diff --git a/.github/workflows/covr.yml b/.github/workflows/covr.yml index 7c4be1c3b..6377cac54 100644 --- a/.github/workflows/covr.yml +++ b/.github/workflows/covr.yml @@ -30,14 +30,6 @@ jobs: with: use-public-rspm: true - - name: Set up dependencies (GiottoData) - run: | - suppressWarnings({ - install.packages("remotes") - remotes::install_github('drieslab/GiottoData', build = FALSE) - }) - shell: Rscript {0} - - name: Set up dependencies (general) uses: r-lib/actions/setup-r-dependencies@v2 env: @@ -45,14 +37,16 @@ jobs: _R_CHECK_RD_XREFS: false with: dependencies: '"hard"' # do not use suggested dependencies + install-pandoc: false extra-packages: | any::rcmdcheck any::testthat any::rlang any::R.utils any::covr + any::remotes any::hdf5r - GiottoData=?ignore + github::drieslab/GiottoData needs: coverage - name: Generate coverage report diff --git a/.github/workflows/main_check.yaml b/.github/workflows/main_check.yaml index 86ff8f93f..d63290cc9 100644 --- a/.github/workflows/main_check.yaml +++ b/.github/workflows/main_check.yaml @@ -51,14 +51,6 @@ jobs: http-user-agent: ${{ matrix.config.http-user-agent }} use-public-rspm: true - - name: Set up dependencies (GiottoData) - run: | - suppressWarnings({ - install.packages("remotes") - remotes::install_github("drieslab/GiottoData", build = FALSE) - }) - shell: Rscript {0} - - name: Set up dependencies (general) uses: r-lib/actions/setup-r-dependencies@v2 env: @@ -66,6 +58,7 @@ jobs: _R_CHECK_RD_XREFS: false with: dependencies: '"hard"' # do not use suggested dependencies + install-pandoc: false extra-packages: | any::rcmdcheck any::testthat @@ -73,10 +66,9 @@ jobs: any::rlang any::R.utils any::remotes - any::covr any::spdep any::future.apply - GiottoData=?ignore + github::drieslab/GiottoData - name: Test python env install run: |