DESCRIPTION

Package: Giotto
Title: Spatial Single-Cell Transcriptomics Toolbox
Version: 1.1.2
Authors@R: c(
	person("Ruben", "Dries", email = "rubendries@gmail.com",
		 role = c("aut", "cre")),
	person("Qian", "Zhu", email = "zqian@jimmy.harvard.edu",
		 role = c("aut")),
	person("Huipeng", "Li", email = "Huipeng_Li@DFCI.HARVARD.EDU",
		role = c("aut")),
	person("Rui", "Dong", email = "rdong@jimmy.harvard.edu",
		 role = c("aut")),
	person("Guo-Cheng", "Yuan", email = "gcyuan@ds.dfci.harvard.edu",
		 role = c("aut"))
	)
Maintainer: Ruben Dries <rubendries@gmail.com>
Description: Toolbox to process, analyze and visualize spatial single-cell expression data.
License: MIT | file LICENSE
Encoding: UTF-8
LazyData: true
URL: https://rubd.github.io/Giotto/, https://github.com/RubD/Giotto
BugReports: https://github.com/RubD/Giotto/issues
RoxygenNote: 7.2.1
Depends:
    base (>= 3.5.0),
    utils (>= 3.5.0),
    R (>= 3.5.0)
Imports:
    ClusterR,
    ComplexHeatmap (>= 1.20.0),
    cowplot (>= 0.9.4),
    data.table (>= 1.12.2),
    dbscan (>= 1.1-3),
    deldir,
    farver (>= 2.0.3),
    fitdistrplus,
    ggplot2 (>= 3.1.1),
    ggdendro,
    ggraph,
    ggrepel,
    grDevices,
    graphics,
    igraph (>= 1.2.4.1),
    irlba,
    lfa (>= 1.12.0),
    limma,
    Matrix,
    magick,
    magrittr,
    matrixStats (>= 0.55.0),
    methods,
    plotly,
    parallel,
    qvalue (>= 2.14.1),
    RColorBrewer (>= 1.1-2),
    Rcpp,
    reshape2,
    reticulate (>= 1.14),
    Rfast,
    Rtsne (>= 0.15),
    rlang (>= 0.4.3),
    R.utils,
    scales (>= 1.0.0),
    uwot (>= 0.0.0.9010)
Suggests:
    Biobase,
    biomaRt,
    circlize,
    dendextend (>= 1.13.0),
    FactoMineR,
    factoextra,
    geometry,
    ggalluvial (>= 0.9.1),
    ggforce,
    hdf5r,
    htmlwidgets,
    jackstraw,
    knitr,
    MAST,
    multinet (>= 3.0.2),
    png,
    quadprog,
    rmarkdown,
    RTriangle (>= 1.6-0.10),
    scran (>= 1.10.1),
    SingleCellExperiment,
    smfishHmrf,
    SPARK,
    tiff,
    trendsceek
biocViews:
VignetteBuilder: knitr