", "Ttyh1", "Slc43a2", "Snca", "P2rx7", "Chd7", "Ramp2", "Bcl2", "Fxyd1", "Tmbim6", "Cd63", "Itgav", "Slc44a1", "Slc22a17", "Atp8a1"], "cluster": "0"}, {"pathway": "GOBP_CELLULAR_AMIDE_METABOLIC_PROCESS", "pval": 0.9886, "padj": 1, "log2err": 0.0015, "ES": 0.1365, "NES": 0.4682, "size": 41, "leadingEdge": ["Apoe", "Cpe", "Mgat3", "Acss1", "Vim", "Gsap", "Ifngr1", "Spon1", "St6gal1", "Snca", "Sorl1", "P2rx7"], "cluster": "0"}, {"pathway": "GOBP_CELLULAR_COMPONENT_DISASSEMBLY", "pval": 0.9657, "padj": 1, "log2err": 0.0027, "ES": 0.153, "NES": 0.475, "size": 19, "leadingEdge": ["Tgfb1", "Cst3", "Sh3pxd2b", "Mapre2", "Pbxip1", "Stmn1", "Ddr1", "Srebf1", "Nckap5", "Lamp2"], "cluster": "0"}, {"pathway": "GOBP_CELLULAR_COMPONENT_MORPHOGENESIS", "pval": 0.6649, "padj": 1, 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